View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13180_high_5 (Length: 374)

Name: NF13180_high_5
Description: NF13180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13180_high_5
NF13180_high_5
[»] chr1 (32 HSPs)
chr1 (12-357)||(5423553-5423904)
chr1 (173-294)||(26857165-26857286)
chr1 (197-307)||(44442248-44442358)
chr1 (214-294)||(5250916-5250996)
chr1 (214-303)||(1600951-1601039)
chr1 (216-311)||(45359264-45359359)
chr1 (206-286)||(50974581-50974661)
chr1 (218-293)||(1048689-1048763)
chr1 (206-274)||(5115613-5115681)
chr1 (213-305)||(46592483-46592575)
chr1 (226-305)||(10370411-10370490)
chr1 (174-232)||(43561928-43561986)
chr1 (213-305)||(39912221-39912316)
chr1 (205-334)||(40053264-40053393)
chr1 (204-310)||(41019495-41019601)
chr1 (189-258)||(44584040-44584109)
chr1 (226-286)||(28171509-28171569)
chr1 (247-307)||(42787760-42787820)
chr1 (222-285)||(6983013-6983076)
chr1 (218-273)||(51237604-51237659)
chr1 (206-264)||(2120487-2120545)
chr1 (189-274)||(5229026-5229109)
chr1 (218-264)||(18945145-18945191)
chr1 (192-305)||(4220622-4220735)
chr1 (187-316)||(10110233-10110361)
chr1 (227-272)||(39420814-39420859)
chr1 (206-254)||(8454324-8454372)
chr1 (206-258)||(9931822-9931874)
chr1 (189-285)||(14758579-14758675)
chr1 (191-255)||(26928253-26928317)
chr1 (224-272)||(38570379-38570427)
chr1 (206-270)||(38643854-38643918)
[»] chr2 (28 HSPs)
chr2 (189-305)||(13538396-13538512)
chr2 (191-311)||(41543971-41544092)
chr2 (187-305)||(38292368-38292487)
chr2 (186-307)||(14663166-14663288)
chr2 (208-282)||(40347956-40348030)
chr2 (217-294)||(32859796-32859873)
chr2 (213-305)||(44195507-44195599)
chr2 (218-307)||(18684360-18684449)
chr2 (206-272)||(13197283-13197349)
chr2 (220-305)||(8964392-8964477)
chr2 (189-258)||(16944812-16944881)
chr2 (189-258)||(17015477-17015546)
chr2 (208-285)||(37082210-37082286)
chr2 (205-305)||(9049156-9049256)
chr2 (217-311)||(45372734-45372829)
chr2 (217-307)||(35317819-35317908)
chr2 (206-255)||(1679931-1679980)
chr2 (219-284)||(20064932-20064997)
chr2 (218-285)||(6761745-6761812)
chr2 (217-284)||(31017326-31017393)
chr2 (218-285)||(33962962-33963029)
chr2 (251-305)||(7270298-7270351)
chr2 (208-274)||(11278764-11278830)
chr2 (207-309)||(35312099-35312201)
chr2 (204-258)||(43678556-43678610)
chr2 (187-264)||(6220832-6220909)
chr2 (257-305)||(10348950-10348998)
chr2 (213-285)||(33275908-33275979)
[»] chr8 (28 HSPs)
chr8 (194-305)||(39691109-39691220)
chr8 (189-305)||(1502660-1502777)
chr8 (219-294)||(37564352-37564427)
chr8 (191-305)||(25279929-25280042)
chr8 (191-305)||(31264997-31265111)
chr8 (246-305)||(42022640-42022699)
chr8 (204-310)||(9604207-9604313)
chr8 (213-294)||(29487073-29487155)
chr8 (217-310)||(34477807-34477901)
chr8 (192-274)||(41105991-41106073)
chr8 (246-333)||(11041039-11041126)
chr8 (246-305)||(15352117-15352176)
chr8 (234-312)||(25382615-25382694)
chr8 (206-264)||(6270359-6270417)
chr8 (176-254)||(41422249-41422327)
chr8 (205-305)||(2376734-2376834)
chr8 (206-258)||(33285932-33285984)
chr8 (196-251)||(26745159-26745214)
chr8 (192-258)||(4217473-4217539)
chr8 (213-263)||(40914585-40914635)
chr8 (204-285)||(11727905-11727985)
chr8 (218-307)||(12639928-12640017)
chr8 (208-293)||(25163031-25163116)
chr8 (191-272)||(44411075-44411156)
chr8 (205-305)||(6073230-6073330)
chr8 (206-285)||(10335029-10335109)
chr8 (205-305)||(11533232-11533332)
chr8 (210-258)||(18181237-18181285)
[»] chr3 (30 HSPs)
chr3 (204-298)||(51039762-51039856)
chr3 (217-305)||(11692733-11692821)
chr3 (173-274)||(46547754-46547855)
chr3 (218-305)||(54290796-54290883)
chr3 (191-285)||(30299300-30299394)
chr3 (213-305)||(43803969-43804061)
chr3 (189-305)||(49197030-49197146)
chr3 (217-307)||(45566100-45566189)
chr3 (175-272)||(47930114-47930212)
chr3 (218-305)||(53040469-53040556)
chr3 (189-274)||(21490591-21490677)
chr3 (192-261)||(40690232-40690302)
chr3 (206-286)||(1557742-1557822)
chr3 (217-285)||(11404726-11404794)
chr3 (218-305)||(31419209-31419294)
chr3 (208-307)||(1829254-1829353)
chr3 (219-334)||(25299057-25299172)
chr3 (209-292)||(31625350-31625433)
chr3 (189-239)||(1600543-1600593)
chr3 (208-258)||(33072120-33072170)
chr3 (174-305)||(53364534-53364667)
chr3 (224-310)||(53433211-53433297)
chr3 (208-258)||(53766702-53766752)
chr3 (218-271)||(37822608-37822661)
chr3 (189-270)||(47507121-47507202)
chr3 (217-286)||(55110046-55110115)
chr3 (245-305)||(4824659-4824719)
chr3 (214-274)||(24238272-24238332)
chr3 (206-305)||(24313551-24313651)
chr3 (234-305)||(49003102-49003171)
[»] scaffold0011 (1 HSPs)
scaffold0011 (173-310)||(219185-219326)
[»] chr7 (25 HSPs)
chr7 (191-305)||(18926327-18926441)
chr7 (217-307)||(33922759-33922848)
chr7 (205-305)||(43996353-43996454)
chr7 (213-332)||(35875059-35875177)
chr7 (202-305)||(34681692-34681795)
chr7 (226-334)||(27338233-27338341)
chr7 (218-294)||(35599821-35599897)
chr7 (190-301)||(35567118-35567231)
chr7 (189-305)||(36973336-36973454)
chr7 (208-288)||(37797953-37798033)
chr7 (232-294)||(9031707-9031769)
chr7 (208-306)||(22688960-22689058)
chr7 (241-307)||(38362253-38362319)
chr7 (208-305)||(41431099-41431197)
chr7 (200-305)||(3683424-3683527)
chr7 (188-305)||(33887842-33887958)
chr7 (191-260)||(40998374-40998443)
chr7 (221-285)||(37129834-37129898)
chr7 (206-282)||(40722382-40722458)
chr7 (189-272)||(20397459-20397542)
chr7 (219-305)||(36778703-36778789)
chr7 (211-285)||(41939493-41939567)
chr7 (234-336)||(44592835-44592937)
chr7 (189-305)||(25886170-25886287)
chr7 (173-256)||(9718967-9719051)
[»] chr4 (33 HSPs)
chr4 (204-337)||(48097920-48098053)
chr4 (213-305)||(24546722-24546814)
chr4 (190-307)||(19597141-19597258)
chr4 (213-305)||(2063475-2063567)
chr4 (218-309)||(12912863-12912954)
chr4 (213-334)||(41370182-41370303)
chr4 (173-303)||(49532225-49532354)
chr4 (214-292)||(52014584-52014662)
chr4 (206-290)||(3482658-3482742)
chr4 (210-303)||(20262104-20262198)
chr4 (220-274)||(44690284-44690338)
chr4 (186-274)||(3341557-3341646)
chr4 (173-310)||(4394903-4395040)
chr4 (220-305)||(50343857-50343942)
chr4 (234-310)||(9044229-9044305)
chr4 (217-293)||(21074478-21074554)
chr4 (174-309)||(40444402-40444537)
chr4 (197-312)||(45743308-45743423)
chr4 (205-272)||(50247950-50248017)
chr4 (219-305)||(32284882-32284968)
chr4 (246-312)||(53392438-53392504)
chr4 (240-305)||(2818359-2818424)
chr4 (208-285)||(20580083-20580160)
chr4 (213-338)||(47461056-47461181)
chr4 (230-311)||(48818608-48818688)
chr4 (218-274)||(5839558-5839614)
chr4 (173-256)||(13585234-13585318)
chr4 (236-268)||(14794177-14794209)
chr4 (173-229)||(23367664-23367720)
chr4 (267-307)||(24396191-24396231)
chr4 (206-310)||(25751708-25751812)
chr4 (217-337)||(41462017-41462137)
chr4 (217-305)||(47995755-47995843)
[»] chr6 (15 HSPs)
chr6 (173-285)||(34597211-34597322)
chr6 (191-293)||(25028690-25028792)
chr6 (192-305)||(6586410-6586523)
chr6 (196-272)||(2157189-2157265)
chr6 (191-302)||(12132530-12132641)
chr6 (218-286)||(12735500-12735568)
chr6 (237-273)||(31759826-31759862)
chr6 (220-310)||(10544618-10544705)
chr6 (228-286)||(10346023-10346081)
chr6 (204-294)||(32914973-32915063)
chr6 (186-256)||(2864925-2864997)
chr6 (217-258)||(5704577-5704618)
chr6 (213-285)||(5678485-5678557)
chr6 (191-298)||(12226646-12226754)
chr6 (220-284)||(34921588-34921652)
[»] chr5 (21 HSPs)
chr5 (173-305)||(24040997-24041129)
chr5 (217-330)||(16161394-16161507)
chr5 (224-285)||(8761947-8762008)
chr5 (219-286)||(26407532-26407599)
chr5 (217-334)||(8208150-8208267)
chr5 (236-305)||(10359090-10359159)
chr5 (213-305)||(25437888-25437981)
chr5 (213-274)||(31759010-31759071)
chr5 (213-293)||(967114-967194)
chr5 (186-304)||(12448672-12448791)
chr5 (191-273)||(42877276-42877358)
chr5 (234-306)||(22873470-22873542)
chr5 (196-307)||(14157725-14157836)
chr5 (206-284)||(20125661-20125739)
chr5 (218-308)||(33639759-33639849)
chr5 (237-334)||(4878586-4878683)
chr5 (220-272)||(4434654-4434706)
chr5 (208-272)||(20721264-20721328)
chr5 (234-294)||(33590065-33590125)
chr5 (245-305)||(36486911-36486971)
chr5 (206-258)||(38594938-38594990)
[»] scaffold0121 (1 HSPs)
scaffold0121 (224-334)||(28800-28910)
[»] scaffold0009 (1 HSPs)
scaffold0009 (220-305)||(189069-189154)
[»] scaffold0005 (1 HSPs)
scaffold0005 (236-268)||(45522-45554)


Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 12 - 357
Target Start/End: Original strand, 5423553 - 5423904
Alignment:
Q  12 atgaaacccacgcaaagaactacgagatgttagatttaaactcgataaaaatatccgatctaacaatacaagtatagtcaattgaataagatcttatgaa 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||| |||    
T  5423553 atgaaacccacgcaaagaactacgagatgttagatttaaactcgatgaaaatatccgatctaacaatacaagtatagtcaatcgaacaagatcttaggaa 5423652  T
Q  112 tcataaaaatagtaatttaacctactttagatggataaattcacatttcttatnnnnnnnn------ttaacgagtgtctcgagacactctttaaaggtc 205  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||              |||||||||| ||||||||||||||||||||||    
T  5423653 tcataaaaatactaatttaacctactttagatggataaattcacatttcttataacaaaaaaaaaagttaacgagtgcctcgagacactctttaaaggtc 5423752  T
Q  206 ttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaa 305  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5423753 ttaaatggtaattttttatgaaaacttatgtatttaatgcattgaaaattgaactatttaacttttttaaagaataattttctaatttaaaatgcttaaa 5423852  T
Q  306 aaatgctccagtaacattcgttaacaagatccgtaagaaaatgcgtcttttt 357  Q
     ||||||| |||||||||||||||||||| |||||||||||||| |||||||    
T  5423853 gaatgctctagtaacattcgttaacaagacccgtaagaaaatgcatcttttt 5423904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 173 - 294
Target Start/End: Original strand, 26857165 - 26857286
Alignment:
Q  173 ttaacgagtgtctcgagacactctttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttt 272  Q
    |||||||||||| |  |||||| ||||| |||||||||| |||||||||||||| | ||| | |||| ||| ||||||||||| ||||||||||||||||    
T  26857165 ttaacgagtgtcacttgacactttttaagggtcttaaatagtaattttttatgagattttgtatattcaatgcattgaaaattaaactatttaacttttt 26857264  T
Q  273 tagagaataattttctaattta 294  Q
    || |||||||||||||||||||    
T  26857265 taaagaataattttctaattta 26857286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 197 - 307
Target Start/End: Complemental strand, 44442358 - 44442248
Alignment:
Q  197 ttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaa 296  Q
    |||| |||||||||| |||| ||||||| ||||| | ||||||||||  ||||||||||||| ||||| ||||||||| |||||||||| ||||||||||    
T  44442358 ttaatggtcttaaatagtaactttttataaaaatatgtgtatttaatgtattgaaaattgaaatatttgacttttttaaagaataatttcctaatttaaa 44442259  T
Q  297 atgcttaaaaa 307  Q
    || ||||||||    
T  44442258 atacttaaaaa 44442248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 214 - 294
Target Start/End: Original strand, 5250916 - 5250996
Alignment:
Q  214 taattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaattta 294  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||| ||| ||||||||| ||||||| || ||||||||    
T  5250916 taattttttatgaaaatttgtgtatttaatacattgaaaattaaactgtttgacttttttaaagaataacttcctaattta 5250996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 214 - 303
Target Start/End: Complemental strand, 1601039 - 1600951
Alignment:
Q  214 taattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgctta 303  Q
    ||||||||||| ||| |||||||||||||| ||||  ||||||||||||||||| |||||| ||||||||||| ||||||| ||||||||    
T  1601039 taattttttat-aaattttatgtatttaatgcatttgaaattgaactatttaacatttttaaagaataattttgtaatttagaatgctta 1600951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 216 - 311
Target Start/End: Original strand, 45359264 - 45359359
Alignment:
Q  216 attttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaaaaatgc 311  Q
    |||||||||||||||| || |||| ||| |||||||||||||||||||||||||||||| | || |||||  ||||  ||||| |||||| |||||    
T  45359264 attttttatgaaaattcatatattcaatgcattgaaaattgaactatttaacttttttaaataacaatttcttaatccaaaatccttaaagaatgc 45359359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 206 - 286
Target Start/End: Original strand, 50974581 - 50974661
Alignment:
Q  206 ttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataatttt 286  Q
    |||||||||||||| | |||||||| |||||| ||||| ||| |||||||||| ||||| ||||||||| | |||||||||    
T  50974581 ttaaatggtaatttatcatgaaaatatatgtaattaatgcatcgaaaattgaaatatttgacttttttataaaataatttt 50974661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 293
Target Start/End: Original strand, 1048689 - 1048763
Alignment:
Q  218 tttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaattt 293  Q
    |||||||||||| ||||| ||| ||  ||||||||||||||||||||||| |||||| ||||||||||| ||||||    
T  1048689 tttttatgaaaaattatgcattcaacgcattgaaaattgaactatttaac-tttttaaagaataattttttaattt 1048763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 206 - 274
Target Start/End: Original strand, 5115613 - 5115681
