View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13180_low_16 (Length: 311)
Name: NF13180_low_16
Description: NF13180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13180_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 781371 - 781270
Alignment:
| Q |
15 |
gaggatagcaccattctaactttctaacataattttgcaccagagaagtccatgttaggatgctgcaaaacataaaatcaagatataagcaaattaatta |
114 |
Q |
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| T |
781371 |
gaggatagcatcattctaactttctaagataattttgcaccagagaagtccatgttaggatgctgcaaaacataaaatcaag--gtaagcaaattaagta |
781274 |
T |
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| Q |
115 |
aggg |
118 |
Q |
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|||| |
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| T |
781273 |
aggg |
781270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 204 - 311
Target Start/End: Complemental strand, 781183 - 781069
Alignment:
| Q |
204 |
caatttatacatatgttacaagctgtttccataaactctccgaaacaatctcacaaatg----tttacgtcaatagatggcaaa---ggcttacctgact |
296 |
Q |
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| T |
781183 |
caatttatacatatgttagaagctgtttccataagctctccaaaacaatctcacaaatgcttatatatgtcgatagatggcaaatgcggcttacctgact |
781084 |
T |
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| Q |
297 |
cataaattttttcat |
311 |
Q |
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| T |
781083 |
cataaatttcttcat |
781069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 769869 - 769913
Alignment:
| Q |
48 |
tttgcaccagagaagtccatgttaggatgctgcaaaacataaaat |
92 |
Q |
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| T |
769869 |
tttgcacccgagaagtccatgttaggatgctgcaaaacataaaat |
769913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 277
Target Start/End: Original strand, 37734070 - 37734124
Alignment:
| Q |
223 |
aagctgtttccataaactctccgaaacaatctcacaaatgtttacgtcaatagat |
277 |
Q |
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| T |
37734070 |
aagctatttccataaactctccaaaacaatttcacaaatgtttacatcagtagat |
37734124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 277
Target Start/End: Original strand, 19304998 - 19305052
Alignment:
| Q |
223 |
aagctgtttccataaactctccgaaacaatctcacaaatgtttacgtcaatagat |
277 |
Q |
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| T |
19304998 |
aagctgtttccacaaattctcccacacaatctcacaaatgcttatgtcaatagat |
19305052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 216 - 259
Target Start/End: Original strand, 11415219 - 11415262
Alignment:
| Q |
216 |
atgttacaagctgtttccataaactctccgaaacaatctcacaa |
259 |
Q |
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| T |
11415219 |
atgttataagctgtttccataaactctctaaaacaatctcacaa |
11415262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 277
Target Start/End: Original strand, 43115132 - 43115182
Alignment:
| Q |
227 |
tgtttccataaactctccgaaacaatctcacaaatgtttacgtcaatagat |
277 |
Q |
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| T |
43115132 |
tgtttccataaactcttccaaacaatctcacaagtgattatgtcaatagat |
43115182 |
T |
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