View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13180_high_18 (Length: 240)
Name: NF13180_high_18
Description: NF13180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13180_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 32095755 - 32095978
Alignment:
| Q |
1 |
ttaaccatttcatttcagtaaacaaaaattcaaatccatgagatggggcacatggtgatccaacaccgtaattctataaatatattagctctttaactaa |
100 |
Q |
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| T |
32095755 |
ttaaccatttcatttcagtaaacaaaaattcaaatccatgagatggggcacatggtgatccaacaccgtaattctataaatatattagctctttaactaa |
32095854 |
T |
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| Q |
101 |
tacaggcttgatacaatggccaagatacgaccgactaccaccaaatagtgccaataataaatcaaaattggagtaactaattatacagtaatcttaacca |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32095855 |
tacaggcttgatacaatgaccaagatacgaccgactaccaccaaatagtgccaataataaatcaaaattggagtaactaattatacagtaatcttaacca |
32095954 |
T |
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| Q |
201 |
agaccaagcattggatataaaatg |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
32095955 |
agaccaagcattggatataaaatg |
32095978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 72 - 224
Target Start/End: Original strand, 32091741 - 32091893
Alignment:
| Q |
72 |
ttctataaatatattagctctttaactaatacaggcttgatacaatggccaagatacgaccgactaccaccaaatagtgccaataataaatcaaaattgg |
171 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
32091741 |
ttctataattatattagctctttaacaaatacaggcttgatacattgaccaagatacgaccgactaccaccaaatagttgcaataataaatcaacattgg |
32091840 |
T |
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| Q |
172 |
agtaactaattatacagtaatcttaaccaagaccaagcattggatataaaatg |
224 |
Q |
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| T |
32091841 |
agtaactaattatgcagtaatcttaaccaagaccaagcattggttataaaatg |
32091893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 32091629 - 32091717
Alignment:
| Q |
1 |
ttaaccatttcatttcagtaaacaaaaattcaaatccatgagatgggg-------cacatggtgatccaacaccgtaattctataaata |
82 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
32091629 |
ttaaccatttcatttcagtaaacaaaaattcaaatccatgagatagggcacatgccacatggtgatccaacaccgtaattctataaata |
32091717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 88
Target Start/End: Original strand, 29427872 - 29427907
Alignment:
| Q |
53 |
tggtgatccaacaccgtaattctataaatatattag |
88 |
Q |
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| T |
29427872 |
tggtgatccaacaccgtaattctattaatatattag |
29427907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 136 - 211
Target Start/End: Complemental strand, 41746642 - 41746567
Alignment:
| Q |
136 |
taccaccaaatagtgccaataataaatcaaaattggagtaactaattatacagtaatcttaaccaagaccaagcat |
211 |
Q |
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| T |
41746642 |
taccaccaagtagttgcagtaataaatcaacattggagtaactaattatacaataatcttaacctaaaccaagcat |
41746567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 41746795 - 41746719
Alignment:
| Q |
1 |
ttaaccatttcatttcagtaaacaaaaattcaaatccatgagatggggcacatggtgatccaacaccgtaattctat |
77 |
Q |
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|||| ||||||||||||||| |||||| ||||||| | ||| |||| |||||||||||||| |||| |||||||||| |
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| T |
41746795 |
ttaaacatttcatttcagtatacaaaagttcaaatacgtgaaatggagcacatggtgatccgacactgtaattctat |
41746719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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