View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13180_low_24 (Length: 249)
Name: NF13180_low_24
Description: NF13180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13180_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 230
Target Start/End: Complemental strand, 47947103 - 47946884
Alignment:
| Q |
11 |
cagagatagcacttggttctaccgtaggaccttattcatctcagtttaaccaacaatatgaaatcaacgttggaatattttgggtaataattaataacat |
110 |
Q |
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| T |
47947103 |
cagagatagcacttggttctaccgtaggaccttattcatctcagtttaaccaacaatatgaaatcaacgttggaatattttgggtaataattaataacat |
47947004 |
T |
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| Q |
111 |
gtgtttttgtagtgtataaaagaactattaattaatttactaattcctcttaaattgttggcttgatttaggatcgtaatgggaactggtggcttagaat |
210 |
Q |
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| T |
47947003 |
gtgtttttgtagtgtataaaagaactattaattaatttactaattcctcttaaattgttggcttgatttaggatcgtaatgggaactggtggcttagaat |
47946904 |
T |
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| Q |
211 |
gaaggataaaatcattgtag |
230 |
Q |
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| T |
47946903 |
gaaggataaaatcattgtag |
47946884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 98
Target Start/End: Complemental strand, 47919356 - 47919317
Alignment:
| Q |
59 |
accaacaatatgaaatcaacgttggaatattttgggtaat |
98 |
Q |
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| T |
47919356 |
accaacaatatgaaatcaacgttggaatatttcgggtaat |
47919317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 103
Target Start/End: Complemental strand, 47928472 - 47928430
Alignment:
| Q |
61 |
caacaatatgaaatcaacgttggaatattttgggtaataatta |
103 |
Q |
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| T |
47928472 |
caacaatatgaaatcaatgttggaatatttcaggtaataatta |
47928430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 47909559 - 47909519
Alignment:
| Q |
61 |
caacaatatgaaatcaacgttggaatattttgggtaataat |
101 |
Q |
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| T |
47909559 |
caacaatatgaaataaacgttggaatatttcaggtaataat |
47909519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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