View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13180_low_17 (Length: 303)
Name: NF13180_low_17
Description: NF13180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13180_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 11 - 289
Target Start/End: Original strand, 32095473 - 32095751
Alignment:
| Q |
11 |
caaaggatacaagagtgtgatcctctatttatactaaagctggagagtccctttgcctatttttcatactgattcgctcacaacttgtgtcttactcaat |
110 |
Q |
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| T |
32095473 |
caaaggatacaagagtgtgatcctctatttatactaaagctggagagtccctttgcctatttttcatactgattcgctcacaacttgtgtcttactcaat |
32095572 |
T |
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| Q |
111 |
gcttagtgctccactcaatttttaagcaagttacaagattaaatattcactaaaacaaaatcttacacattcataagagtcttcgtctttcactttatga |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32095573 |
gcttagtgctccactcaatttttaagcaagttacaagattaaatattcactaaaacaaaatcttacacattcataagagtcttcgtctttcactttatga |
32095672 |
T |
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| Q |
211 |
attaccttctaattacatctccaaattggtgcaccatctctctgcagtcctgaattaccggttccatctgagtctgcac |
289 |
Q |
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| T |
32095673 |
attaccttctaattacatctccaaattggtgcaccatctctctgcagtcctgaattaccggttccatctgagtctgcac |
32095751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 32089576 - 32089795
Alignment:
| Q |
14 |
aggatacaagagtgtgatcctctatttatactaaagctggagagtccctttgcctatttttcatactgattcgctcacaacttgtgtcttactcaatgct |
113 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||| |||||| ||||||| ||||||||||||| ||||| |
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| T |
32089576 |
aggatacaagagtgtgatcctctatttaaactaaagctggagtgtccctttccctatttttcataatgattcactcacaatttgtgtcttactcgatgct |
32089675 |
T |
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| Q |
114 |
tagtgctccactcaatttttaagcaagttacaagattaaatattcactaaaacaaaatcttacacattcataagagtcttcgtctttcactttatgaatt |
213 |
Q |
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||||||| || | ||||||||||||||||| |||||||||||| ||||||||||||||||||| ||| ||||||||||||| |||||||| |||||||| |
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| T |
32089676 |
tagtgctgcagttaatttttaagcaagttaaaagattaaatatccactaaaacaaaatcttacgcatccataagagtcttcatctttcac-atatgaatt |
32089774 |
T |
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| Q |
214 |
accttctaattacatctccaa |
234 |
Q |
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| T |
32089775 |
accttctaattacatctccaa |
32089795 |
T |
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