Alignment:
Q  206 ttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaactttttta 274  Q
    ||||||||||| ||||| || |||||| |||| ||||| ||||| |||||||| |||||||||||||||    
T  5115613 ttaaatggtaaatttttttgtaaatttgtgtaattaatgcattggaaattgaaatatttaactttttta 5115681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 213 - 305
Target Start/End: Original strand, 46592483 - 46592575
Alignment:
Q  213 gtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaa 305  Q
    |||| |||||||||||| || | ||||||||| |||| ||||| |||| ||| ||||||||| ||||||| || ||||||||  |||||||||    
T  46592483 gtaactttttatgaaaacttgtctatttaatatattggaaattaaactgtttgacttttttaaagaataacttcctaatttagcatgcttaaa 46592575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 305
Target Start/End: Original strand, 10370411 - 10370490
Alignment:
Q  226 aaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaa 305  Q
    ||||| |||||||||||||  ||  |||||||| ||||||||||||||| | ||||||||  ||||||||||| ||||||    
T  10370411 aaaatatatgtatttaatattttagaaattgaattatttaacttttttaaaaaataatttcataatttaaaatacttaaa 10370490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 232
Target Start/End: Complemental strand, 43561986 - 43561928
Alignment:
Q  174 taacgagtgtctcgagacactctttaaaggtcttaaatggtaattttttatgaaaattt 232  Q
    |||||||||||||  |||||| ||||| | ||||||||||||| |||||||||||||||    
T  43561986 taacgagtgtctcatgacactttttaaggatcttaaatggtaagtttttatgaaaattt 43561928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 305
Target Start/End: Original strand, 39912221 - 39912316
Alignment:
Q  213 gtaattttttatgaaaatttatgtatt---taatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaa 305  Q
    |||||||||||||||||| ||||||||   ||||| ||| ||||||||| | ||| ||||||||| | ||||| || ||||||||  |||||||||    
T  39912221 gtaattttttatgaaaatctatgtatttaataatatattaaaaattgaattgtttgacttttttaaataataacttcctaatttagcatgcttaaa 39912316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 334
Target Start/End: Complemental strand, 40053393 - 40053264
Alignment:
Q  205 cttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaa 304  Q
    ||||||| |||| ||||||||||| ||| |||| | |||  |||||||||||||   ||| || |||||| |||| ||||  |||||||| |||||||||    
T  40053393 cttaaatagtaactttttatgaaagtttgtgtaataaatgtattgaaaattgaaaactttgacatttttaaagaacaattacctaatttagaatgcttaa 40053294  T
Q  305 aaaatgctccagtaacattcgttaacaaga 334  Q
    ||| ||| | ||  ||| ||||||||||||    
T  40053293 aaagtgcactagagacactcgttaacaaga 40053264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 204 - 310
Target Start/End: Complemental strand, 41019601 - 41019495
Alignment:
Q  204 tcttaaatggtaattttttatgaaaa-tttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaattt-aaaatgct 301  Q
    |||||||| ||||||||||||||||| |||||||||| |||  |||   |||| || |||||||| |||||| ||| ||||||| |||||| ||||| ||    
T  41019601 tcttaaatagtaattttttatgaaaagtttatgtattcaatgtatt--taatttaaatatttaacatttttaaagagtaattttttaatttaaaaatcct 41019504  T
Q  302 taaaaaatg 310  Q
    |||||||||    
T  41019503 taaaaaatg 41019495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 258
Target Start/End: Original strand, 44584040 - 44584109
Alignment:
Q  189 gacactctttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaa 258  Q
    ||||||| |||||| | ||| || |||| |||||||||||| || || ||||||||||||||||||||||    
T  44584040 gacactcattaaagattttagatagtaagtttttatgaaaacttgtgcatttaatacattgaaaattgaa 44584109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 286
Target Start/End: Original strand, 28171509 - 28171569
Alignment:
Q  226 aaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataatttt 286  Q
    |||||||||||| | ||| |||| ||||||||| ||||||||||||||| | |||||||||    
T  28171509 aaaatttatgtaatgaatgcattaaaaattgaaatatttaacttttttataaaataatttt 28171569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 307
Target Start/End: Complemental strand, 42787820 - 42787760
Alignment:
Q  247 ttgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaaaa 307  Q
    |||||||||||||||||||| |||||||   |||||||| |||||||| ||| ||||||||    
T  42787820 ttgaaaattgaactatttaatttttttaataaataatttcctaatttagaatacttaaaaa 42787760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 6983013 - 6983076
Alignment:
Q  222 tatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattt 285  Q
    |||||||||||||||||  ||| |||||||||||||| ||||| ||| |||||  |||||||||    
T  6983013 tatgaaaatttatgtatccaatgcattgaaaattgaaatatttgactcttttaatgaataattt 6983076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 218 - 273
Target Start/End: Complemental strand, 51237659 - 51237604
Alignment:
Q  218 tttttatgaaaatttatgtatttaatacattgaaaattgaactatttaactttttt 273  Q
    ||||||||||||||| | ||||| |||||||||||||| |||| ||||| ||||||    
T  51237659 tttttatgaaaatttgtatatttgatacattgaaaattaaactgtttaattttttt 51237604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 264
Target Start/End: Complemental strand, 2120545 - 2120487
Alignment:
Q  206 ttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactattt 264  Q
    |||||||  |||||||||||||| |||||||| |||||| ||| ||||||||| |||||    
T  2120545 ttaaatgacaattttttatgaaattttatgtaattaatatattaaaaattgaaatattt 2120487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 274
Target Start/End: Original strand, 5229026 - 5229109
Alignment:
Q  189 gacactctttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaactttttta 274  Q
    ||||||||||||   | ||||||||||| ||||||| ||||| |  ||| |||||||||||||||| ||| ||||||| |||||||    
T  5229026 gacactctttaagatttttaaatggtaactttttataaaaatgt--gtaattaatacattgaaaatcgaaatatttaaatttttta 5229109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 264
Target Start/End: Original strand, 18945145 - 18945191
Alignment:
Q  218 tttttatgaaaatttatgtatttaatacattgaaaattgaactattt 264  Q
    ||||||||||||||| |||||| ||||||||| |||||||| |||||    
T  18945145 tttttatgaaaatttgtgtattcaatacattgtaaattgaattattt 18945191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 305
Target Start/End: Original strand, 4220622 - 4220735
Alignment:
Q  192 actctttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaat 291  Q
    ||||||||||||||||||||||||| ||| ||||||| ||| | || | |||   ||  ||||| || ||||| ||||| ||| | ||||||||  ||||    
T  4220622 actctttaaaggtcttaaatggtaagtttctatgaaattttgtataatcaatgtgttagaaattaaaatatttgactttcttaaaaaataatttcataat 4220721  T
Q  292 ttaaaatgcttaaa 305  Q
    || |||||||||||    
T  4220722 ttgaaatgcttaaa 4220735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 316
Target Start/End: Original strand, 10110233 - 10110361
Alignment:
Q  187 gagacactctttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataatttt 286  Q
    |||||||||||||||  ||| ||| | |||  |||||| ||||||| || || || |||||||||||||||| |  |||| ||||||| | |||||| ||    
T  10110233 gagacactctttaaacatctaaaaagataaagttttataaaaatttgtgcatatattacattgaaaattgaagttcttaattttttta-aaaataatatt 10110331  T
Q  287 ctaatttaaaatgcttaaaaaatgctccag 316  Q
     |||||  ||||| ||||||| ||||||||    
T  10110332 ttaattagaaatggttaaaaagtgctccag 10110361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 39420859 - 39420814
Alignment:
Q  227 aaatttatgtatttaatacattgaaaattgaactatttaacttttt 272  Q
    |||||||||  || ||| ||||||||||||||||||||||||||||    
T  39420859 aaatttatgatttcaatgcattgaaaattgaactatttaacttttt 39420814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 8454324 - 8454372
Alignment:
Q  206 ttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaat 254  Q
    |||||||||||||||||||||||||  ||||| | ||| ||||||||||    
T  8454324 ttaaatggtaattttttatgaaaatgcatgtagtaaatgcattgaaaat 8454372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 258
Target Start/End: Complemental strand, 9931874 - 9931822
Alignment:
Q  206 ttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaa 258  Q
    ||||||||||||||||||| ||| ||| |||| |||||  |||||||||||||    
T  9931874 ttaaatggtaattttttataaaagtttgtgtaattaatgtattgaaaattgaa 9931822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 285
Target Start/End: Complemental strand, 14758675 - 14758579
Alignment:
Q  189 gacactctttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattt 285  Q
    |||||||||||| |   |||||| |||| |||||||||||| || || ||| ||| ||| |||||||||| | || ||||||||||  |||||||||    
T  14758675 gacactctttaaggactttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttttaaggaataattt 14758579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 26928317 - 26928253
Alignment:
Q  191 cactctttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaatt 255  Q
    |||||||||||| | ||| || |||| |||||| ||||||||||| ||||| ||||||| |||||    
T  26928317 cactctttaaagattttagatagtaaatttttacgaaaatttatggatttagtacattggaaatt 26928253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 272
Target Start/End: Original strand, 38570379 - 38570427
Alignment:
Q  224 tgaaaatttatgtatttaatacattgaaaattgaactatttaacttttt 272  Q
    |||||| ||||||| ||||| |||||||||||||| ||||| |||||||    
T  38570379 tgaaaacttatgtaattaatgcattgaaaattgaaatatttgacttttt 38570427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 270
Target Start/End: Complemental strand, 38643918 - 38643854
Alignment:
Q  206 ttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttt 270  Q
    ||||||| ||| ||||||||||||| ||| |||| |||||||  |||||| || |||||||||||    
T  38643918 ttaaatgataaatttttatgaaaatgtatttattcaatacatcaaaaatttaaatatttaacttt 38643854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 189 - 305
Target Start/End: Complemental strand, 13538512 - 13538396
Alignment:
Q  189 gacactctttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttct 288  Q
    |||||||||||| |||||||||| |||| |||||||||||| ||||||||| ||| ||||| |||||||| ||||| | ||||||| |||||||||||||    
T  13538512 gacactctttaagggtcttaaatagtaactttttatgaaaagttatgtattcaatgcattggaaattgaattatttgaattttttaaagaataattttct 13538413  T
Q  289 aatttaaaatgcttaaa 305  Q
    ||||||  |||||||||    
T  13538412 aatttagtatgcttaaa 13538396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 191 - 311
Target Start/End: Complemental strand, 41544092 - 41543971
Alignment:
Q  191 cactctttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactattt-aacttttttagagaataattttcta 289  Q
    |||||||||| ||||||||||  |||||||||||||||| ||||||||| | | ||||| |||||||||||||| || ||||||| |||||||||| |||    
T  41544092 cactctttaagggtcttaaataataattttttatgaaaaattatgtattcattgcattggaaattgaactatttgaatttttttaaagaataatttccta 41543993  T
Q  290 atttaaaatgcttaaaaaatgc 311  Q
    |||||| ||||||||| |||||    
T  41543992 atttaatatgcttaaagaatgc 41543971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 187 - 305
Target Start/End: Complemental strand, 38292487 - 38292368
Alignment:
Q  187 gagacactctttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaactttt-ttagagaataattt 285  Q
    |||| ||||||||  |||| ||||||  ||||||||||||||| || |||||||||| |||||| ||||||||||||| |||||| | | ||||||||||    
T  38292487 gagaaactctttatgggtcataaatgaaaattttttatgaaaagttgtgtatttaatgcattgataattgaactatttcacttttctaaaagaataattt 38292388  T
Q  286 tctaatttaaaatgcttaaa 305  Q
     |||||||||||||||||||    
T  38292387 cctaatttaaaatgcttaaa 38292368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 186 - 307
Target Start/End: Original strand, 14663166 - 14663288
Alignment:
Q  186 cgagacactctttaaaggtcttaaatggtaattttttatgaaaa-tttatgtatttaatacattgaaaattgaactatttaacttttttagagaataatt 284  Q
    |||| |||||||||| ||||||||||  ||||||||||  |||| ||| || |||||||  |||| |||||||||||||| |||| |||| |||||||||    
T  14663166 cgaggcactctttaagggtcttaaataataattttttaaaaaaaatttgtgcatttaatgtattggaaattgaactatttgacttatttaaagaataatt 14663265  T
Q  285 ttctaatttaaaatgcttaaaaa 307  Q
    || ||||||||||||||||||||    
T  14663266 ttttaatttaaaatgcttaaaaa 14663288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 208 - 282
Target Start/End: Original strand, 40347956 - 40348030
Alignment:
Q  208 aaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataa 282  Q
    |||| |||||||||||||||||||| ||||||||||||||| ||||||||||| ||| ||||||||| |||||||    
T  40347956 aaatagtaattttttatgaaaatttgtgtatttaatacattaaaaattgaactgtttgacttttttaaagaataa 40348030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 217 - 294
Target Start/End: Complemental strand, 32859873 - 32859796
Alignment:
Q  217 ttttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaattta 294  Q
    ||||||||||||| || |||||||||||||||| |||||||||| ||| ||||||||| ||||||| || ||||||||    
T  32859873 ttttttatgaaaacttgtgtatttaatacattggaaattgaactgtttgacttttttaaagaataacttcctaattta 32859796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 213 - 305
Target Start/End: Complemental strand, 44195599 - 44195507
Alignment:
Q  213 gtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaa 305  Q
    |||| ||||||| ||||  | |||||||||| ||||| |||||||| |||||||||||| || ||||||||||  ||||||||||||||||||    
