View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13180_high_6 (Length: 362)

Name: NF13180_high_6
Description: NF13180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13180_high_6
NF13180_high_6
[»] chr7 (22 HSPs)
chr7 (1-344)||(22805844-22806188)
chr7 (1-343)||(22842705-22843051)
chr7 (8-344)||(22840600-22840933)
chr7 (23-334)||(22886060-22886368)
chr7 (4-227)||(22841175-22841393)
chr7 (110-334)||(22810283-22810523)
chr7 (32-226)||(22894523-22894712)
chr7 (1-186)||(22831566-22831745)
chr7 (1-89)||(22858954-22859042)
chr7 (32-122)||(22876488-22876577)
chr7 (1-112)||(22815563-22815679)
chr7 (4-140)||(22873683-22873819)
chr7 (207-334)||(22859105-22859231)
chr7 (234-344)||(22831794-22831903)
chr7 (160-241)||(22873811-22873892)
chr7 (38-102)||(22881124-22881189)
chr7 (284-344)||(22894777-22894837)
chr7 (1-78)||(22810179-22810258)
chr7 (284-344)||(22841468-22841528)
chr7 (191-262)||(22815941-22816011)
chr7 (283-328)||(22816015-22816061)
chr7 (206-243)||(22831748-22831785)
[»] chr1 (2 HSPs)
chr1 (1-241)||(21149959-21150179)
chr1 (268-344)||(21149835-21149910)


Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 22805844 - 22806188
Alignment:
Q  1 atgaataatgcttgtgtagttctgttcggtgtttattatttataagattttgtcctaagtgaagaaaaaattgcaagtctaatttgggtcctagtaagaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22805844 atgaataatgcttgtgtagttctgttcggtgtttattatttataagattttgtcctaagtgaagaaaaaattgcaagtctaatttgggtcctagtaagaa 22805943  T
Q  101 atgtcctggaacataacttagctacgaatcatttctaaaagaaacatcacatgacatggttactaaaattgcctttatcatc--tgagtcatactaagaa 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||    
T  22805944 atgtcctggaacataacttagctacgaatcatttctaaaagaaacatcacatgacatggttactaaaattgcctttatcatctgtgagtcctactaagaa 22806043  T
Q  199 atatctcatttagtttagtaaaaatgaatgtgttacacatttgaaccacaaattttctttccaactgtagtagtgggtaaatgttttttcaatgtttaca 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  22806044 atatctcatttagtttagtaaaaatgaatgtgttacacatttgaaccacaaattttctttccaattgtagtagtgggtaaatg-tttttcaatgtttaca 22806142  T
Q  299 tataaagtgtttgatgctaaattgaatatgtgaaatcaagacatca 344  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||    
T  22806143 tattaagtgtttgatgctaaattgaatatgtgaaatcaagacatca 22806188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 22842705 - 22843051
Alignment:
Q  1 atgaataatgcttgtgtagttctg---ttcggtgtttattatttataagattttgtcctaagtgaagaaaaaattgcaagtctaatttgggtcctagtaa 97  Q
    ||||| ||||||| ||||||||||   |||  |||||||||||||||||||||||| | |||||||||  ||| | | | |||||||||||||||| |||    
T  22842705 atgaacaatgcttctgtagttctgctgttcaatgtttattatttataagattttgtgccaagtgaagatgaaaataccaatctaatttgggtcctactaa 22842804  T
Q  98 gaaatgtcctggaacataacttagctacgaatcatttctaaaagaaacatcacatgacatggttactaaaattgcctttatcatct-gagtcatactaag 196  Q
    ||||||||||||||| ||||| |||||||||| ||| |||||  ||| |  |||| | |||||||||||||||||||||||||||| |||||||||||||    
T  22842805 gaaatgtcctggaacctaactcagctacgaattattactaaataaaagaa-acatcaaatggttactaaaattgcctttatcatcttgagtcatactaag 22842903  T
Q  197 aaatatctcatttagtttagt-aaaaatgaatgtgttacacatttgaaccacaaattttctttccaactgtagtagtgggtaaatgttttttcaatgttt 295  Q
    |||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  22842904 aaacgtctcatttagtttagtgaaaaatgaatgtgttacacatttgaaccacaaattttctttccaactgtagtagtgggtaaatgttttttcaattttt 22843003  T
Q  296 acatataaagtgtttgatgctaaattgaatatgtgaaatcaagacatc 343  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||    
