View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13180_low_19 (Length: 293)
Name: NF13180_low_19
Description: NF13180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13180_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 38564546 - 38564821
Alignment:
| Q |
1 |
tgagacatgcacgtaaaccactatcacctcctctgtgttctcatcttaaaattcaatagtggctagctagagtcatatatagcaaaacttaatcttttaa |
100 |
Q |
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|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38564546 |
tgagacttgcacgtaaaccactatcccctcctctgtgttctcatcttaaaattcaatagtggctagctagagtcatatatagcaaaacttaatcttttaa |
38564645 |
T |
|
| Q |
101 |
atgattgtgcaaagttttattatcatatgatgaatttgaagccgcggtgcatgcatattatgcgttctacgcaagtcaatgataggaggcacgtataggg |
200 |
Q |
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|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38564646 |
atgattgtgcaaggttttattatcatatgatgagtttgaagccgcggtgcatgcatattatgcgttctacgcaagtcaatgataagaggcacgtataggg |
38564745 |
T |
|
| Q |
201 |
ccac-tcaacttagaatatcctacccattacctttgaaaaatgttaataggaatagaacaccacacatgtttggga |
275 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38564746 |
ccacttcaacttagaatatcctacccattacctttgaaaaatgttaataggaatagaacaccacacatgtttggga |
38564821 |
T |
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