View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13180_low_23 (Length: 249)

Name: NF13180_low_23
Description: NF13180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13180_low_23
NF13180_low_23
[»] chr3 (2 HSPs)
chr3 (1-242)||(45382663-45382905)
chr3 (86-132)||(47362558-47362604)
[»] chr6 (12 HSPs)
chr6 (57-137)||(27661703-27661783)
chr6 (100-137)||(26650237-26650274)
chr6 (100-137)||(26756205-26756242)
chr6 (101-141)||(12627824-12627864)
chr6 (97-137)||(29449688-29449728)
chr6 (162-212)||(8148268-8148318)
chr6 (156-209)||(20809178-20809231)
chr6 (108-137)||(28783014-28783043)
chr6 (98-155)||(34057962-34058019)
chr6 (175-211)||(29670971-29671007)
chr6 (98-134)||(30537508-30537544)
chr6 (161-209)||(31811989-31812037)
[»] chr7 (4 HSPs)
chr7 (97-137)||(43160491-43160531)
chr7 (99-146)||(10893872-10893919)
chr7 (95-137)||(650524-650566)
chr7 (101-137)||(18750887-18750923)
[»] chr5 (4 HSPs)
chr5 (98-137)||(28136673-28136712)
chr5 (100-137)||(645342-645379)
chr5 (101-146)||(11601688-11601733)
chr5 (161-209)||(12478334-12478382)
[»] chr8 (4 HSPs)
chr8 (162-204)||(14229600-14229642)
chr8 (97-137)||(32691750-32691790)
chr8 (98-146)||(41686804-41686852)
chr8 (98-146)||(31681833-31681881)
[»] chr2 (1 HSPs)
chr2 (95-191)||(9956949-9957045)
[»] chr4 (4 HSPs)
chr4 (87-137)||(10164460-10164510)
chr4 (99-137)||(28890768-28890806)
chr4 (105-141)||(29388374-29388410)
chr4 (97-137)||(45615427-45615467)
[»] chr1 (3 HSPs)
chr1 (101-146)||(264615-264660)
chr1 (157-197)||(27835482-27835522)
chr1 (101-137)||(43609830-43609866)


Alignment Details
Target: chr3 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 45382663 - 45382905
Alignment:
Q  1 atttttccactcatttttcattatctatgaagcactgacatgaacaccagagacatgaacaccggactccacactgacactcattcgtcaacatcagtag 100  Q
    ||||||||||||||||||| |||||||||||||||||| |         ||||||||||||| ||||| |||||||||| ||||||||||||||||||||    
T  45382663 atttttccactcatttttcgttatctatgaagcactgaga---------gagacatgaacactggacttcacactgacattcattcgtcaacatcagtag 45382753  T
Q  101 taatttaagaaaataacatatttgaatgtaatcacat-----------atgttggtgacagacacagacaaatgtcggacaccggacatgccttcgatca 189  Q
    |||||||||||||||||||||||||||||||||||||           ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  45382754 taatttaagaaaataacatatttgaatgtaatcacatatgtcggtgacatgttggtgtcagacacagacaaatgtcggacaccggacatgccttcgatca 45382853  T
Q  190 gaaatgtctgtgctacaaagttcattatttaccaattagtcacttcctttgct 242  Q
    ||| | | |||||||||||||||||||||||||||||||||| ||||||||||    
T  45382854 gaagtat-tgtgctacaaagttcattatttaccaattagtcaattcctttgct 45382905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 132
Target Start/End: Original strand, 47362558 - 47362604
Alignment:
Q  86 cgtcaacatcagtagtaatttaagaaaataacatatttgaatgtaat 132  Q
    |||||||||||||| |||||||||||||| ||||| |||||||||||    
T  47362558 cgtcaacatcagtaataatttaagaaaattacataattgaatgtaat 47362604  T

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Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 57 - 137
Target Start/End: Original strand, 27661703 - 27661783
Alignment:
Q  57 gaacaccggactccacactgacactcattcgtcaacatcagtagtaatttaagaaaataacatatttgaatgtaatcacat 137  Q
    |||||||| |||| ||||| ||||| ||||||||||||   ||||||||||||||||||| |||||| |||||||||||||    
T  27661703 gaacaccgaactcgacactaacactgattcgtcaacattgatagtaatttaagaaaataatatatttcaatgtaatcacat 27661783  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 26650274 - 26650237
Alignment:
Q  100 gtaatttaagaaaataacatatttgaatgtaatcacat 137  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26650274 gtaatttaagaaaataacatatttgaatgtaatcacat 26650237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 26756242 - 26756205
Alignment:
Q  100 gtaatttaagaaaataacatatttgaatgtaatcacat 137  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26756242 gtaatttaagaaaataacatatttgaatgtaatcacat 26756205  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 12627864 - 12627824
Alignment:
Q  101 taatttaagaaaataacatatttgaatgtaatcacatatgt 141  Q