T  22843004 acatattaagtgtttgatgctaaattgaatatgtgaaatcaaaacatc 22843051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 8 - 344
Target Start/End: Original strand, 22840600 - 22840933
Alignment:
Q  8 atgcttgtgtagttctgttcggtgtttattatttataagattttgtcctaagtgaagaaaaaattgcaagtctaatttgggtcctagtaagaaatgtcct 107  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||  ||||||||  ||||||| || ||||||||||||||||| |||||||||||||    
T  22840600 atgcttctgtagttctgtttggtgtttattatttataagattttgtggtaagtgaaagaaaaatttcatgtctaatttgggtcctactaagaaatgtcct 22840699  T
Q  108 ggaacataacttagctacgaatcatttctaaaagaaacatcacatgacatggttactaaaattgcctttatcatctgagtcatactaagaaatatctcat 207  Q
    ||||| ||     ||||||||| |||||| ||||||||||  ||||||  |||||||||| ||||||||||||||||||||  |||||||||| ||||||    
T  22840700 ggaaccta-----gctacgaattatttctgaaagaaacatttcatgaccaggttactaaatttgcctttatcatctgagtccaactaagaaatgtctcat 22840794  T
Q  208 ttagtttagtaaaaatgaatgtgttacacatttgaaccaca-aattttctttccaactgtagtagtgggtaaatgttttttcaatgtttacata--taaa 304  Q
    |||||||||||||||||||||||| ||||||||||||||||   |||| ||||||||||||| || || | || | ||||||||| ||||||||  | ||    
T  22840795 ttagtttagtaaaaatgaatgtgtcacacatttgaaccacatttttttttttccaactgtagaagcggatgaacg-tttttcaatatttacatattttaa 22840893  T
Q  305 gtgtttgatgctaaattgaatatgtgaaatcaagacatca 344  Q
     |||||||||| ||| ||||||| |||||| || ||||||    
T  22840894 atgtttgatgcaaaaatgaatatatgaaattaaaacatca 22840933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 23 - 334
Target Start/End: Original strand, 22886060 - 22886368
Alignment:
Q  23 tgttcggtgtttattatttataagattttgtcctaagtgaagaaaaaattgcaagtctaatttgggtcctagtaagaaatgtcctggaacataacttagc 122  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||| |||||||| |||||||| ||||     | ||| ||||    
T  22886060 tgttcggtgtttattatttataagattttgtgctaagtgaaggaaaaattgcatgtctaattcgggtcctactaagaaatttcct-----agaacctagc 22886154  T
Q  123 tacgaatcatttctaaaagaaacatcacatgacatggttactaaaattgcctttatcatctgagtcatactaagaaatatctcatttagtttagtaaaaa 222  Q
    ||||||| ||| ||||||||||||||     |||||||||||||||||||| |||||||||| ||| ||||||||||| |||||||||||||||| || |    
T  22886155 tacgaattattactaaaagaaacatc-----acatggttactaaaattgcc-ttatcatctgggtcctactaagaaatgtctcatttagtttagtgaaga 22886248  T
Q  223 tgaatgtgttacacatttgaaccacaa---------attttctttccaactgtagtagtgggtaaatgttttttcaatgtttacatataaagtgtttgat 313  Q
     |||||||||| ||||||||| |||||         ||||| |||||||| |||||||||||| |||||||||| ||  ||||||||| |||||||||||    
T  22886249 -gaatgtgttatacatttgaatcacaatttttttttattttttttccaacagtagtagtgggtgaatgtttttttaacatttacatattaagtgtttgat 22886347  T
Q  314 gctaaattgaatatgtgaaat 334  Q
    |||||||||||||||||||||    
T  22886348 gctaaattgaatatgtgaaat 22886368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 22841175 - 22841393
Alignment:
Q  4 aataatgcttgtgtagttctgttcggtgtttattatttataagattttgtcctaagtgaagaaaaaattgcaagtctaatttgggtcctagtaagaaatg 103  Q
    |||||| ||| || |||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||    
T  22841175 aataattcttatgcagttatgttcagtgtttattatttataagattttgtccaaagtgaagaaaaaattgcaagtcttatttgggtcctactaagaaatg 22841274  T
Q  104 tcctggaacataacttagctacgaatcatttctaaaagaaacatcacatgacatggttactaaaattgcctttatcatctgagtcatactaagaaatatc 203  Q
    ||||||||| ||||||||||| |||| ||  | ||||||||||||     | ||||||||||| ||||| | | |||| || ||| ||||||||||| ||    