T  44195599 gtaactttttataaaaacatgtgtatttaatgcattgtaaattgaattatttaacttttgtaaagaataatttcttaatttaaaatgcttaaa 44195507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 218 - 307
Target Start/End: Complemental strand, 18684449 - 18684360
Alignment:
Q  218 tttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaaaa 307  Q
    ||||||||||||||| |||||||||||||||| |||||||| | | | ||||||||| ||||||| || ||||||||  |||||| ||||    
T  18684449 tttttatgaaaatttgtgtatttaatacattggaaattgaattgtatgacttttttaaagaataacttcctaatttagcatgctttaaaa 18684360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 206 - 272
Target Start/End: Complemental strand, 13197349 - 13197283
Alignment:
Q  206 ttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttt 272  Q
    ||||||| ||||||||||| |||||||||||| ||||| |||| ||||||||| ||||| |||||||    
T  13197349 ttaaatgataattttttataaaaatttatgtaattaatgcattaaaaattgaaatatttgacttttt 13197283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 305
Target Start/End: Complemental strand, 8964477 - 8964392
Alignment:
Q  220 tttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaa 305  Q
    ||||||||||||| |||| | ||| ||||| |||||||| ||||| ||||||||| |||||||||   ||||||| ||||||||||    
T  8964477 tttatgaaaatttgtgtaatcaatgcattggaaattgaaatattttacttttttaaagaataattacttaatttagaatgcttaaa 8964392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 258
Target Start/End: Complemental strand, 16944881 - 16944812
Alignment:
Q  189 gacactctttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaa 258  Q
    |||||| |||||||   ||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||    
T  16944881 gacactttttaaagacgttaaatggtaagtttttataaaaatttgtgtattcaatacattgaaaattgaa 16944812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 258
Target Start/End: Complemental strand, 17015546 - 17015477
Alignment:
Q  189 gacactctttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaa 258  Q
    |||||| |||||||   ||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||    
T  17015546 gacactttttaaagacgttaaatggtaagtttttataaaaatttgtgtattcaatacattgaaaattgaa 17015477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 285
Target Start/End: Original strand, 37082210 - 37082286
Alignment:
Q  208 aaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattt 285  Q
    |||||||||  |||||||||||||| || ||||| |||||||||||||||| | ||| ||||||||| ||||||||||    
T  37082210 aaatggtaagcttttatgaaaatttgtgcatttattacattgaaaattgaagt-ttttacttttttaaagaataattt 37082286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 205 - 305
Target Start/End: Original strand, 9049156 - 9049256
Alignment:
Q  205 cttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaa 304  Q
    |||||||  ||| ||||||| ||||||| |||| ||||| ||||||||||||||  ||||||| |||| | |||||||||   |||||||| ||||||||    
T  9049156 cttaaataataactttttataaaaatttgtgtaattaatgcattgaaaattgaaaaatttaacattttaaaagaataattacttaatttaacatgcttaa 9049255  T
Q  305 a 305  Q
    |    
T  9049256 a 9049256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 311
Target Start/End: Original strand, 45372734 - 45372829
Alignment:
Q  217 ttttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataatttt-ctaatttaaaatgcttaaaaaatgc 311  Q
    |||||||| ||||  | |||||||||| ||||  ||||| ||||||| |||||||||| | ||||||||| |||||||| |||| |||||||||||    
T  45372734 ttttttataaaaacatgtgtatttaatgcattagaaattaaactattaaacttttttaaaaaataatttttctaatttagaatgtttaaaaaatgc 45372829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 307
Target Start/End: Complemental strand, 35317908 - 35317819
Alignment:
Q  217 ttttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaaaa 307  Q
    |||||||||||||||| |||||||||| || || ||| |||||| ||| ||||||||  ||||||| ||||||||||| || | |||||||    
T  35317908 ttttttatgaaaatttgtgtatttaatgca-tgcaaaatgaactgtttgacttttttcaagaataactttctaatttagaacgtttaaaaa 35317819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 1679931 - 1679980
Alignment:
Q  206 ttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaatt 255  Q
    ||||||||||||||||||| ||||||  |||||||||| |||||||||||    
T  1679931 ttaaatggtaattttttataaaaattattgtatttaatgcattgaaaatt 1679980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 284
Target Start/End: Complemental strand, 20064997 - 20064932
Alignment:
Q  219 ttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataatt 284  Q
    ||||||||||| || ||||||||||||||||||||||| | || || ||||||| | |||||||||    
T  20064997 ttttatgaaaaattgtgtatttaatacattgaaaattgtaatagttgactttttaaaagaataatt 20064932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 218 - 285
Target Start/End: Original strand, 6761745 - 6761812
Alignment:
Q  218 tttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattt 285  Q
    ||||| |||||||||||||| | ||| ||||| |||||||| ||||| ||||||||| ||||| ||||    
T  6761745 tttttttgaaaatttatgtaatcaatgcattggaaattgaaatatttgacttttttatagaatgattt 6761812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 217 - 284
Target Start/End: Original strand, 31017326 - 31017393
Alignment:
Q  217 ttttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataatt 284  Q
    ||||| ||||||| || |||||| ||| ||||||||||| || ||||| ||||||||| |||||||||    
T  31017326 tttttaatgaaaagttgtgtattaaatgcattgaaaattaaaatatttgacttttttaaagaataatt 31017393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 218 - 285
Target Start/End: Original strand, 33962962 - 33963029
Alignment:
Q  218 tttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattt 285  Q
    |||||||||||| || || ||| ||| |||||||||||||| | || |||||||||| ||||||||||    
T  33962962 tttttatgaaaaattgtgcattcaatgcattgaaaattgaagtgttaaacttttttaaagaataattt 33963029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 305
Target Start/End: Complemental strand, 7270351 - 7270298
Alignment:
Q  251 aaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaa 305  Q
    |||||||||||||||||||||||| | ||||||||| ||||||| |||| |||||    
T  7270351 aaattgaactatttaactttttta-aaaataattttttaatttagaatgtttaaa 7270298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 274
Target Start/End: Complemental strand, 11278830 - 11278764
Alignment:
Q  208 aaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaactttttta 274  Q
    ||||| ||| ||||||| ||||| | ||||  |||| |||||||||||||| |||||||||||||||    
T  11278830 aaatgataaatttttataaaaatatgtgtaactaatgcattgaaaattgaaatatttaactttttta 11278764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 309
Target Start/End: Complemental strand, 35312201 - 35312099
Alignment:
Q  207 taaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaaa 306  Q
    ||||| |||| | ||||| ||||| |||||| | ||||||||| ||||| || ||||||| ||||||| |||| | || | || |||| |||||||||||    
T  35312201 taaatagtaaatatttataaaaatgtatgtaatgaatacattgtaaattaaaatatttaatttttttaaagaaaatttgtttattttagaatgcttaaaa 35312102  T
Q  307 aat 309  Q
    |||    
T  35312101 aat 35312099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 258
Target Start/End: Original strand, 43678556 - 43678610
Alignment:
Q  204 tcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaa 258  Q
    ||||||||| ||||||||| | ||| ||| |||| ||||||||||||||||||||    
T  43678556 tcttaaatgataattttttttaaaagtttgtgtaattaatacattgaaaattgaa 43678610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 264
Target Start/End: Complemental strand, 6220909 - 6220832
Alignment:
Q  187 gagacactctttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactattt 264  Q
    |||||||| |||||| |  |||||| |||| ||||||||||||||||| ||  ||||| |||| |||||||| |||||    
T  6220909 gagacactgtttaaaagctttaaatagtaaatttttatgaaaatttatataactaatatattggaaattgaaatattt 6220832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 305
Target Start/End: Complemental strand, 10348998 - 10348950
Alignment:
Q  257 aactatttaacttttttagagaataattttctaatttaaaatgcttaaa 305  Q
    ||||||||||||||||||   ||||||||  ||||||||||||||||||    
T  10348998 aactatttaacttttttaataaataatttgttaatttaaaatgcttaaa 10348950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 285
Target Start/End: Original strand, 33275908 - 33275979
Alignment:
Q  213 gtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattt 285  Q
    |||||| ||||||||||| | ||||| || |  ||||||||||||| ||||||||||||||| | ||||||||    
T  33275908 gtaattgtttatgaaaatgtgtgtatcta-tgtattgaaaattgaaatatttaacttttttaaaaaataattt 33275979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 7e-28; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 194 - 305
Target Start/End: Original strand, 39691109 - 39691220
Alignment:
Q  194 tctttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaattt 293  Q
    ||||||| | |||||||| |||||||||||||||||||| |||||| ||| |||||||||||||||||||| ||||||||| ||||||||||| |||| |    
T  39691109 tctttaaggatcttaaatagtaattttttatgaaaatttgtgtattcaatgcattgaaaattgaactatttgacttttttaaagaataattttttaatgt 39691208  T
Q  294 aaaatgcttaaa 305  Q
      ||||||||||    
T  39691209 ggaatgcttaaa 39691220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 189 - 305
Target Start/End: Original strand, 1502660 - 1502777
Alignment:
Q  189 gacactctttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactattt-aacttttttagagaataattttc 287  Q
    ||||||||||||  |||| || | ||||||||||||||||||||  ||||||||| |||||||||||||||| ||| || ||||||| |||||||||| |    
T  1502660 gacactctttaagagtctaaagtagtaattttttatgaaaatttgcgtatttaatgcattgaaaattgaactgtttgaatttttttaaagaataatttcc 1502759  T
Q  288 taatttaaaatgcttaaa 305  Q
    ||||||| |||| |||||    
T  1502760 taatttagaatgtttaaa 1502777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 219 - 294
Target Start/End: Original strand, 37564352 - 37564427
Alignment:
Q  219 ttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaattta 294  Q
    ||||||||||| || |||||||||||||||| |||||||||||||| ||||||||| ||||||||||  |||||||    
T  37564352 ttttatgaaaacttgtgtatttaatacattggaaattgaactatttgacttttttaaagaataatttcttaattta 37564427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 191 - 305
Target Start/End: Complemental strand, 25280042 - 25279929
Alignment:
Q  191 cactctttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaa 290  Q
    ||||||||||  | || |||| |||| |||||||||||| ||||||||||||||||||| |||||||| ||||| || |||||| ||||||| || ||||    
T  25280042 cactctttaagagcctaaaatagtaaatttttatgaaaacttatgtatttaatacattggaaattgaattatttgac-tttttaaagaataacttcctaa 25279944  T
Q  291 tttaaaatgcttaaa 305  Q
    ||||  |||||||||    
T  25279943 tttagcatgcttaaa 25279929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 191 - 305
Target Start/End: Complemental strand, 31265111 - 31264997
Alignment:
Q  191 cactctttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaa 290  Q
    ||||||||||  | || |||| |||| |||||||||||| || |||||||||||||||| |||||||| | ||| ||||||||| ||||||| || ||||    
T  31265111 cactctttaagagcctaaaatagtaactttttatgaaaacttgtgtatttaatacattggaaattgaattgtttgacttttttaaagaataacttcctaa 31265012  T
Q  291 tttaaaatgcttaaa 305  Q
    ||||  |||||||||    
T  31265011 tttagcatgcttaaa 31264997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 42022640 - 42022699
Alignment:
Q  246 attgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaa 305  Q
    |||| |||||||||||||| ||||||||| | ||||||||| ||||||||||||||||||    
T  42022640 attggaaattgaactatttgacttttttaaaaaataattttttaatttaaaatgcttaaa 42022699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 204 - 310
Target Start/End: Complemental strand, 9604313 - 9604207
Alignment:
Q  204 tcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgctta 303  Q
    |||||||||||||| |||||| |||| |||||||||| || ||||| ||||| || |||||||| |||| | |  ||| |||| ||||||||||| ||||    
T  9604313 tcttaaatggtaatattttataaaaaattatgtattttatgcattggaaattaaaatatttaaccttttaaaattatatttttttaatttaaaattctta 9604214  T
Q  304 aaaaatg 310  Q
    || ||||    
T  9604213 aagaatg 9604207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 213 - 294
Target Start/End: Original strand, 29487073 - 29487155
Alignment:
Q  213 gtaattttttatgaaaatttatgtatttaatacattgaaaattgaactattt-aacttttttagagaataattttctaattta 294  Q
    |||| ||||||| ||||| | |||||| ||| |||||||||||||||||||| |||||||||| ||||||||||  |||||||    
T  29487073 gtaactttttataaaaatatgtgtattaaatgcattgaaaattgaactatttaaacttttttaaagaataatttcttaattta 29487155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 217 - 310
Target Start/End: Complemental strand, 34477901 - 34477807
Alignment:
Q  217 ttttttatgaaaatttatgtatttaatacattgaaaattgaactatttaactt-ttttagagaataattttctaatttaaaatgcttaaaaaatg 310  Q
    |||||||||||||||||||||||| ||  |||| ||||| ||| ||||||||| |||||| |||||||||  |||| | ||||||||||| ||||    
T  34477901 ttttttatgaaaatttatgtatttgatgtattggaaattaaaccatttaactttttttagtgaataatttcttaatctgaaatgcttaaagaatg 34477807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 192 - 274
Target Start/End: Original strand, 41105991 - 41106073