    ||||||||||||||||||||||| |||||||||| ||||||    
T  12627864 taatttaagaaaataacatatttcaatgtaatcatatatgt 12627824  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 29449688 - 29449728
Alignment:
Q  97 gtagtaatttaagaaaataacatatttgaatgtaatcacat 137  Q
    |||||||||| ||||||||||||| ||||||||||||||||    
T  29449688 gtagtaatttcagaaaataacataattgaatgtaatcacat 29449728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 8148318 - 8148268
Alignment:
Q  162 tgtcggacaccggacatgccttcgatcagaaatgtctgtgctacaaagttc 212  Q
    ||||||||||| ||||||||||| ||| |||||||| |||||||| |||||    
T  8148318 tgtcggacaccagacatgccttccatcggaaatgtcggtgctacatagttc 8148268  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 20809231 - 20809178
Alignment:
Q  156 gacaaatgtcggacaccggacatgccttcgatcagaaatgtctgtgctacaaag 209  Q
    |||| ||||||||||||||||||||||||||||  || ||||  ||||||||||    
T  20809231 gacacatgtcggacaccggacatgccttcgatccaaagtgtcgatgctacaaag 20809178  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 137
Target Start/End: Complemental strand, 28783043 - 28783014
Alignment:
Q  108 agaaaataacatatttgaatgtaatcacat 137  Q
    ||||||||||||||||||||||||||||||    
T  28783043 agaaaataacatatttgaatgtaatcacat 28783014  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 155
Target Start/End: Original strand, 34057962 - 34058019
Alignment:
Q  98 tagtaatttaagaaaataacatatttgaatgtaatcacatatgttggtgacagacaca 155  Q
    ||||||| ||||||||| ||||| |||| ||||||||||| ||| |||| ||||||||    
T  34057962 tagtaatataagaaaatgacataattgactgtaatcacatgtgtcggtgtcagacaca 34058019  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 29670971 - 29671007
Alignment:
Q  175 acatgccttcgatcagaaatgtctgtgctacaaagtt 211  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  29670971 acatgccttcgatcagaaatgtcggtggtacaaagtt 29671007  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 134
Target Start/End: Original strand, 30537508 - 30537544
Alignment:
Q  98 tagtaatttaagaaaataacatatttgaatgtaatca 134  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  30537508 tagtaatttaagaaaataacataattgaatgttatca 30537544  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 31811989 - 31812037
Alignment:
Q  161 atgtcggacaccggacatgccttcgatcagaaatgtctgtgctacaaag 209  Q
    ||||||||||| ||||||||||| |||||||  |||| |||||||||||    
T  31811989 atgtcggacactggacatgcctttgatcagaggtgtcagtgctacaaag 31812037  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 43160491 - 43160531
Alignment:
Q  97 gtagtaatttaagaaaataacatatttgaatgtaatcacat 137  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  43160491 gtagtaatttaagaaaataacataattgaatgtaatcacat 43160531  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 146
Target Start/End: Complemental strand, 10893919 - 10893872
Alignment:
Q  99 agtaatttaagaaaataacatatttgaatgtaatcacatatgttggtg 146  Q
    |||||||||||||||| ||||| |||||||||||||||| ||||||||    
T  10893919 agtaatttaagaaaatgacataattgaatgtaatcacatgtgttggtg 10893872  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 137
Target Start/End: Original strand, 650524 - 650566
Alignment:
Q  95 cagtagtaatttaagaaaataacatatttgaatgtaatcacat 137  Q
    |||||||||||||||||||| ||||| ||||||| ||||||||    
T  650524 cagtagtaatttaagaaaatgacataattgaatgcaatcacat 650566  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 18750887 - 18750923
Alignment:
Q  101 taatttaagaaaataacatatttgaatgtaatcacat 137  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  18750887 taatttaagaaaatgacataattgaatgtaatcacat 18750923  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 28136673 - 28136712
Alignment:
Q  98 tagtaatttaagaaaataacatatttgaatgtaatcacat 137  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  28136673 tagtaatttaagaaaataacatatttcaatgtaatcacat 28136712  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 645342 - 645379
Alignment:
Q  100 gtaatttaagaaaataacatatttgaatgtaatcacat 137  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  645342 gtaatttaagaaaatgacataattgaatgtaatcacat 645379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 11601688 - 11601733