T  22841275 tcctggaacctaacttagctatgaattatcaccaaaagaaacatc-----aaatggttactaatattgcgtatctcatttgggtcctactaagaaatgtc 22841369  T
Q  204 tcatttagtttagtaaaaatgaat 227  Q
    ||||||||||||||||||||||||    
T  22841370 tcatttagtttagtaaaaatgaat 22841393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 110 - 334
Target Start/End: Original strand, 22810283 - 22810523
Alignment:
Q  110 aacataacttagctacgaatcatttctaaaagaaacatcacatgacatggttactaaaattg-cctttatcatctgagtcatactaagaaatatctcatt 208  Q
    |||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||  |||||||||||||||||  |||||||||| |||||||    
T  22810283 aacataacttagctacgaattattacttaaagaaacatcacatgacatggttactaaaattttcctttatcatctgagtccaactaagaaatgtctcatt 22810382  T
Q  209 tagtttagtaaaaatgaatgtgttacacatttgaacca----------------caaattttctttccaactgtagtagtgggtaaatgttttttcaatg 292  Q
    |||||||||||||||||||||||||||||||||||  |                || |||||||||||| ||||||||| |||  |||| |||||||| |    
T  22810383 tagtttagtaaaaatgaatgtgttacacatttgaataaatgtgcacatttgaaccacattttctttccatctgtagtagcgggggaatg-tttttcaacg 22810481  T
Q  293 tttacatataaagtgtttgatgctaaattgaatatgtgaaat 334  Q
    ||||||||| ||||||| ||||||||||||||||||||||||    
T  22810482 tttacatattaagtgttcgatgctaaattgaatatgtgaaat 22810523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 32 - 226
Target Start/End: Original strand, 22894523 - 22894712
Alignment:
Q  32 tttattatttataagattttgtcctaagtgaagaaaaaattgcaagtctaatttgggtcctagtaagaaatgtcctggaacataacttagctacgaatca 131  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||| |||| |    
T  22894523 tttattatgtataagattttgtcctaggtgaagaaaaaattgcaagtctaatttgggtcctactaagaaatgtcttggaacctaacttagctatgaatta 22894622  T
Q  132 tttctaaaagaaacatcacatgacatggttactaaaattgcctttatcatctgagtcatactaagaaatatctcatttagtttagtaaaaatgaa 226  Q
    |  | ||||||||||||     | |||||||||||||| || | | |||| || ||| ||||||||||| |||||||||||||||||||||||||    
T  22894623 tcaccaaaagaaacatc-----aaatggttactaaaatcgcgtatctcatttgggtcctactaagaaatgtctcatttagtttagtaaaaatgaa 22894712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 22831566 - 22831745
Alignment:
Q  1 atgaataatgcttgtgtagttctgttcggtgtttattatttataagattttgtcctaagtgaagaaaaaattgcaagtctaatttgggtcctagtaagaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| | |||||||||| |||| ||||||    
T  22831566 atgaataatgcttgtgtagttctgttcggtgtttattatttataagattttgtccaaagtgaagtaaaaattgcatgcctaatttgggacctactaagaa 22831665  T
Q  101 atgtcctggaacataacttagctacgaatcatttctaaaagaaacatcacatgacatggttactaaaattgcctttatcatctgag 186  Q
    |||||||||||| ||     ||||||||| ||| || ||||||||||||| |||||  ||| || |||||||| ||||||||||||    
T  22831666 atgtcctggaaccta-----gctacgaattattactgaaagaaacatcacttgacaaagtttcttaaattgcc-ttatcatctgag 22831745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 22858954 - 22859042
Alignment:
Q  1 atgaataatgcttgtgtagttctgttcggtgtttattatttataagattttgtcctaagtgaagaaaaaattgcaagtctaatttgggt 89  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||| |||||||||||||    
T  22858954 atgaacaatgcttgtgtagttctgttcggtgtttgttatttataagattttgtgctaagtgaaggaaaaattgcatgtctaatttgggt 22859042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 32 - 122
Target Start/End: Original strand, 22876488 - 22876577
Alignment:
Q  32 tttattatttataagattttgtcctaagtgaagaaaaaattgcaagtctaatttgggtcctagtaagaaatgtcctggaacataacttagc 122  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||    
