View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13180_high_7 (Length: 352)
Name: NF13180_high_7
Description: NF13180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13180_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 150 - 340
Target Start/End: Original strand, 5250019 - 5250209
Alignment:
| Q |
150 |
tcaatggccaaaaacctttgcaagttgatcttagagacatgaaggttttgagaggaagaaaagaaaggatgtattcaagaatttcaggtggtaatttgct |
249 |
Q |
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| T |
5250019 |
tcaatggccaaaaacctttgcaagttgatcttagagacatgaaggttttgagaggaagaaaagaaaggatgtattcaagaatttcaggtggtaatttgct |
5250118 |
T |
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| Q |
250 |
ccaaatagttggatccattggaagtgatttaagattgatgtgagtgatgttgtgattgttcatttttgtgactatgttaaggttgtttttg |
340 |
Q |
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| T |
5250119 |
ccaaatagttggatccattggaagtgatttaagattgatgtgagtgatgttgtgattgttcatttttgtgactatgttaaggttgtttttg |
5250209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 5249870 - 5249927
Alignment:
| Q |
1 |
agaaatattacgccatgttccaaggttgcaatcataaagaggaaagtgacggtggaat |
58 |
Q |
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| T |
5249870 |
agaaatattacgccatgttccaaggttgcaatcataaagaggaaagtgacggtggaat |
5249927 |
T |
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