View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13180_high_2 (Length: 531)
Name: NF13180_high_2
Description: NF13180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13180_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 420; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 16 - 517
Target Start/End: Complemental strand, 11683391 - 11682888
Alignment:
| Q |
16 |
atcataagtataactgaaaatttaataaaattggtaaaggttatcagtttttacatacaaaaacatgattaatttcagggtcaaaatcataagtaacaac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11683391 |
atcataagtataactgaaaatttaataaaattggtaaaggttatcagtttttacatacaaaaacatgattaatttcagggtcaaaatcataagtaacaac |
11683292 |
T |
|
| Q |
116 |
aacaacaa---gaataataataataaattaggttaacagattcaattcagaattaccgtgaggnnnnnnnnnnnnnnnnnnnacattgtcatcatggaaa |
212 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
11683291 |
aacaacaacaagaataataataataaattaggttaacagattcaattcagaattaccgtgaggagaagaagaagaagac---acattgtcatcatggaaa |
11683195 |
T |
|
| Q |
213 |
tcggttaaaagcttagaaattgag--gagctgatcaaagacatggtcagagatagggttgagaatcaagtcaatgtgcttcctcttattccacggatatt |
310 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11683194 |
tcggttaaaagcttagaaattgagaggagctgatcaaagacatggtcagagatagggttgagaatcaagtcaatgtgcttcctcttattccacggatatt |
11683095 |
T |
|
| Q |
311 |
tagaaccggtctcgtttttgagaatttcaacgattatataggcgacaaacccgagggtagagagtggctgaccggcaagtggctggcggatgaggttaag |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11683094 |
tagaaccggtctcgtttttgagaatttcaacgattatataggcgacaaacccgagggtagagagtggctgaccggcaagtggctggcggatgaggttaag |
11682995 |
T |
|
| Q |
411 |
aaattcgtcataggcagcacgggtttcgtcagtcttaggctggtagaagacttcttcatagttaccgagatactcctcctgcttcgggcgttgacacaca |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11682994 |
aaattcgtcataggcagcacgggtttcgtcagtcttaggctggtagaagacttcttcatagttaccgagatactcctcctgcttcgggcgttgacacaca |
11682895 |
T |
|
| Q |
511 |
tgatttg |
517 |
Q |
| |
|
||||||| |
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|
| T |
11682894 |
tgatttg |
11682888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 16 - 517
Target Start/End: Original strand, 11717767 - 11718270
Alignment:
| Q |
16 |
atcataagtataactgaaaatttaataaaattggtaaaggttatcagtttttacatacaaaaacatgattaatttcagggtcaaaatcataagtaacaac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11717767 |
atcataagtataactgaaaatttaataaaattggtaaaggttatcagtttttacatacaaaaacatgattaatttcagggtcaaaatcataagtaacaac |
11717866 |
T |
|
| Q |
116 |
aacaacaa---gaataataataataaattaggttaacagattcaattcagaattaccgtgaggnnnnnnnnnnnnnnnnnnnacattgtcatcatggaaa |
212 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
11717867 |
aacaacaacaagaataataataataaattaggttaacagattcaattcagaattaccgtgaggagaagaagaagaagac---acattgtcatcatggaaa |
11717963 |
T |
|
| Q |
213 |
tcggttaaaagcttagaaattgag--gagctgatcaaagacatggtcagagatagggttgagaatcaagtcaatgtgcttcctcttattccacggatatt |
310 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11717964 |
tcggttaaaagcttagaaattgagaggagctgatcaaagacatggtcagagatagggttgagaatcaagtcaatgtgcttcctcttattccacggatatt |
11718063 |
T |
|
| Q |
311 |
tagaaccggtctcgtttttgagaatttcaacgattatataggcgacaaacccgagggtagagagtggctgaccggcaagtggctggcggatgaggttaag |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11718064 |
tagaaccggtctcgtttttgagaatttcaacgattatataggcgacaaacccgagggtagagagtggctgaccggcaagtggctggcggatgaggttaag |
11718163 |
T |
|
| Q |
411 |
aaattcgtcataggcagcacgggtttcgtcagtcttaggctggtagaagacttcttcatagttaccgagatactcctcctgcttcgggcgttgacacaca |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11718164 |
aaattcgtcataggcagcacgggtttcgtcagtcttaggctggtagaagacttcttcatagttaccgagatactcctcctgcttcgggcgttgacacaca |
11718263 |
T |
|
| Q |
511 |
tgatttg |
517 |
Q |
| |
|
||||||| |
|
|
| T |
11718264 |
tgatttg |
11718270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 388 - 474
Target Start/End: Complemental strand, 27651970 - 27651883
Alignment:
| Q |
388 |
agtggctggcggatgaggttaagaaattcgtcataggcag-cacgggtttcgtcagtcttaggctggtagaagacttcttcatagtta |
474 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||| | ||||||||| |||| |
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|
| T |
27651970 |
agtggctgccggatgaggttaagaaattcatcataggcagccacgagtttcgtcagtcttaggctggtagatgccttcttcatcgtta |
27651883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 195 - 318
Target Start/End: Complemental strand, 27652133 - 27652001
Alignment:
| Q |
195 |
acattgtcatcatggaaatcggttaaaagcttagaaattgag--gagctgatcaaaga------ca-tggtcagagatagggttgagaatcaagtcaatg |
285 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||| ||| |||||||||||||| || |||||||||||||||||||||| |||||||||| |
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|
| T |
27652133 |
acattggcatcatggaaatcagttaaaagcttagaaatcgagaggagctgatcaaagaagtggtcactggtcagagatagggttgagaagcaagtcaatg |
27652034 |
T |
|
| Q |
286 |
tgcttcctcttattccacggatatttagaaccg |
318 |
Q |
| |
|
|||||| |||||||| || ||| |||| ||||| |
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|
| T |
27652033 |
tgcttcttcttattctactgatgtttataaccg |
27652001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 11684154 - 11684118
Alignment:
| Q |
128 |
aataataataaattaggttaacagattcaattcagaa |
164 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |
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|
| T |
11684154 |
aataataataaattaggttagcagattcaattcagaa |
11684118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 11717004 - 11717040
Alignment:
| Q |
128 |
aataataataaattaggttaacagattcaattcagaa |
164 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |
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|
| T |
11717004 |
aataataataaattaggttagcagattcaattcagaa |
11717040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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