T  22876488 tttattatttatat-attttgtcctaagtgaagaaaaaattgcaagtctaatttggatcctactaagaaatgtcctggaacttaacttagc 22876577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 22815563 - 22815679
Alignment:
Q  1 atgaataatgcttgtgtagttctgttcggtgttta-ttatttataagattttgtcctaagtgaagaaaaaattgcaagtctaatttgggtcctag----t 95  Q
    ||||| ||||||| |||||||||||| | |||||  |||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||    |    
T  22815563 atgaacaatgcttctgtagttctgtttgatgttttgttatttataagattttgtgctaagtgaaggaaaaattgcatgtctaatttgggtcctaggtact 22815662  T
Q  96 aagaaatgtcctggaac 112  Q
    |||||||||||||||||    
T  22815663 aagaaatgtcctggaac 22815679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 4 - 140
Target Start/End: Original strand, 22873683 - 22873819
Alignment:
Q  4 aataatgcttgtgtagttctgttcggtgtttattatttataagattttgtcctaagtgaagaaaaaattgcaagtctaatttgggtcctagtaagaaatg 103  Q
    |||||||||| || |||||| ||| |||||||||||||||| |||||||||||||||||||||||| ||||| |||  |||||| ||||  | ||||||     
T  22873683 aataatgcttatgcagttctattcagtgtttattatttatatgattttgtcctaagtgaagaaaaatttgcaggtcacatttggttcctgcttagaaata 22873782  T
Q  104 tcctggaacataacttagctacgaatcatttctaaaa 140  Q
    ||| ||||| ||||||| |||||| | ||| ||||||    
T  22873783 tcccggaacctaacttacctacgacttattactaaaa 22873819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 207 - 334
Target Start/End: Original strand, 22859105 - 22859231
Alignment:
Q  207 tttagtttagtaaaaatgaatgtgttacacatttgaaccacaaattttctttccaactgtagtagtgggtaaatgttttttcaatgtttacatat--aaa 304  Q
    ||||||||||| ||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||  |||| |||||||| ||||| ||||   ||    
T  22859105 tttagtttagtgaaaaa-aatgtgttacacatttgaaccacaaattttctttccatctgtagtagtgggggaatg-tttttcaacgtttatatattcgaa 22859202  T
Q  305 gtgtttgatgctaaattgaatatgtgaaat 334  Q
    ||  ||||||| ||||||||||||||||||    
T  22859203 gt-cttgatgcaaaattgaatatgtgaaat 22859231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 234 - 344
Target Start/End: Original strand, 22831794 - 22831903
Alignment:
Q  234 cacatttgaaccacaaattttctttccaactgtagtagtgggtaaatgttttttcaatgtttacatataaagtgtttgatgctaaattgaatatgtgaaa 333  Q
    |||||||||||||||| ||||||||||| ||||||| |||||  ||| ||||| ||| || | ||||| ||||||||||||||||||||||| |||||||    
T  22831794 cacatttgaaccacaatttttctttccatctgtagttgtgggggaatattttt-caacgtattcatattaagtgtttgatgctaaattgaatgtgtgaaa 22831892  T
Q  334 tcaagacatca 344  Q
    | || ||||||    
T  22831893 ttaaaacatca 22831903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 160 - 241
Target Start/End: Original strand, 22873811 - 22873892
Alignment:
Q  160 ttactaaaattgcctttatcatctgagtcatactaagaaatatctcatttagtttagtaaaaatgaatgtgttacacatttg 241  Q
    ||||||||||||| ||| |||| || ||| ||||||||||| ||||||||||| || | |||||||||| ||||||||||||    
T  22873811 ttactaaaattgcatttctcatttgggtcctactaagaaatgtctcatttagtatactgaaaatgaatgggttacacatttg 22873892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 22881124 - 22881189
Alignment:
Q  38 atttataagattttgtcctaagtgaagaaaaaattgcaagtcta-atttgggtcctagtaagaaat 102  Q
    ||||||||||||||||||||||||||||||||||| |||||| | ||||| |||||| ||||||||    
T  22881124 atttataagattttgtcctaagtgaagaaaaaattacaagtcaacatttgtgtcctactaagaaat 22881189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 284 - 344
Target Start/End: Original strand, 22894777 - 22894837
Alignment:
