View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13180_low_22 (Length: 252)
Name: NF13180_low_22
Description: NF13180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13180_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 23904483 - 23904721
Alignment:
| Q |
1 |
tgcttatgtgttcacaagctatgtatgccaatgacaatagaaatgctaatgatcttttaaagcagattaggcaacattcttcaccctttggagatgcatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23904483 |
tgcttatgtgttcacaagctatgtatgccaatgacaatagaaatgctaatgatcttttaaagcagattaggcaacattcttcaccctttggagatgcatc |
23904582 |
T |
|
| Q |
101 |
acaaagggtggctcattactttgccgatggcgttgaggctcgccttgtaggcgatagagctggtgcacaaacattctattcctcgccgagcactaagaga |
200 |
Q |
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||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23904583 |
acaaagggtggctcattactttgccaatggccttgaggctcgccttgtaggcgatagagctggtgcacaaacattctattcctcgccgagcactaagaga |
23904682 |
T |
|
| Q |
201 |
attactgctgctgagtttttgaaagcatatcaagttcat |
239 |
Q |
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| T |
23904683 |
attactgctgctgagtttttgaaagcatatcaagttcat |
23904721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 23922501 - 23922263
Alignment:
| Q |
1 |
tgcttatgtgttcacaagctatgtatgccaatgacaatagaaatgctaatgatcttttaaagcagattaggcaacattcttcaccctttggagatgcatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23922501 |
tgcttatgtgttcacaagctatgtatgccaatgacaatagaaatgctaatgatcttttaaagcagattaggcaacattcttcaccctttggagaagcatc |
23922402 |
T |
|
| Q |
101 |
acaaagggtggctcattactttgccgatggcgttgaggctcgccttgtaggcgatagagctggtgcacaaacattctattcctcgccgagcactaagaga |
200 |
Q |
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| T |
23922401 |
tcaaagggtggctcattactttgccaatggccttgaggcgcgccttgtatgcgatagagcttgtgcgcaaacattctattcctcacctagcaccaagaga |
23922302 |
T |
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| Q |
201 |
attactgctgctgagtttttgaaagcatatcaagttcat |
239 |
Q |
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| T |
23922301 |
atcactgctgctgagtttttgaaagcatatcaagttcat |
23922263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 23912486 - 23912246
Alignment:
| Q |
1 |
tgcttatgtgttcacaagctatgtatgccaatgacaatagaaatgctaatgatcttttaaagcagattaggcaacattcttcaccctttggagatgcatc |
100 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||| || ||||||||||| || | |||||||||||||||||||||||||||| ||| |||| | | |
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| T |
23912486 |
tgcttatgtgttcacaatctgtgtatgccaatgacaacaggaatgctaatgagctactgaagcagattaggcaacattcttcaccctctggggatggacc |
23912387 |
T |
|
| Q |
101 |
acaaagggtggctcattactttgccgatggcgttgaggctcgccttgtaggcgatagagctggtgcacaaacattctattcctcgccgagcactaagaga |
200 |
Q |
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||||||| ||||||||||||||||| ||||| ||||||| ||| |||| ||||| | || | |||||||||||||||||||| |||||||| ||||| |
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| T |
23912386 |
acaaaggttggctcattactttgccaatggccttgaggcacgcattgtcggcgacggtactagagcacaaacattctattcctccccgagcaccaagagg |
23912287 |
T |
|
| Q |
201 |
attactgctgctgagtttttgaaagcatatcaagttcatct |
241 |
Q |
| |
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|| || |||||||||||||||||||||||||||||||||| |
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| T |
23912286 |
atctctactgctgagtttttgaaagcatatcaagttcatct |
23912246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 124
Target Start/End: Original strand, 41597707 - 41597824
Alignment:
| Q |
7 |
tgtgttcacaagctatgtatgccaatgacaatagaaatgctaatgatcttttaaagcagattaggcaacattcttcaccctttggagatgcatcacaaag |
106 |
Q |
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||||| |||||||| | | ||| ||||||||||| | ||||||||| | || |||||||||||| | |||||||| || | || ||||||||||| || |
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| T |
41597707 |
tgtgtgcacaagctgtatctgctaatgacaataggactgctaatgaattgttgaagcagattaggaaccattcttctccttcaggtgatgcatcacagag |
41597806 |
T |
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| Q |
107 |
ggtggctcattactttgc |
124 |
Q |
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|||||||||||||||| |
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| T |
41597807 |
aatggctcattactttgc |
41597824 |
T |
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