Alignment:
Q  192 actctttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaactttttta 274  Q
    ||||||||| |  |||||||||||| |||||| ||||| || || ||| ||| |||||||||||||||||||| |||||||||    
T  41105991 actctttaaggaccttaaatggtaagtttttacgaaaaattgtgaattcaatgcattgaaaattgaactatttgactttttta 41106073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 333
Target Start/End: Complemental strand, 11041126 - 11041039
Alignment:
Q  246 attgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaaaaatgctccagtaacattcgttaacaag 333  Q
    ||||||||||||| |||||||||||||||  |||| ||||   | ||||||||||||||| ||| | |||  ||||||||||||||||    
T  11041126 attgaaaattgaaatatttaacttttttatggaatgatttctcattttaaaatgcttaaagaataccccaaaaacattcgttaacaag 11041039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 15352117 - 15352176
Alignment:
Q  246 attgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaa 305  Q
    |||| |||||||||||||| ||||||||| ||||||||||| ||||||| |||| |||||    
T  15352117 attggaaattgaactatttgacttttttacagaataattttttaatttagaatgtttaaa 15352176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 312
Target Start/End: Complemental strand, 25382694 - 25382615
Alignment:
Q  234 tgtatttaatacattgaaaattgaactatttaactttttt-agagaataattttctaatttaaaatgcttaaaaaatgct 312  Q
    |||||||||| ||||| |||||| ||||||| |||||||| | ||||||||||  ||||||  |||||||||||||||||    
T  25382694 tgtatttaatgcattggaaattggactattttactttttttaaagaataatttcttaatttggaatgcttaaaaaatgct 25382615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 264
Target Start/End: Complemental strand, 6270417 - 6270359
Alignment:
Q  206 ttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactattt 264  Q
    |||||||||| |||||||| ||||||| |||| |||||| ||||||||||||| |||||    
T  6270417 ttaaatggtatttttttataaaaatttgtgtaattaatatattgaaaattgaaatattt 6270359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 254
Target Start/End: Original strand, 41422249 - 41422327
Alignment:
Q  176 acgagtgtctcgagacactctttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaat 254  Q
    |||||| ||||  ||||||||||||   | ||||||| ||||||||||||||||| |||||| ||||| ||||||||||    
T  41422249 acgagtttctccggacactctttaatacttttaaatgataattttttatgaaaatatatgtaattaatgcattgaaaat 41422327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 305
Target Start/End: Original strand, 2376734 - 2376834
Alignment:
Q  205 cttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaa 304  Q
    ||||||| |||| ||||||||||| ||||| || ||||||| ||  ||||||||   ||| |  |||||| ||||||||| | |||||||||||||||||    
T  2376734 cttaaatagtaactttttatgaaagtttatataattaatacgttagaaattgaaaactttgatatttttaaagaataattatttaatttaaaatgcttaa 2376833  T
Q  305 a 305  Q
    |    
T  2376834 a 2376834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 33285932 - 33285984
Alignment:
Q  206 ttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaa 258  Q
    |||||| |||| |||||||||||| || |||||||||||||| ||||||||||    
T  33285932 ttaaatagtaaatttttatgaaaaattgtgtatttaatacatcgaaaattgaa 33285984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 251
Target Start/End: Original strand, 26745159 - 26745214
Alignment:
Q  196 tttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaa 251  Q
    ||||||| | ||||||| ||||||| ||||||||||| |||||| |||||||||||    
T  26745159 tttaaagattttaaatgataattttatatgaaaatttgtgtattaaatacattgaa 26745214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 258
Target Start/End: Original strand, 4217473 - 4217539
Alignment:
Q  192 actctttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaa 258  Q
    ||||||||||  ||||||||| |||  ||||||||||||||||||||||| || |||  ||||||||    
T  4217473 actctttaaaattcttaaatgataaacttttatgaaaatttatgtatttagtatattagaaattgaa 4217539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 263
Target Start/End: Original strand, 40914585 - 40914635
Alignment:
Q  213 gtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatt 263  Q
    |||| ||||||||||||||| || ||||||| |||||||||||||| ||||    
T  40914585 gtaaatttttatgaaaatttgtgaatttaatgcattgaaaattgaagtatt 40914635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 285
Target Start/End: Original strand, 11727905 - 11727985
Alignment:
Q  204 tcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattt 285  Q
    ||||||||  ||| |||| |||||||||| | ||||||||  ||||||||||||| ||||| || |||||| ||||||||||    
T  11727905 tcttaaataataagttttaatgaaaatttgtatatttaatgtattgaaaattgaagtatttgac-tttttaaagaataattt 11727985  T

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Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 307
Target Start/End: Complemental strand, 12640017 - 12639928
Alignment:
Q  218 tttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaaaa 307  Q
    |||||||||||| || |||| | |||   |||||||| ||| |||||||||||||||   | |||||| |||||||| ||||||||||||    
T  12640017 tttttatgaaaagttgtgtaatcaatgttttgaaaatcgaattatttaacttttttaataattaatttcctaatttagaatgcttaaaaa 12639928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 293
Target Start/End: Original strand, 25163031 - 25163116
Alignment:
Q  208 aaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaattt 293  Q
    |||| |||| ||||||||||| ||||| || || || ||||| |||||||| ||||| |||||||   ||||||||||| ||||||    
T  25163031 aaattgtaaatttttatgaaagtttatttaatttatgcattggaaattgaaatatttgactttttctaagaataattttttaattt 25163116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 272
Target Start/End: Original strand, 44411075 - 44411156
Alignment:
Q  191 cactctttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttt 272  Q
    |||||||||  ||| | |||| ||||| |||||| ||||| | || ||| |||||||||||||||||| | |||||||||||    
T  44411075 cactctttatgggtttaaaatagtaatattttatcaaaatgtgtgcattcaatacattgaaaattgaaatgtttaacttttt 44411156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 305
Target Start/End: Complemental strand, 6073330 - 6073230
Alignment:
Q  205 cttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaa 304  Q
    |||||||||||| |||||||||| ||||||| ||| | | |||| ||||||||| ||||| | ||| | | |||||| |||| |||||   |||||||||    
T  6073330 cttaaatggtaagtttttatgaagatttatgaattcagtgcattaaaaattgaattatttgattttgtaaaagaatatttttttaattaggaatgcttaa 6073231  T
Q  305 a 305  Q
    |    
T  6073230 a 6073230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 285
Target Start/End: Original strand, 10335029 - 10335109
Alignment:
Q  206 ttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaac-ttttttagagaataattt 285  Q
    |||||| |||||||||| ||||||||| | || ||||| |||||||||||  | ||||| || ||||||| ||||||||||    
T  10335029 ttaaattgtaattttttgtgaaaatttgtataattaatgcattgaaaattataatatttgactttttttatagaataattt 10335109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 305
Target Start/End: Complemental strand, 11533332 - 11533232
Alignment:
Q  205 cttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaa 304  Q
    |||||||||||||||||||||||| ||| ||  || | | ||||| ||||||||   ||| || |||||| ||||||||||  |||||||| ||| ||||    
T  11533332 cttaaatggtaattttttatgaaagtttgtgccttcagtgcattggaaattgaaaactttgacatttttaaagaataatttattaatttaacatgtttaa 11533233  T
Q  305 a 305  Q
    |    
T  11533232 a 11533232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 18181237 - 18181285
Alignment:
Q  210 atggtaattttttatgaaaatttatgtatttaatacattgaaaattgaa 258  Q
    |||||||| |||||||||| ||| |||||||| | ||||||||||||||    
T  18181237 atggtaatcttttatgaaagtttgtgtatttattgcattgaaaattgaa 18181285  T

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Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 204 - 298
Target Start/End: Complemental strand, 51039856 - 51039762
Alignment:
Q  204 tcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaat 298  Q
    |||||||  |||| |||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||| ||||||||||| |||||||||||    
T  51039856 tcttaaagcgtaaatttttatgaaaatttatgtattcaattcattgaaaattgaactatttgacttttttatagaataattttttaatttaaaat 51039762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 217 - 305
Target Start/End: Complemental strand, 11692821 - 11692733
Alignment:
Q  217 ttttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaa 305  Q
    |||||||| |||| ||||||||||||||||||| ||||| |||||||| ||||||||| ||||||||||| |||||||| |||||||||    
T  11692821 ttttttataaaaacttatgtatttaatacattgcaaattaaactatttcacttttttaaagaataattttttaatttaatatgcttaaa 11692733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 173 - 274
Target Start/End: Original strand, 46547754 - 46547855
Alignment:
Q  173 ttaacgagtgtctcgagacactctttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttt 272  Q
    |||||||||||  |  |||||||||||| ||||||| || ||||||||||||||||| ||||||||| ||| ||||| |||||||| ||||| |||||||    
T  46547754 ttaacgagtgttcccggacactctttaagggtcttatatagtaattttttatgaaaaattatgtattcaatgcattggaaattgaattatttgacttttt 46547853  T
Q  273 ta 274  Q
    ||    
T  46547854 ta 46547855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 218 - 305
Target Start/End: Original strand, 54290796 - 54290883
Alignment:
Q  218 tttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaa 305  Q
    |||||||||||| || |||||||||||||||| |||||||||| ||| ||||||||| ||||||| || ||||||||  |||||||||    
T  54290796 tttttatgaaaacttgtgtatttaatacattggaaattgaactgtttgacttttttaaagaataacttcctaatttatcatgcttaaa 54290883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 191 - 285
Target Start/End: Complemental strand, 30299394 - 30299300
Alignment:
Q  191 cactctttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattt 285  Q
    |||||||||| ||||||||||| ||| | |||||| |||||| | |||||||| |||||||||||||| || || ||||||||| ||||||||||    
T  30299394 cactctttaagggtcttaaatgataactatttatgcaaatttgtatatttaatgcattgaaaattgaattacttgacttttttaaagaataattt 30299300  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 213 - 305
Target Start/End: Complemental strand, 43804061 - 43803969
Alignment:
Q  213 gtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaa 305  Q
    |||| |||||||||||| || |||||||||||||||| |||||||| | ||| ||||||||| ||||||| |||| ||||||  |||||||||    
T  43804061 gtaactttttatgaaaacttgtgtatttaatacattggaaattgaattgtttgacttttttaaagaataactttccaatttatcatgcttaaa 43803969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 189 - 305
Target Start/End: Original strand, 49197030 - 49197146
Alignment:
Q  189 gacactctttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttct 288  Q
    |||||||||||||| |||| ||| |||| || |||| |||||||| ||||||| || ||||||||||||| | ||| ||||||| | | ||||||||  |    
T  49197030 gacactctttaaagatctttaatagtaagttcttataaaaatttacgtatttagtaaattgaaaattgaattgtttgactttttaaaataataatttatt 49197129  T
Q  289 aatttaaaatgcttaaa 305  Q
    ||||| |||| ||||||    
T  49197130 aatttgaaattcttaaa 49197146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 217 - 307
Target Start/End: Original strand, 45566100 - 45566189
Alignment:
Q  217 ttttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaaaa 307  Q
    |||||| | |||||||||||| | |||||||||||||||||| ||||||||||||| |   ||||||||| ||| ||||||| ||||||||    
T  45566100 ttttttgtaaaaatttatgtaataaatacattgaaaattgaaatatttaactttttaaataaataattttttaa-ttaaaatacttaaaaa 45566189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 175 - 272
Target Start/End: Complemental strand, 47930212 - 47930114
Alignment:
Q  175 aacgagtgtc-tcgagacactctttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttt 272  Q
    |||||||||| |||| ||||| ||||| ||  || | |||||| ||||||||||||||| ||||||||||  |||||||||| || |||||||||||||    
T  47930212 aacgagtgtcatcgaaacactttttaagggatttgattggtaaatttttatgaaaatttgtgtatttaatgtattgaaaattaaaatatttaacttttt 47930114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 305
Target Start/End: Complemental strand, 53040556 - 53040469
Alignment:
Q  218 tttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaa 305  Q
    ||||||||||| ||| |||||| ||||||||| |||||||| ||||| | ||||||| | ||||||||  ||||||| ||| ||||||    
T  53040556 tttttatgaaagtttgtgtattcaatacattggaaattgaagtatttgaattttttaaataataatttcttaatttagaatccttaaa 53040469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 274
Target Start/End: Original strand, 21490591 - 21490677
Alignment:
Q  189 gacactctttaaaggtcttaaatggtaa-ttttttatgaaaatttatgtatttaatacattgaaaattgaactatttaactttttta 274  Q
    |||||||||||||| | ||||||||||| |||||||||||||| | |||  | |||  ||||||||||||| ||||| |||||||||    
T  21490591 gacactctttaaagcttttaaatggtaatttttttatgaaaatatgtgtcatcaatgaattgaaaattgaaatatttgactttttta 21490677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 261
Target Start/End: Complemental strand, 40690302 - 40690232
Alignment:
Q  192 actctttaaag-gtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaacta 261  Q
    ||||||||||| |||||||||||||  |||||||||||| || |||||| |||  ||||||||||||||||    