Q  284 ttttcaatgtttacatataaagtgtttgatgctaaattgaatatgtgaaatcaagacatca 344  Q
    |||||||||||||| |||  ||||||||||||||||||||||||||||||| || ||||||    
T  22894777 ttttcaatgtttacgtattgagtgtttgatgctaaattgaatatgtgaaattaaaacatca 22894837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 22810179 - 22810258
Alignment:
Q  1 atgaataatgcttgtgtagttctg---ttcggtgtttattatttataagattttgtcctaagtgaagaaaaaattgcaagt 78  Q
    ||||||||||||| ||||||||||   |||  |||||||||||||||||||||| | |||||||||||||||||| |||||    
T  22810179 atgaataatgcttctgtagttctgctgttcaatgtttattatttataagatttt-ttctaagtgaagaaaaaattacaagt 22810258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 284 - 344
Target Start/End: Original strand, 22841468 - 22841528
Alignment:
Q  284 ttttcaatgtttacatataaagtgtttgatgctaaattgaatatgtgaaatcaagacatca 344  Q
    |||||||||||||| |||  | ||||||||||||||||||||||||||||| || ||||||    
T  22841468 ttttcaatgtttacgtattgaatgtttgatgctaaattgaatatgtgaaattaaaacatca 22841528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 262
Target Start/End: Original strand, 22815941 - 22816011
Alignment:
Q  191 actaagaaatatctcatttagtttagtaaaaatgaatgtgttacacatttgaaccacaaattttctttccaa 262  Q
    ||||||| || |||||||| || || | |||| |||||||||||||||||||||||| ||||||||||||||    
T  22815941 actaagatatgtctcattttgtctattgaaaa-gaatgtgttacacatttgaaccaccaattttctttccaa 22816011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 328
Target Start/End: Original strand, 22816015 - 22816061
Alignment:
Q  283 tttttcaatgtttacat-ataaagtgtttgatgctaaattgaatatg 328  Q
    |||||||||||| |||| || ||||||||||||||||||||||||||    
T  22816015 tttttcaatgttcacattattaagtgtttgatgctaaattgaatatg 22816061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 243
Target Start/End: Original strand, 22831748 - 22831785
Alignment:
Q  206 atttagtttagtaaaaatgaatgtgttacacatttgaa 243  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  22831748 atttagtttagtgaaaattaatgtgttacacatttgaa 22831785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 21150179 - 21149959
Alignment:
Q  1 atgaataatgcttgtgtagttctgttcggtgtttattatttataagattttgtcctaagtgaagaaaaaattgcaagtctaatttgggtcctagtaagaa 100  Q
    ||||| ||||||| |||||||||||| | |||||||||||||||||||||||| |||||||||| |||||||||| ||||||               |||    
T  21150179 atgaacaatgcttctgtagttctgtttgatgtttattatttataagattttgtgctaagtgaaggaaaaattgcatgtctaa---------------gaa 21150095  T
Q  101 atgtcctggaacataacttagctacgaatcatttctaaaagaaacatcacatgacatggttactaaaattgcctttatcatctgagtcatactaagaaa- 199  Q
    |||||| ||||| ||     ||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||  ||||| ||||||||||     
T  21150094 atgtccgggaaccta-----gctacgaattattactaaaagaaacatcacatgacatggttactaaaattgtctttatcattcgagtcctactaagaaat 21150000  T
Q  200 tatctcatttagtttagtaaaaatgaatgtgttacacatttg 241  Q
    | |||||||||||||||||||||||  |||||||||| ||||    
T  21149999 tgtctcatttagtttagtaaaaatg-gtgtgttacacgtttg 21149959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 268 - 344
Target Start/End: Complemental strand, 21149910 - 21149835
Alignment:
Q  268 gtagtgggtaaatgttttttcaatgtttacatataaagtgtttgatgctaaattgaatatgtgaaatcaagacatca 344  Q
    ||||||||| ||||||||| |||||||||| | | |||||||||||||||||||||||||||||||| || ||||||    
T  21149910 gtagtgggtgaatgttttt-caatgtttacgtgttaagtgtttgatgctaaattgaatatgtgaaattaaaacatca 21149835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University