View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13180_low_10 (Length: 380)
Name: NF13180_low_10
Description: NF13180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13180_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 14 - 376
Target Start/End: Original strand, 9934807 - 9935169
Alignment:
| Q |
14 |
tgagagtattagtaggatctagaaaaccagttttgtatgttnnnnnnnnttgtttaaattctagtgatgaattaatccggtttgttgaactaaccggtat |
113 |
Q |
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| T |
9934807 |
tgagattattagtaggatctaaaaaaccagttttgtatgttgggggtggttgtttaaattctagtgatgaattaatccggtttgttgaactaaccggtat |
9934906 |
T |
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| Q |
114 |
tcctgttgcgagtactttaatgggacttggttgttaccctattggaggtgaatattctctttcaatgttgggtttgcatggtacggtttatgctaattat |
213 |
Q |
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| T |
9934907 |
tcctgttgcgagtactttaatgggacttggttgttaccctattggaggtgaatattctctttcaatgttgggtttgcatggtacggtttatgctaattat |
9935006 |
T |
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| Q |
214 |
gctgttgataatagtgatttgttgcttgcttttggggctaggtttgatgatagagttactggaaagttagaaacttttgctagtagggctaagattgttc |
313 |
Q |
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| T |
9935007 |
gctgttgataatagtgatttgttgcttgcttttggggttaggtttgatgatagagttactggaaagttagaaacttttgctagtagggctaagattgttc |
9935106 |
T |
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| Q |
314 |
atatagatattgattcagctgagattgggaagaataagattccacatgtttcgatctgtgctg |
376 |
Q |
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| T |
9935107 |
atatagatattgattcagctgagattgggaagaataagattccacatgtttcgatttgtgctg |
9935169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 188 - 351
Target Start/End: Original strand, 3472405 - 3472568
Alignment:
| Q |
188 |
tgcatggtacggtttatgctaattatgctgttgataatagtgatttgttgcttgcttttggggctaggtttgatgatagagttactggaaagttagaaac |
287 |
Q |
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| T |
3472405 |
tgcatgggacagtttatgctaattatgcggttgataagagtgatcttttgcttgcgtttggggttaggtttgatgatcgggttactgggaagcttgaggc |
3472504 |
T |
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| Q |
288 |
ttttgctagtagggctaagattgttcatatagatattgattcagctgagattgggaagaataag |
351 |
Q |
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| T |
3472505 |
ttttgcgagccgggcgaagattgttcatattgatattgatgctgctgagattgggaagaataag |
3472568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 63 - 374
Target Start/End: Original strand, 45476802 - 45477113
Alignment:
| Q |
63 |
ttgtttaaattctagtgatgaattaatccggtttgttgaactaaccggtattcctgttgcgagtactttaatgggacttggttgttaccctattggaggt |
162 |
Q |
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| T |
45476802 |
ttgtttgaattctagtgatgaattgaagcggtttgtggagttaactggtgttcctgttgctagtactttgatgggattaggtagttatcctattggaggt |
45476901 |
T |
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| Q |
163 |
gaatattctctttcaatgttgggtttgcatggtacggtttatgctaattatgctgttgataatagtgatttgttgcttgcttttggggctaggtttgatg |
262 |
Q |
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| T |
45476902 |
gaacattctctttcaatgttgggtatgcatggaactgtttatgctaattatgctgttgataatagtgatctgttgcttgcttttggggttaggtttgatg |
45477001 |
T |
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| Q |
263 |
atagagttactggaaagttagaaacttttgctagtagggctaagattgttcatatagatattgattcagctgagattgggaagaataagattccacatgt |
362 |
Q |
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| T |
45477002 |
atagagttactggaaagttagaagcttttgctagtagggctaagattgttcatatagatattgattcagctgagattgggaagaataagattccacatct |
45477101 |
T |
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| Q |
363 |
ttcgatctgtgc |
374 |
Q |
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| T |
45477102 |
gtcgatttgtgc |
45477113 |
T |
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