T  40690302 actctttaaagagtcttaaatggtagctttttatgaaaacttgtgtattcaatgtattgaaaattgaacta 40690232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 286
Target Start/End: Original strand, 1557742 - 1557822
Alignment:
Q  206 ttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataatttt 286  Q
    ||||||| ||||||||||| ||||| |||||| | |||| ||| |||||| || ||||||| ||||||| | |||||||||    
T  1557742 ttaaatgataattttttataaaaatatatgtaatcaatatattaaaaattaaaatatttaatttttttataaaataatttt 1557822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 11404794 - 11404726
Alignment:
Q  217 ttttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattt 285  Q
    |||||||| |||||  ||||| |||||||||| |||||| || ||||||||||||||| | ||||||||    
T  11404794 ttttttataaaaatacatgtaattaatacattaaaaattaaaatatttaacttttttataaaataattt 11404726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 305
Target Start/End: Complemental strand, 31419294 - 31419209
Alignment:
Q  218 tttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaa 305  Q
    ||||| |||||||||||||| | ||||||||||||||| || |||||||  ||||||  |||||||||  | |||| |||||||||||    
T  31419294 tttttttgaaaatttatgtaatcaatacattgaaaatttaaatatttaa--tttttatggaataatttcttcatttgaaatgcttaaa 31419209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 208 - 307
Target Start/End: Original strand, 1829254 - 1829353
Alignment:
Q  208 aaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaaaa 307  Q
    ||||||||| |||||  |||||||| |||||| | ||||||||||||| |||||||| |  |||||| | |||||||| |||| ||| |||  |||||||    
T  1829254 aaatggtaactttttgcgaaaatttgtgtattcagtacattgaaaattaaactatttgatatttttaaaaaataatttactaacttagaatatttaaaaa 1829353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 334
Target Start/End: Original strand, 25299057 - 25299172
Alignment:
Q  219 ttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaaaaatgctccagta 318  Q
    |||||||||| ||| || ||||| | |||||||||||||| | ||||  ||||||| ||||||||||  | |||  ||||||||||||| |||| | |      
T  25299057 ttttatgaaagtttgtgcatttattgcattgaaaattgaaatctttactttttttaaagaataatttctttattagaaatgcttaaaaagtgcttcgggg 25299156  T
Q  319 acattcgttaacaaga 334  Q
    ||| ||||||||||||    
T  25299157 acactcgttaacaaga 25299172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 292
Target Start/End: Original strand, 31625350 - 31625433
Alignment:
Q  209 aatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatt 292  Q
    |||| |||||||||||||||| || |||||||||||||||  | || ||||  ||| ||||||||| ||||||| || ||||||    
T  31625350 aatgataattttttatgaaaacttgtgtatttaatacatttgacatagaacagtttgacttttttaaagaataacttcctaatt 31625433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 239
Target Start/End: Original strand, 1600543 - 1600593
Alignment:
Q  189 gacactctttaaaggtcttaaatggtaattttttatgaaaatttatgtatt 239  Q
    |||||||||||| | |||||||||||||  |||||||||||||| ||||||    
T  1600543 gacactctttaaggatcttaaatggtaaacttttatgaaaatttgtgtatt 1600593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 258
Target Start/End: Original strand, 33072120 - 33072170
Alignment:
Q  208 aaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaa 258  Q
    ||||||||||||||||| ||||||| |||| ||||| ||||| ||||||||    
T  33072120 aaatggtaattttttataaaaatttgtgtaattaatgcattggaaattgaa 33072170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 305
Target Start/End: Original strand, 53364534 - 53364667
Alignment:
Q  174 taacgagtgtctcgagacactctttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaactttttt 273  Q
    |||||||||| ||  ||||||| ||||| |  |||||||||||  |||| ||||||| | |||||||| | ||||  |||||||| ||||| ||||||||    
T  53364534 taacgagtgtttccggacactccttaaaagctttaaatggtaaggttttgtgaaaatatgtgtatttagtgcatttgaaattgaattatttgactttttt 53364633  T
Q  274 agagaataattttct--aatttaaaatgcttaaa 305  Q
      ||||| ||||| |  |||||||||||| ||||    
T  53364634 taagaatgatttttttaaatttaaaatgcctaaa 53364667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 310
Target Start/End: Original strand, 53433211 - 53433297
Alignment:
Q  224 tgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaaaaatg 310  Q
    |||||||||||||| | ||| ||| ||||||| || ||||| ||||||||| ||||||||||  |  ||||||||||| ||| ||||    
T  53433211 tgaaaatttatgtaatcaatgcatcgaaaattaaaatatttgacttttttatagaataatttcttcttttaaaatgctaaaagaatg 53433297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 258
Target Start/End: Original strand, 53766702 - 53766752
Alignment:
Q  208 aaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaa 258  Q
    |||||||||| |||||||||| ||| |||||||| | ||||||||||||||    
T  53766702 aaatggtaatattttatgaaagtttgtgtatttattgcattgaaaattgaa 53766752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 271
Target Start/End: Original strand, 37822608 - 37822661
Alignment:
Q  218 tttttatgaaaatttatgtatttaatacattgaaaattgaactatttaactttt 271  Q
    ||||||||||||| | ||||||||||||||| |||||| || ||||| ||||||    
T  37822608 tttttatgaaaatatgtgtatttaatacattaaaaattaaattatttgactttt 37822661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 270
Target Start/End: Complemental strand, 47507202 - 47507121
Alignment:
Q  189 gacactctttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttt 270  Q
    ||||||||||||||  ||||||| |||| |||||||| |||  ||||||||| ||| ||| ||||||| |  ||||||||||    
T  47507202 gacactctttaaagaccttaaatagtaaatttttatgtaaaaatatgtatttgatatattaaaaattgtagcatttaacttt 47507121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 286
Target Start/End: Complemental strand, 55110115 - 55110046
Alignment:
Q  217 ttttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataatttt 286  Q
    |||||||||||||| |||||| | ||| |||||||||| ||| ||||| | ||||||| | |||||||||    
T  55110115 ttttttatgaaaatatatgtaatcaatgcattgaaaatcgaaatatttgatttttttataaaataatttt 55110046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 4824659 - 4824719
Alignment:
Q  245 cattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaa 305  Q
    |||||||||||||| ||||||| ||||||||  ||||||||  ||||||| ||| ||||||    
T  4824659 cattgaaaattgaagtatttaaattttttagttaataatttcttaatttagaatccttaaa 4824719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 274
Target Start/End: Complemental strand, 24238332 - 24238272
Alignment:
Q  214 taattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaactttttta 274  Q
    |||| |||||||||||||| ||| ||||||| ||||||||| |||  |||| |||||||||    
T  24238332 taatattttatgaaaatttgtgtgtttaatatattgaaaatagaagcatttgactttttta 24238272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 305
Target Start/End: Complemental strand, 24313651 - 24313551
Alignment:
Q  206 ttaaatggtaattttttatgaaaatttatgtatttaa-tacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaa 304  Q
    ||||||| ||| ||||||||||||||| |||| | || | ||||||||||||||   ||| || |||||| ||||||||| | ||||||| |||| ||||    
T  24313651 ttaaatgataactttttatgaaaatttgtgtagtaaaatgcattgaaaattgaaaactttgacatttttaaagaataattgtttaatttagaatgtttaa 24313552  T
Q  305 a 305  Q
    |    
T  24313551 a 24313551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 305
Target Start/End: Original strand, 49003102 - 49003171
Alignment:
Q  234 tgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaa 305  Q
    |||| ||||||||||| |||||||| | ||| |||||||||  ||||||||||||  | |||||||||||||    
T  49003102 tgtaattaatacattggaaattgaaatctttgacttttttatggaataattttct--tataaaatgcttaaa 49003171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 173 - 310
Target Start/End: Complemental strand, 219326 - 219185
Alignment:
Q  173 ttaacgagtgtctcgaga-cactctttaaaggtcttaaatggtaatttttt---atgaaaatttatgtatttaatacattgaaaattgaactatttaact 268  Q
    ||||||||||| || ||| |||| ||||| ||||||||||  |||||||||   || ||||| |||||||||||| ||||| |||||||||||||| |||    
T  219326 ttaacgagtgtttccagaacactttttaagggtcttaaataataatttttttttataaaaatatatgtatttaatgcattggaaattgaactatttgact 219227  T
Q  269 tttttagagaataattttctaatttaaaatgcttaaaaaatg 310  Q
    ||| || |||||||||| ||||||||||||||||||| ||||    
T  219226 tttgtaaagaataatttcctaatttaaaatgcttaaagaatg 219185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 191 - 305
Target Start/End: Complemental strand, 18926441 - 18926327
Alignment:
Q  191 cactctttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaa 290  Q
    |||| ||||| |||| |||||||||| |||||||||||| || |||||| ||| |||||||||||||||||||| || |||||| ||||||||||  | |    
T  18926441 cactttttaagggtcataaatggtaactttttatgaaaagttgtgtattcaatgcattgaaaattgaactatttcacctttttaaagaataatttcatga 18926342  T
Q  291 tttaaaatgcttaaa 305  Q
    |||||||||||||||    
T  18926341 tttaaaatgcttaaa 18926327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 217 - 307
Target Start/End: Original strand, 33922759 - 33922848
Alignment:
Q  217 ttttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaaaa 307  Q
    |||||||| |||| |||||| || ||| |||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||    
T  33922759 ttttttat-aaaacttatgtgttcaatgcattgaaaattgaactatttgacttttttaaagaataattttctaatttagaatgcttaaaaa 33922848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 205 - 305
Target Start/End: Complemental strand, 43996454 - 43996353
Alignment:
Q  205 cttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaac-tatttaacttttttagagaataattttctaatttaaaatgctta 303  Q
    |||||||||  ||||||||| |||||||||| ||||||| ||||||||||||||| |||||||||| |||| ||||||||||||||| |||  |||||||    
T  43996454 cttaaatggagattttttataaaaatttatgcatttaatgcattgaaaattgaacttatttaacttgtttaaagaataattttctaacttagtatgctta 43996355  T
Q  304 aa 305  Q
    ||    
T  43996354 aa 43996353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 213 - 332
Target Start/End: Complemental strand, 35875177 - 35875059
Alignment:
Q  213 gtaattttttatgaaaatttatgtattt-aatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaaaaatgc 311  Q
    |||| ||||||||||||||||| ||||| |||||||| ||| |||||||||||||||||||||   ||||||||||||||||| |||||||||| | |||    
T  35875177 gtaactttttatgaaaatttat-tatttcaatacattaaaagttgaactatttaacttttttaattaataattttctaatttataatgcttaaagagtgc 35875079  T
Q  312 tccagtaacattcgttaacaa 332  Q
     || | |||||||||||||||    
T  35875078 -cctgaaacattcgttaacaa 35875059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 202 - 305
Target Start/End: Complemental strand, 34681795 - 34681692
Alignment:
Q  202 ggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgct 301  Q
    |||||||||| |||| ||||||| |||| || |||||||||| ||||| |||||||||||||| |||||| || | |||||||| |||||||| ||||||    
T  34681795 ggtcttaaatagtaactttttataaaaacttgtgtatttaatgcattggaaattgaactatttgacttttgtaaaaaataatttcctaatttagaatgct 34681696  T
Q  302 taaa 305  Q
    ||||    
T  34681695 taaa 34681692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 226 - 334
Target Start/End: Complemental strand, 27338341 - 27338233
Alignment:
Q  226 aaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaaaaatgctccagtaacattcg 325  Q
    ||||||| ||||||||||| |||| |||||||||| ||| | ||||||| |||||||||||||||||||  ||||||||| | ||| |||  |||| |||    
T  27338341 aaaatttgtgtatttaatatattggaaattgaactgtttgatttttttaaagaataattttctaatttagcatgcttaaagagtgccccaagaacactcg 27338242  T
Q  326 ttaacaaga 334  Q
    || ||||||    
T  27338241 ttcacaaga 27338233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 218 - 294
Target Start/End: Original strand, 35599821 - 35599897
Alignment:
Q  218 tttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaattta 294  Q
    |||||||||||| ||||||||| ||| |||||||| ||||||||||| | ||||||| |||||||||| ||||||||    
T  35599821 tttttatgaaaagttatgtattcaatgcattgaaatttgaactatttgaattttttaaagaataatttcctaattta 35599897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 190 - 301
Target Start/End: Complemental strand, 35567231 - 35567118
Alignment:
Q  190 acactctttaaa-ggtcttaaatggtaa-ttttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttc 287  Q
    |||||||||||| ||| ||||||| ||| |||||||| ||||| | ||||||||||  |||| ||||| || ||||| ||||||||| | ||||||||||    
T  35567231 acactctttaaaaggttttaaatgataacttttttataaaaatatgtgtatttaatgtattggaaattaaaatatttgacttttttaaaaaataattttc 35567132  T
Q  288 taatttaaaatgct 301  Q
    |||||| |||||||    
T  35567131 taatttgaaatgct 35567118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 189 - 305
Target Start/End: Complemental strand, 36973454 - 36973336
Alignment:
Q  189 gacactctttaaaggtcttaaatggtaatttttt-atgaaaatttatgtatttaatacattgaaaattgaactattt-aacttttttagagaataatttt 286  Q
    |||||||||||| ||| |||||| |||||||||| |||||||||| | |||||| | ||||| |||||||| ||||| |  ||||||| ||||||| ||     
T  36973454 gacactctttaagggttttaaatagtaatttttttatgaaaatttgtatatttattgcattggaaattgaattatttgattttttttaaagaataacttc 36973355  T
Q  287 ctaatttaaaatgcttaaa 305  Q
    |||||||  ||||||||||    
T  36973354 ctaatttggaatgcttaaa 36973336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 208 - 288
Target Start/End: Complemental strand, 37798033 - 37797953
