View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13180_low_15 (Length: 322)
Name: NF13180_low_15
Description: NF13180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13180_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 13 - 306
Target Start/End: Complemental strand, 39238471 - 39238178
Alignment:
| Q |
13 |
atactcctagaatcattttattgaaggtcataaattttggtaaagttatcttgttaaatatacatgttatgttgtgtgaatgcagggagggatagtattg |
112 |
Q |
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| T |
39238471 |
atactcctagaatcattttattgaaggtcataaattttggtaaagttatcttgttaaatatacatgttatgttgtgtgaatgcagggagggatagtattg |
39238372 |
T |
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| Q |
113 |
ggtccttctgttcttggtcgaaacaaaacatttgcagatgctgtttttcctctaagaagtgtgatggtgattgaaacaatggcaaacgttggtcttttat |
212 |
Q |
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| T |
39238371 |
ggtccttctgttcttggtcgaaacaaaacatttgcagatgctgtttttcctctaagaagtgtgatggtgattgaaacaatggcaaacgttggtcttttat |
39238272 |
T |
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| Q |
213 |
attttctattcttggttggagtaggcatggatgcatctgcactacgacgcataggtagaaaatcaattaccatagcagtagctggtatgatatt |
306 |
Q |
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| T |
39238271 |
attttctattcttggttggagtaggcatggatgcatctgcactacgacgcataggtagaaaatcaattaccatagcagtagctggtatgatatt |
39238178 |
T |
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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 133 - 231
Target Start/End: Complemental strand, 44056482 - 44056384
Alignment:
| Q |
133 |
aaacaaaacatttgcagatgctgtttttcctctaagaagtgtgatggtgattgaaacaatggcaaacgttggtcttttatattttctattcttggttgg |
231 |
Q |
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| T |
44056482 |
aaacgaaatatttgccaatgcagttttccctctaagaagtgtgatggtgattgaaacaatggcgaatgttggtcttctttattttcttttcttggttgg |
44056384 |
T |
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