Alignment:
Q  101 taatttaagaaaataacatatttgaatgtaatcacatatgttggtg 146  Q
    |||||||||||| |||  || |||||||||||||||||||||||||    
T  11601688 taatttaagaaactaaattaattgaatgtaatcacatatgttggtg 11601733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 12478334 - 12478382
Alignment:
Q  161 atgtcggacaccggacatgccttcgatcagaaatgtctgtgctacaaag 209  Q
    ||||| |||||| |||| |||||| |||||||||||| |||||||||||    
T  12478334 atgtcagacaccagacacgccttccatcagaaatgtcggtgctacaaag 12478382  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 14229600 - 14229642
Alignment:
Q  162 tgtcggacaccggacatgccttcgatcagaaatgtctgtgcta 204  Q
    ||||||||||||||||||||||||||||||| |||| ||||||    
T  14229600 tgtcggacaccggacatgccttcgatcagaagtgtcagtgcta 14229642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 32691750 - 32691790
Alignment:
Q  97 gtagtaatttaagaaaataacatatttgaatgtaatcacat 137  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  32691750 gtagtaatttaagaaaatgacataattgaatgtaatcacat 32691790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 41686852 - 41686804
Alignment:
Q  98 tagtaatttaagaaaataacatatttgaatgtaatcacatatgttggtg 146  Q
    ||||||||||||||||||||||| |||| | ||||||||| ||||||||    
T  41686852 tagtaatttaagaaaataacatagttgagtctaatcacatgtgttggtg 41686804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 31681881 - 31681833
Alignment:
Q  98 tagtaatttaagaaaataacatatttgaatgtaatcacatatgttggtg 146  Q
    ||||||||||||||||| ||||| ||||||| |||||||| ||| ||||    
T  31681881 tagtaatttaagaaaatgacataattgaatgaaatcacatgtgtcggtg 31681833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 191
Target Start/End: Complemental strand, 9957045 - 9956949
Alignment:
Q  95 cagtagtaatttaagaaaataacatatttgaatgtaatcacatatgttggtgacagacacagacaaatgtcggacaccggacatgccttcgatcaga 191  Q
    ||||| |||||| | |||||||  |||||||| ||||| |||| |||  ||| | ||||| |||| ||||| ||||||||||||||||| |||||||    
T  9957045 cagtaataatttgacaaaataaattatttgaacgtaatgacatgtgtccgtgccggacaccgacacatgtcagacaccggacatgcctttgatcaga 9956949  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 10164460 - 10164510
Alignment:
Q  87 gtcaacatcagtagtaatttaagaaaataacatatttgaatgtaatcacat 137  Q
    ||||||| | ||||||||||||||||||  |||| ||||||||||||||||    
T  10164460 gtcaacaccggtagtaatttaagaaaatggcataattgaatgtaatcacat 10164510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 137
Target Start/End: Original strand, 28890768 - 28890806
Alignment:
Q  99 agtaatttaagaaaataacatatttgaatgtaatcacat 137  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  28890768 agtaatttaagaaaataacataattgaatgcaatcacat 28890806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 141
Target Start/End: Complemental strand, 29388410 - 29388374
Alignment:
Q  105 ttaagaaaataacatatttgaatgtaatcacatatgt 141  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  29388410 ttaagaaaatgacataattgaatgtaatcacatatgt 29388374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 45615467 - 45615427
Alignment:
Q  97 gtagtaatttaagaaaataacatatttgaatgtaatcacat 137  Q
    |||||||||||||||||| ||||| ||||| ||||||||||    
T  45615467 gtagtaatttaagaaaatgacataattgaacgtaatcacat 45615427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 264615 - 264660
Alignment:
Q  101 taatttaagaaaataacatatttgaatgtaatcacatatgttggtg 146  Q
    |||||||||||| ||||||| || ||||||||||||| ||||||||    
T  264615 taatttaagaaagtaacatacttaaatgtaatcacatgtgttggtg 264660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 27835482 - 27835522
Alignment:
Q  157 acaaatgtcggacaccggacatgccttcgatcagaaatgtc 197  Q
    |||||||||||||||| ||||||||||| ||||||| ||||    
T  27835482 acaaatgtcggacaccagacatgccttcaatcagaagtgtc 27835522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 43609866 - 43609830
Alignment:
Q  101 taatttaagaaaataacatatttgaatgtaatcacat 137  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  43609866 taatttgagaaaataacataattgaatgtaatcacat 43609830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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