Alignment:
Q  208 aaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttct 288  Q
    |||||||||  ||||||||||||||||| ||||| || ||||||||||||| | ||||| ||||| | ||| |||||||||    
T  37798033 aaatggtaagattttatgaaaatttatgcatttattatattgaaaattgaagtctttaattttttgaaagagtaattttct 37797953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 294
Target Start/End: Complemental strand, 9031769 - 9031707
Alignment:
Q  232 tatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaattta 294  Q
    |||||||||||| |||||||||||||| |||| |||||||| |  |||||||||| |||||||    
T  9031769 tatgtatttaatgcattgaaaattgaagtattcaactttttaaatgaataattttttaattta 9031707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 306
Target Start/End: Original strand, 22688960 - 22689058
Alignment:
Q  208 aaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaaa 306  Q
    |||| |||||||||||||| || || |||||||||| |||| ||||||||| |  || ||||||||| ||||||| ||  ||||||| |||| ||||||    
T  22688960 aaatagtaattttttatgacaacttgtgtatttaatgcattaaaaattgaattgattgacttttttaaagaataaattcttaatttagaatgtttaaaa 22689058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 38362319 - 38362253
Alignment:
Q  241 aatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaaaa 307  Q
    ||||||||||||||||||   |||||  ||||||  |||||||| ||||||||||||||||||||||    
T  38362319 aatacattgaaaattgaaaactttaatatttttaatgaataattatctaatttaaaatgcttaaaaa 38362253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 305
Target Start/End: Original strand, 41431099 - 41431197
Alignment:
Q  208 aaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaactttttt-agagaataattttctaatttaaaatgcttaaa 305  Q
    ||||||||| ||||||||||||| |  ||| | ||||||||  |||||||| ||||||| |||||| | | ||||||||  ||||||||||||||||||    
T  41431099 aaatggtaagtttttatgaaaatatgagtaatcaatacattagaaattgaaatatttaatttttttaaaaaaataatttcttaatttaaaatgcttaaa 41431197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 305
Target Start/End: Complemental strand, 3683527 - 3683424
Alignment:
Q  200 aaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatg 299  Q
    |||||||||||| |||| |||||||||||| ||||||||| ||| || || |||||||||||||| |  |||| | |||||| ||| ||||||||  |||    
T  3683527 aaggtcttaaatagtaactttttatgaaaagttatgtattcaatgca-tggaaattgaactatttgaaattttca-agaatattttcctaatttattatg 3683430  T
Q  300 cttaaa 305  Q
    ||||||    
T  3683429 cttaaa 3683424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 305
Target Start/End: Original strand, 33887842 - 33887958
Alignment:
Q  188 agacactctttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttc 287  Q
    ||||||||||||||| || |||   |||| | |||||||||||  ||||| | ||| |||||||||||||| ||||| ||||||||| ||||||||| |     
T  33887842 agacactctttaaagatcataagaagtaagtatttatgaaaata-atgtaatcaatgcattgaaaattgaaatatttgacttttttaaagaataattatt 33887940  T
Q  288 taatttaaaatgcttaaa 305  Q
    || |||  ||||||||||    
T  33887941 tattttggaatgcttaaa 33887958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 191 - 260
Target Start/End: Original strand, 40998374 - 40998443
Alignment:
Q  191 cactctttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaact 260  Q
    ||||||||||  ||||  ||| |||| ||||||||||||||| ||||||||||||||| |||||| ||||    
T  40998374 cactctttaagagtctagaatagtaactttttatgaaaatttgtgtatttaatacattaaaaattaaact 40998443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 285
Target Start/End: Original strand, 37129834 - 37129898
Alignment:
Q  221 ttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattt 285  Q
    |||||||||| |||||| |||||   ||| |||||||| ||||||||||||||| ||||||||||    
T  37129834 ttatgaaaatgtatgtaattaatgtcttgtaaattgaaatatttaacttttttaaagaataattt 37129898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 282
Target Start/End: Complemental strand, 40722458 - 40722382
Alignment:
Q  206 ttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataa 282  Q
    |||||| |||| ||||||||  ||||| |||| ||||| |||||||||||||| ||||| ||||| ||| |||||||    
T  40722458 ttaaatagtaagtttttatggtaatttgtgtaattaatgcattgaaaattgaaatatttgactttcttaaagaataa 40722382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 189 - 272
Target Start/End: Original strand, 20397459 - 20397542
Alignment:
Q  189 gacactctttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttt 272  Q
    |||||||||||| | | | |||| ||||| |||||||||||| | || ||| ||| |||||||||||||| | |||||||||||    
T  20397459 gacactctttaaggatttaaaatagtaatattttatgaaaatgtgtgcattcaatgcattgaaaattgaaatgtttaacttttt 20397542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 305
Target Start/End: Complemental strand, 36778789 - 36778703
Alignment:
Q  219 ttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaa 305  Q
    |||||| ||| ||| |||||||| || |||||||||||||   ||||| ||||||| | ||||||||| | ||| ||||||||||||    
T  36778789 ttttataaaagtttttgtatttattaaattgaaaattgaaaattttaatttttttaaataataatttttttattaaaaatgcttaaa 36778703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 285
Target Start/End: Complemental strand, 41939567 - 41939493
Alignment:
Q  211 tggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattt 285  Q
    |||||| ||||||| ||||||||||| |||| | ||||||||||| || | ||||| || |||| ||||||||||    
T  41939567 tggtaaatttttataaaaatttatgtttttattgcattgaaaattaaaatctttaatttgtttaaagaataattt 41939493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 336
Target Start/End: Complemental strand, 44592937 - 44592835
Alignment:
Q  234 tgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaaaaatgctccagtaacattcgttaacaag 333  Q
    |||||| |||||||||||||||| | || |||||||||| | ||||||||| |  |||||  |||  ||||| | || ||||| |||| |||||||||||    
T  44592937 tgtattgaatacattgaaaattgtaatagttaactttttaaaagaataattattaaattttgaatatttaaagagtgttccagaaacactcgttaacaag 44592838  T
Q  334 atc 336  Q
    |||    
T  44592837 atc 44592835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 305
Target Start/End: Complemental strand, 25886287 - 25886170
Alignment:
Q  189 gacactctttaaaggtcttaaatggtaattttt-tatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttc 287  Q
    |||||||||||||    ||||||||||| |||| |||||||| || |||||| |||  ||||||||||| | || || ||||| | ||||||||||||      
T  25886287 gacactctttaaacactttaaatggtaagttttatatgaaaagttgtgtattaaatgtattgaaaattgtaatagttgactttctaagagaataatttct 25886188  T
Q  288 taatttaaaatgcttaaa 305  Q
     ||||||||||| |||||    
T  25886187 aaatttaaaatgtttaaa 25886170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 256
Target Start/End: Original strand, 9718967 - 9719051
Alignment:
Q  173 ttaacgagtgtctcgagacactctttaaaggtcttaaatggtaattttt-tatgaaaatttatgtatttaatacattgaaaattg 256  Q
    ||||||||||||   |||||||||||||     ||||||||||| |||| |||||||| ||||||| | ||||||||||||||||    
T  9718967 ttaacgagtgtcctcagacactctttaagcactttaaatggtaagttttatatgaaaagttatgtaatgaatacattgaaaattg 9719051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 204 - 337
Target Start/End: Complemental strand, 48098053 - 48097920
Alignment:
Q  204 tcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgctta 303  Q
    |||||||| |||| ||||||| ||||  | ||||||||||  |||| |||||||||||||||||||||||| ||||||||||  ||||||| ||| ||||    
T  48098053 tcttaaatagtaactttttataaaaacatgtgtatttaatgtattggaaattgaactatttaacttttttaaagaataatttcttaatttagaatactta 48097954  T
Q  304 aaaaatgctccagtaacattcgttaacaagatcc 337  Q
    |||| |||||| |  ||| |||||||||||||||    
T  48097953 aaaagtgctccggagacactcgttaacaagatcc 48097920  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 213 - 305
Target Start/End: Original strand, 24546722 - 24546814
Alignment:
Q  213 gtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaa 305  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||  || | ||||||| |||||||||| ||||||||| |||||||||    
T  24546722 gtaattttttatgaaaatttgtgtatttaatacattggaaattgaactgcttgaattttttaaagaataatttcctaatttaacatgcttaaa 24546814  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 190 - 307
Target Start/End: Original strand, 19597141 - 19597258
Alignment:
Q  190 acactctttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttcta 289  Q
    ||||||||||| ||||||||||  |||  |||||| |||||||||||||| ||| ||||  |||||||||||||| || |||||| |||||||||| |||    
T  19597141 acactctttaagggtcttaaataataacattttataaaaatttatgtattcaatgcattagaaattgaactatttgacatttttaaagaataatttccta 19597240  T
Q  290 atttaaaatgcttaaaaa 307  Q
    || || ||||||||||||    
T  19597241 atgtagaatgcttaaaaa 19597258  T

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Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 213 - 305
Target Start/End: Complemental strand, 2063567 - 2063475
Alignment:
Q  213 gtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaa 305  Q
    |||| ||||||||||||||| |||||||||||||||| |||||||||| ||| ||||||||| ||||||| || ||||||||  |||||||||    
T  2063567 gtaactttttatgaaaatttgtgtatttaatacattggaaattgaactgtttgacttttttaaagaataacttcctaatttagcatgcttaaa 2063475  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 309
Target Start/End: Original strand, 12912863 - 12912954
Alignment:
Q  218 tttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaaaaat 309  Q
    ||||||| ||||||| |||||||||| | ||  |||||||| ||||| |||||||||   ||| |||| |||||||||||||||||||||||    
T  12912863 tttttataaaaatttgtgtatttaatgctttagaaattgaattatttgacttttttaataaatgatttcctaatttaaaatgcttaaaaaat 12912954  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 213 - 334
Target Start/End: Original strand, 41370182 - 41370303
Alignment:
Q  213 gtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaactttttt-agagaataattttctaatttaaaatgcttaaaaaatgc 311  Q
    |||| ||||||||||||||| |||| | ||| |||||||||||||| |||||||||||||| ||| ||||||||  ||||||  | |||||||  | |||    
T  41370182 gtaagtttttatgaaaatttgtgtaatcaatgcattgaaaattgaaatatttaacttttttgaga-aataatttcttaatttggattgcttaatgagtgc 41370280  T
Q  312 tccagtaacattcgttaacaaga 334  Q
    ||| | |||| ||||||||||||    
T  41370281 tccggaaacactcgttaacaaga 41370303  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 173 - 303
Target Start/End: Original strand, 49532225 - 49532354
Alignment:
Q  173 ttaacgagtgtctcgagacactctttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttt 272  Q
    ||||||| |||| ||||||||||||||| || ||||||| |||| |||| || ||||  | |||||||||| ||||| |||||||| ||||| | ||||     
T  49532225 ttaacgaatgtcccgagacactctttaagggccttaaatagtaacttttaataaaaacatgtgtatttaatgcattggaaattgaattatttga-tttta 49532323  T
Q  273 tagagaataattttctaatttaaaatgctta 303  Q
    || ||||||||||  ||||||  ||||||||    
T  49532324 taaagaataatttcttaatttggaatgctta 49532354  T

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Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 214 - 292
Target Start/End: Complemental strand, 52014662 - 52014584
Alignment:
Q  214 taattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatt 292  Q
    ||||||||||||||||||| ||||| |||| ||||| |||||| | ||||| |||||||||  ||||||||| ||||||    
T  52014662 taattttttatgaaaatttgtgtatctaatgcattggaaattggattatttgacttttttaatgaataatttcctaatt 52014584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 206 - 290
Target Start/End: Complemental strand, 3482742 - 3482658
Alignment:
Q  206 ttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaa 290  Q
    ||||||| ||| |||||||||| || ||||||||| || ||||||| |||||| ||| ||||||||||  | |||||||||||||    
T  3482742 ttaaatgataactttttatgaacatctatgtatttgatgcattgaatattgaagtatataactttttttaaaaataattttctaa 3482658  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 303
Target Start/End: Complemental strand, 20262198 - 20262104
Alignment:
Q  210 atggtaattttttatgaaaa-tttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgctta 303  Q
    ||||||| |||||||||||| ||| | || || ||  ||| ||||||||| ||||||||||||||| | ||||||||| ||||||||||| ||||    
T  20262198 atggtaagtttttatgaaaaatttgtataattgatgaattaaaaattgaaatatttaacttttttaaaaaataattttttaatttaaaattctta 20262104  T

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Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 274
Target Start/End: Original strand, 44690284 - 44690338
Alignment:
Q  220 tttatgaaaatttatgtatttaatacattgaaaattgaactatttaactttttta 274  Q
    ||||||||||| |||||| ||| |||||||||||| ||| |||||||||||||||    
T  44690284 tttatgaaaatatatgtaattattacattgaaaatcgaaatatttaactttttta 44690338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 274
Target Start/End: Complemental strand, 3341646 - 3341557
Alignment:
Q  186 cgagacactctttaaaggtcttaaatggtaattttttatg-aaaatttatgtatttaatacattgaaaattgaactatttaactttttta 274  Q
    ||||| ||||||||| |||||| |||  ||||||||| |  |||| ||||| ||||||| ||| ||||| ||||||||||||||||||||    
T  3341646 cgagatactctttaagggtctttaatattaattttttttttaaaaattatgcatttaatgcatcgaaaactgaactatttaactttttta 3341557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 310
Target Start/End: Complemental strand, 4395040 - 4394903
Alignment:
Q  173 ttaacgagtgtctcgagacactctttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttt 272  Q
    ||||||| |||||| ||||||| ||||||| || || || |||  ||||||| |||||   |||||| |||  ||| |||||| || ||||| | |||||    
T  4395040 ttaacgaatgtctctagacactatttaaagatcctatattgtacgtttttataaaaatacgtgtattcaatgtattaaaaattaaaatatttgatttttt 4394941  T
Q  273 tagagaataattttctaatttaaaatgcttaaaaaatg 310  Q
    || |||||||||   |||||||||||| ||||||||||    
T  4394940 taaagaataattacttaatttaaaatgtttaaaaaatg 4394903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 305
Target Start/End: Original strand, 50343857 - 50343942
Alignment:
Q  220 tttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaa 305  Q
    |||||||||||  || || | ||||||||||||||| || ||||| ||||||||| |||||||||   || |||||||||||||||    
T  50343857 tttatgaaaatacatataatcaatacattgaaaattaaaatatttgacttttttaaagaataattacttattttaaaatgcttaaa 50343942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 310
Target Start/End: Complemental strand, 9044305 - 9044229
Alignment:
Q  234 tgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaaaaatg 310  Q
    |||||| ||| | ||| |||||||||||||| |||||| ||   |||||||||||||||||||||| ||||| ||||    
T  9044305 tgtattcaatgctttgcaaattgaactatttgacttttctaataaataattttctaatttaaaatgtttaaagaatg 9044229  T

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Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 293
Target Start/End: Original strand, 21074478 - 21074554
Alignment:
Q  217 ttttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaattt 293  Q
    |||||||| |||| || |||||| | |||||||||||||||| ||||| |||||||||   ||||||||| ||||||    
T  21074478 ttttttataaaaaattgtgtattcagtacattgaaaattgaaatatttgacttttttaacaaataattttataattt 21074554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 309
Target Start/End: Original strand, 40444402 - 40444537
Alignment:
Q  174 taacgagtgtctcgagacactctttaaaggtcttaaatggtaa-ttttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttt 272  Q
    |||| ||||||||  |||| |||||||   ||| ||||||||| ||||||||  |||||| ||||||||||  ||||||||||| | ||||||||  |||    
T  40444402 taacaagtgtctctcgacattctttaagactctaaaatggtaaattttttatagaaatttgtgtatttaatgtattgaaaattggagtatttaac-attt 40444500  T
Q  273 tagagaataattttctaatttaaaatgcttaaaaaat 309  Q
    ||   ||||||||| ||||||| ||| ||||||||||    
T  40444501 tattaaataattttttaatttagaatccttaaaaaat 40444537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 312
Target Start/End: Complemental strand, 45743423 - 45743308
Alignment:
Q  197 ttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaa 296  Q
    |||| |||||||||| |||| | |||||||||| || |||| | | |  |||||||||||||   ||| || |||||| ||||||||||  ||||||||     
T  45743423 ttaagggtcttaaatagtaactctttatgaaaagttgtgtaatcactgtattgaaaattgaaaactttgacatttttaaagaataatttcttaatttaac 45743324  T
Q  297 atgcttaaaaaatgct 312  Q
    || |||||||||||||    
T  45743323 atacttaaaaaatgct 45743308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 205 - 272
Target Start/End: Complemental strand, 50248017 - 50247950
Alignment:
Q  205 cttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttt 272  Q
    ||||||| |||| |||||||  ||||| ||| ||| ||| ||||||||||| ||||||||||||||||    
T  50248017 cttaaatagtaagtttttatagaaattaatgaattcaatgcattgaaaatttaactatttaacttttt 50247950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 305
Target Start/End: Complemental strand, 32284968 - 32284882
Alignment:
Q  219 ttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaa 305  Q
    |||||||||||||||| ||||| || ||||  ||||| || |||||||| ||||||  |||||||||  |||| |||||| ||||||    
T  32284968 ttttatgaaaatttatctatttgatgcattagaaattaaagtatttaacatttttaatgaataatttcttaatgtaaaattcttaaa 32284882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 312
Target Start/End: Original strand, 53392438 - 53392504
Alignment:
Q  246 attgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaaaaatgct 312  Q
    ||||||||||||| | ||| | |||||||| ||||| ||| |||||||||||| |||||| ||||||    
T  53392438 attgaaaattgaagtgtttgaattttttagtgaatagtttcctaatttaaaatccttaaagaatgct 53392504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 305
Target Start/End: Complemental strand, 2818424 - 2818359
Alignment:
Q  240 taatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaa 305  Q
    |||| ||||| |||||||||| ||| || |||| | ||||||||||  ||||||||||||||||||    
T  2818424 taatgcattggaaattgaactttttgaccttttaaaagaataatttcttaatttaaaatgcttaaa 2818359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 285
Target Start/End: Original strand, 20580083 - 20580160
Alignment:
Q  208 aaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattt 285  Q
    |||| ||||| |||||||||| |||||||||||| || |||| |||||||| | ||||  ||||||| | ||||||||    
T  20580083 aaatagtaatattttatgaaagtttatgtatttattatattggaaattgaagtctttactttttttaaataataattt 20580160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 338
Target Start/End: Original strand, 47461056 - 47461181
Alignment:
Q  213 gtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaaaaatgct 312  Q
    |||| ||||||||||||| ||| || | |||||||||||| ||  | ||||||| ||||||  | |||| ||||  ||||| | || |||||||| || |    
T  47461056 gtaagtttttatgaaaatatatataatcaatacattgaaatttataatatttaattttttttaataatattttttaaatttgagatccttaaaaagtgtt 47461155  T
Q  313 ccagtaacattcgttaacaagatccg 338  Q
    ||| | ||| ||||||||||||||||    
T  47461156 ccaatgacactcgttaacaagatccg 47461181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 311
Target Start/End: Original strand, 48818608 - 48818688
Alignment:
Q  230 tttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaaaaatgc 311  Q
    |||||||||||||| |||||||||||  | ||||||||||||||| | ||||||||| | || ||||||  ||||| |||||    
T  48818608 tttatgtatttaatgcattgaaaattatagtatttaactttttta-aaaataattttttgatataaaatatttaaagaatgc 48818688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 5839614 - 5839558
Alignment:
Q  218 tttttatgaaaatttatgtatttaatacattgaaaattgaactatttaactttttta 274  Q
    ||||||||||||||| ||||||||||  ||||||| |||||  |||||| |||||||    
T  5839614 tttttatgaaaatttgtgtatttaatgtattgaaatttgaaacatttaaatttttta 5839558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 256
Target Start/End: Original strand, 13585234 - 13585318
Alignment:
Q  173 ttaacgagtgtctcgagacactctttaaaggtcttaaatggtaattttt-tatgaaaatttatgtatttaatacattgaaaattg 256  Q
    ||||||||||||   |||||||||||||     ||||||||||| |||| |||||||| ||||||| | ||||||||||||||||    
T  13585234 ttaacgagtgtcctcagacactctttaagcactttaaatggtaagttttatatgaaaagttatgtaatgaatacattgaaaattg 13585318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 268
Target Start/End: Original strand, 14794177 - 14794209
Alignment:
Q  236 tatttaatacattgaaaattgaactatttaact 268  Q
    ||||||||||||||||||||||| |||||||||    
T  14794177 tatttaatacattgaaaattgaagtatttaact 14794209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 23367664 - 23367720
Alignment:
Q  173 ttaacgagtgtctcgagacactctttaaaggtcttaaatggtaattttttatgaaaa 229  Q
    ||||||||||| ||| || ||||||||| |||| ||||  |||||||||||||||||    
T  23367664 ttaacgagtgtttcgggatactctttaagggtcataaacagtaattttttatgaaaa 23367720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 24396231 - 24396191
Alignment:
Q  267 cttttttagagaataattttctaatttaaaatgcttaaaaa 307  Q
    |||||| | |||||||||||| |||||||||||||||||||    
T  24396231 ctttttaaaagaataattttcaaatttaaaatgcttaaaaa 24396191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 310
Target Start/End: Original strand, 25751708 - 25751812
Alignment:
Q  206 ttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaa 305  Q
    |||||| |||| ||||||| |||  ||||| | ||||| ||||||||||| || | ||| ||||||||| ||||||||||  | |||  |||| ||||||    
T  25751708 ttaaatagtaagtttttattaaagcttatgcaattaatgcattgaaaattaaattttttgacttttttaaagaataatttctttattagaaatccttaaa 25751807  T
Q  306 aaatg 310  Q
    |||||    
T  25751808 aaatg 25751812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 337
Target Start/End: Complemental strand, 41462137 - 41462017
Alignment:
Q  217 ttttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaaaaatgctccag 316  Q
    ||||| ||||||| ||||||||| ||| |||   |||||| | || || ||||||| | |||||||||    ||| ||||||||||||| | ||||||||    
T  41462137 tttttaatgaaaaattatgtattaaatgcataagaaattgtaatagttgactttttaaaagaataattactaaatataaaatgcttaaagagtgctccag 41462038  T
Q  317 taacattcgttaacaagatcc 337  Q
      ||| |||||||||||||||    
T  41462037 ggacactcgttaacaagatcc 41462017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 305
Target Start/End: Original strand, 47995755 - 47995843
Alignment:
Q  217 ttttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaa 305  Q
    ||||| ||||||| ||||||||| ||| |||||||||||| | || |||||||||| | ||| |||||    |||||| ||||||||||    
T  47995755 tttttaatgaaaagttatgtattgaatgcattgaaaattgtaataattaactttttaaaagagtaattactaaatttagaatgcttaaa 47995843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 173 - 285
Target Start/End: Original strand, 34597211 - 34597322
Alignment:
Q  173 ttaacgagtgtctcgagacactctttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttt 272  Q
    ||||||||||| ||| |||||| ||||||||| ||||||| ||| ||||||||||||||||||||| ||||| |||||||||| || ||||| ||||| |    
T  34597211 ttaacgagtgt-tcgtgacactttttaaaggttttaaatgataaatttttatgaaaatttatgtatgtaatatattgaaaattaaaatattttactttat 34597309  T
Q  273 tagagaataattt 285  Q
    || ||| ||||||    
T  34597310 taaagactaattt 34597322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 191 - 293
Target Start/End: Original strand, 25028690 - 25028792
Alignment:
Q  191 cactctttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaa 290  Q
    ||||||||||  |||||||||  ||| ||||||| ||||  | |||||| ||| |||||||||||||||| ||| ||||||||| |||||||||||||||    
T  25028690 cactctttaagagtcttaaattttaactttttataaaaacgtgtgtattcaatgcattgaaaattgaactgtttgacttttttaaagaataattttctaa 25028789  T
Q  291 ttt 293  Q
    |||    
T  25028790 ttt 25028792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 192 - 305
Target Start/End: Original strand, 6586410 - 6586523
Alignment:
Q  192 actctttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaat 291  Q
    |||| |||| |||||||||| |||| ||||||||||||||||||| || ||| ||| | |||||||||||| | ||||||| | ||| |||||| |||||    
T  6586410 actcgttaagggtcttaaatagtaactttttatgaaaatttatgttttcaatgcatcggaaattgaactatctgactttttcaaagattaatttcctaat 6586509  T
Q  292 ttaaaatgcttaaa 305  Q
    |||  |||||||||    
T  6586510 ttagtatgcttaaa 6586523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 196 - 272
Target Start/End: Original strand, 2157189 - 2157265
Alignment:
Q  196 tttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttt 272  Q
    ||||| ||| ||||||||||| |||| |||||||| | |||| ||||| |||| |||||||||||||||||||||||    
T  2157189 tttaagggttttaaatggtaaattttaatgaaaatatgtgtaattaatgcattaaaaattgaactatttaacttttt 2157265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 302
Target Start/End: Complemental strand, 12132641 - 12132530
Alignment:
Q  191 cactctttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaa 290  Q
    |||||||||||   ||| || ||||| ||| ||||||||||| |||||| ||| |||||||||||||| ||||| || |||||| |||||| |||  |||    
T  12132641 cactctttaaacacctttaaaggtaagtttctatgaaaatttgtgtattaaatgcattgaaaattgaattatttgacgtttttaaagaatattttcataa 12132542  T
Q  291 tttaaaatgctt 302  Q
    | || |||||||    
T  12132541 tatagaatgctt 12132530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 286
Target Start/End: Original strand, 12735500 - 12735568
Alignment:
Q  218 tttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataatttt 286  Q
    ||||||||||||||| ||||||||||  || |||||||||| || |||| |||||||  ||||||||||    
T  12735500 tttttatgaaaatttgtgtatttaatgtatcgaaaattgaattaattaagttttttaatgaataatttt 12735568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 31759862 - 31759826
Alignment:
Q  237 atttaatacattgaaaattgaactatttaactttttt 273  Q
    ||||||| |||||||||||||||||||||||||||||    
T  31759862 atttaatgcattgaaaattgaactatttaactttttt 31759826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 220 - 310
Target Start/End: Original strand, 10544618 - 10544705
Alignment:
Q  220 tttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaaaaatg 310  Q
    |||||||||||  ||||||||||||||||| ||||  || ||||||||  ||||| | ||||||| | |||||||||||||||||| ||||    
T  10544618 tttatgaaaatgcatgtatttaatacattg-aaatcaaaatatttaac--ttttaaaaaataattgtttaatttaaaatgcttaaagaatg 10544705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 286
Target Start/End: Original strand, 10346023 - 10346081
Alignment:
Q  228 aatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataatttt 286  Q
    |||||||||| | ||| |||||||||||||| | ||||||||||||| | |||||||||    
T  10346023 aatttatgtaatcaatgcattgaaaattgaagtttttaacttttttaaaaaataatttt 10346081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 294
Target Start/End: Complemental strand, 32915063 - 32914973
Alignment:
Q  204 tcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaattta 294  Q
    ||||||||| ||| ||||||| ||||  | ||||| || || ||| |||||| || ||||||| ||||||| ||||||||||| |||||||    
T  32915063 tcttaaatgataactttttataaaaacatgtgtatctattaaattaaaaattaaattatttaatttttttaaagaataattttttaattta 32914973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 256
Target Start/End: Complemental strand, 2864997 - 2864925
Alignment:
Q  186 cgagacactctttaaaggtcttaaatggtaa--ttttttatgaaaatttatgtatttaatacattgaaaattg 256  Q
    ||||||||||||||||  | |||||||||||  ||||| ||||||| || |||||||||| ||||| ||||||    
T  2864997 cgagacactctttaaacattttaaatggtaagttttttgatgaaaaattgtgtatttaatgcattgtaaattg 2864925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 5704577 - 5704618
Alignment:
Q  217 ttttttatgaaaatttatgtatttaatacattgaaaattgaa 258  Q
    |||||||||||| |||||||| | ||||||||||||||||||    
T  5704577 ttttttatgaaagtttatgtaatcaatacattgaaaattgaa 5704618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 285
Target Start/End: Original strand, 5678485 - 5678557
Alignment:
Q  213 gtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattt 285  Q
    |||| |||||||  |||||||| |||| |||  ||||||||||||| |||| ||||||||||  |||||||||    
T  5678485 gtaaatttttatagaaatttatatattcaatgtattgaaaattgaagtattaaacttttttaatgaataattt 5678557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 298
Target Start/End: Original strand, 12226646 - 12226754
Alignment:
Q  191 cactctttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattg-aactatttaacttttttagagaataattttcta 289  Q
    |||| ||||||| | |||||| ||||| |||||||||| ||| || | ||| |  ||||||||||| || |||||||| |||| | ||||||||||| ||    
T  12226646 cactttttaaagattttaaatagtaatgttttatgaaattttgtgaaattagtgtattgaaaattgaaaatatttaacattttaaaagaataatttttta 12226745  T
Q  290 atttaaaat 298  Q
     ||||||||    
T  12226746 ttttaaaat 12226754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 284
Target Start/End: Complemental strand, 34921652 - 34921588
Alignment:
Q  220 tttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataatt 284  Q
    ||||||||||| | |||||| | | |||| |||||| || ||||||||||||||| |||||||||    
T  34921652 tttatgaaaatgtgtgtattaattgcattaaaaattaaaatatttaacttttttaaagaataatt 34921588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 173 - 305
Target Start/End: Original strand, 24040997 - 24041129
Alignment:
Q  173 ttaacgagtgtctcgagacactctttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttt 272  Q
    |||||||||||||    ||||| ||||| |||||||||| |||| |||||||||||| |||||||||||||  |||| ||||| |||||||| | |||||    
T  24040997 ttaacgagtgtctttgaacactttttaagggtcttaaatagtaactttttatgaaaagttatgtatttaatgtattggaaattaaactatttgaattttt 24041096  T
Q  273 tagagaataattttctaatttaaaatgcttaaa 305  Q
    || ||||||||||  |||||| | |||||||||    
T  24041097 taaagaataatttcataatttgatatgcttaaa 24041129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 217 - 330
Target Start/End: Complemental strand, 16161507 - 16161394
Alignment:
Q  217 ttttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaaaaatgctccag 316  Q
    |||||||| ||||| | |||||||||| |||||||||||||| ||||||||||||||  | |||||||| |||||||  |||||||||| | ||| || |    
T  16161507 ttttttataaaaatatgtgtatttaatccattgaaaattgaattatttaactttttttaaaaataatttcctaatttggaatgcttaaagagtgccccgg 16161408  T
Q  317 taacattcgttaac 330  Q
     |||| ||||||||    
T  16161407 aaacactcgttaac 16161394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 224 - 285
Target Start/End: Complemental strand, 8762008 - 8761947
Alignment:
Q  224 tgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattt 285  Q
    |||||||||||||  | |||||||||||||||||| ||||||||||||||| ||||||||||    
T  8762008 tgaaaatttatgtcatcaatacattgaaaattgaaatatttaacttttttatagaataattt 8761947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 286
Target Start/End: Original strand, 26407532 - 26407599
Alignment:
Q  219 ttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataatttt 286  Q
    |||||||||||||||| || ||||| |||||||||||||| ||||||| ||| ||| |||||||||||    
T  26407532 ttttatgaaaatttatataattaattcattgaaaattgaaatatttaattttattaaagaataatttt 26407599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 334
Target Start/End: Complemental strand, 8208267 - 8208150
Alignment:
Q  217 ttttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaaaaatgctccag 316  Q
    |||| |||||||| ||||||| | ||| |||| ||||||| | || || ||||||| | |||||||||||| ||||||||||||||||| | |||||       
T  8208267 ttttatatgaaaagttatgtaatgaatgcattaaaaattgtaataattgactttttaaaagaataattttcaaatttaaaatgcttaaagagtgctctga 8208168  T
Q  317 taacattcgttaacaaga 334  Q
     |||| ||||||||||||    
T  8208167 aaacactcgttaacaaga 8208150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 305
Target Start/End: Complemental strand, 10359159 - 10359090
Alignment:
Q  236 tatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaa 305  Q
    |||| ||| ||||||||||| |||||||||| |||| || | |||||||||||||||||||||| |||||    
T  10359159 tattcaatgcattgaaaattaaactatttaagttttataaaaaataattttctaatttaaaatgtttaaa 10359090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 305
Target Start/End: Original strand, 25437888 - 25437981
Alignment:
Q  213 gtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaac-ttttttagagaataattttctaatttaaaatgcttaaa 305  Q
    |||| |||||||||||| || |||||||||||||||| |||||||||| ||| || ||||||| ||||||| ||  |||||||  |||||||||    
T  25437888 gtaactttttatgaaaacttgtgtatttaatacattggaaattgaactgtttcactttttttaaagaataacttcttaatttagcatgcttaaa 25437981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 274
Target Start/End: Original strand, 31759010 - 31759071
Alignment:
Q  213 gtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaactttttta 274  Q
    ||||||| ||| |||| ||||||||||||||||||||||||||||| ||||| | |||||||    
T  31759010 gtaatttgttaagaaagtttatgtatttaatacattgaaaattgaagtatttgattttttta 31759071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 213 - 293
Target Start/End: Complemental strand, 967194 - 967114
Alignment:
Q  213 gtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaattt 293  Q
    |||| |||| ||||||||| ||||||| ||| ||||| |||||||||||||| | ||||||| |||||||| | |||||||    
T  967194 gtaacttttcatgaaaattcatgtattcaatgcattggaaattgaactatttgaattttttaaagaataatatcctaattt 967114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 304
Target Start/End: Complemental strand, 12448791 - 12448672
Alignment:
Q  186 cgagacactctttaaaggtcttaaatggtaattt-tttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataatt 284  Q
    |||||||||||||| ||   |||||||| ||||| ||||| ||| ||| |||| | | | |||||||||||||| |||||||||||||||  ||||||||    
T  12448791 cgagacactctttatagcctttaaatggaaatttgtttataaaagtttgtgtaatcattgcattgaaaattgaaatatttaacttttttattgaataatt 12448692  T
Q  285 ttctaatttaaaatgcttaa 304  Q
    |  || |||||||| |||||    
T  12448691 tcttattttaaaatccttaa 12448672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 273
Target Start/End: Complemental strand, 42877358 - 42877276
Alignment:
Q  191 cactctttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaactttttt 273  Q
    ||||||||||||   |||||| |||| |||||||| ||| || |||||| |||||||||||||||||| | || |||||||||    
T  42877358 cactctttaaagactttaaatagtaaatttttatggaaaattgtgtattcaatacattgaaaattgaaattttaaactttttt 42877276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 306
Target Start/End: Complemental strand, 22873542 - 22873470
Alignment:
Q  234 tgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaaa 306  Q
    |||||| ||| |||| |||||| || ||||||||||||||| ||||||||| | || |||||||| |||||||    
T  22873542 tgtattcaatgcattaaaaattaaaatatttaacttttttaaagaataattctttattttaaaatacttaaaa 22873470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 307
Target Start/End: Complemental strand, 14157836 - 14157725
Alignment:
Q  196 tttaaaggtcttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaa 295  Q
    |||||| |||||||||| |||   ||||||||||| ||| || |||||   |||||||||||| ||||||| |||||||   ||||| ||| |||||||     
T  14157836 tttaaaagtcttaaatgttaaaactttatgaaaatatatataattaatgttttgaaaattgaaatatttaatttttttaataaataaatttttaatttat 14157737  T
Q  296 aatgcttaaaaa 307  Q
    ||||||| ||||    
T  14157736 aatgcttgaaaa 14157725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 284
Target Start/End: Original strand, 20125661 - 20125739
Alignment:
Q  206 ttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataatt 284  Q
    |||||| |||| |||||||||||| || || ||||| | ||| |||||||||| | || |||||||||| |||||||||    
T  20125661 ttaaatagtaaatttttatgaaaaattgtgcatttagtgcatcgaaaattgaagtgttaaacttttttaaagaataatt 20125739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 308
Target Start/End: Original strand, 33639759 - 33639849
Alignment:
Q  218 tttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaaaaa 308  Q
    |||||||||||||||  ||||||||||||||| ||||| || ||||| | | ||||| |  |||||||  |||||| |||| |||||||||    
T  33639759 tttttatgaaaatttgcgtatttaatacattgtaaattaaaatatttgattattttaaaatataatttattaatttgaaattcttaaaaaa 33639849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 334
Target Start/End: Original strand, 4878586 - 4878683
Alignment:
Q  237 atttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaaaaatgctccagtaacattcgttaacaaga 334  Q
    ||||| || ||||||||||||| | ||||| ||||||| ||||||||||| | ||| |||||  |||||||||  |||   |||| ||||||||||||    
T  4878586 atttattatattgaaaattgaagtctttaatttttttaaagaataatttttttattaaaaatatttaaaaaatattccgaaaacactcgttaacaaga 4878683  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 4434654 - 4434706
Alignment:
Q  220 tttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttt 272  Q
    ||||| ||||| | ||||||||||  ||||||||||||| |||||||||||||    
T  4434654 tttataaaaatatgtgtatttaatgtattgaaaattgaagtatttaacttttt 4434706  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 272
Target Start/End: Original strand, 20721264 - 20721328
Alignment:
Q  208 aaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttt 272  Q
    |||| ||||| ||||||| |||| | || ||| |||||||||||||||||| | |||||||||||    
T  20721264 aaatagtaatattttatggaaatatgtgcattcaatacattgaaaattgaaatgtttaacttttt 20721328  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 294
Target Start/End: Complemental strand, 33590125 - 33590065
Alignment:
Q  234 tgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaattta 294  Q
    ||||||||||  |||| |||||||||||||||| ||||| | ||||||||||  |||||||    
T  33590125 tgtatttaatgtattggaaattgaactatttaattttttaaaagaataatttattaattta 33590065  T

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Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 36486971 - 36486911
Alignment:
Q  245 cattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaa 305  Q
    |||||||||||||| | || |||||||||| ||||||||||  | ||| ||||||||||||    
T  36486971 cattgaaaattgaagtcttgaacttttttaaagaataatttctttattaaaaatgcttaaa 36486911  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 38594938 - 38594990
Alignment:
Q  206 ttaaatggtaattttttatgaaaatttatgtatttaatacattgaaaattgaa 258  Q
    ||||||| ||| ||||||||||||||||| || ||||| ||||| ||||||||    
T  38594938 ttaaatgataaatttttatgaaaatttatataattaatgcattggaaattgaa 38594990  T

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Target: scaffold0121 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 334
Target Start/End: Original strand, 28800 - 28910
Alignment:
Q  224 tgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaaaaatgctccagtaacatt 323  Q
    |||||||| ||||||| ||| ||||||||||| || ||||||| |||||||  |||||||||  |  ||||||||| ||||| | | ||| || |||| |    
T  28800 tgaaaattgatgtattcaatgcattgaaaattaaaatatttaatttttttatggaataatttcttcttttaaaatgtttaaagagtactctaggaacact 28899  T
Q  324 cgttaacaaga 334  Q
    |||||||||||    
T  28900 cgttaacaaga 28910  T

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Target: scaffold0009 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 305
Target Start/End: Complemental strand, 189154 - 189069
Alignment:
Q  220 tttatgaaaatttatgtatttaatacattgaaaattgaactatttaacttttttagagaataattttctaatttaaaatgcttaaa 305  Q
    ||||||||||| | |||| |||||  |||  |||| ||| ||||||||||||||| |||||||||   || |||||||||||||||    
T  189154 tttatgaaaatatgtgtaattaatgtattagaaatagaaatatttaacttttttaaagaataattgcttattttaaaatgcttaaa 189069  T

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Target: scaffold0005 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 268
Target Start/End: Complemental strand, 45554 - 45522
Alignment:
Q  236 tatttaatacattgaaaattgaactatttaact 268  Q
    ||||||||||||||||||||||| |||||||||    
T  45554 tatttaatacattgaaaattgaagtatttaact 45522  T

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