View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13180_low_27 (Length: 242)
Name: NF13180_low_27
Description: NF13180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13180_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 39238491 - 39238714
Alignment:
| Q |
1 |
ttttttacattaacaatgcataaaaaatattctaaaaaactaaccaagatttcggctataacgcgtggctgacgaatgggcttgagtatgaagacgaaga |
100 |
Q |
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| T |
39238491 |
ttttttacattaacaatgcataaaaaatattctaaaaaactaaccaagatttcggctataacgcgtggctgacgaatgggcttgagtatgaagacgaaga |
39238590 |
T |
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| Q |
101 |
ttcgggtggcaataacaactaaaataacttgtagaatgaagagaggaagagaatagtctaaagggttatctccttgccatattccatttgttgttatcat |
200 |
Q |
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| T |
39238591 |
ttcgggtggcaataacaactaaaataacttgtagaatgaagagaggaagagaatagtctaaagggttatctccttgccatattccatttgttgttatcat |
39238690 |
T |
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| Q |
201 |
agttggtgaataacacaccatctc |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
39238691 |
agttggtgaataacacaccatctc |
39238714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 38 - 218
Target Start/End: Original strand, 44056596 - 44056776
Alignment:
| Q |
38 |
aactaaccaagatttcggctataacgcgtggctgacgaatgggcttgagtatgaagacgaagattcgggtggcaataacaactaaaataacttgtagaat |
137 |
Q |
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| T |
44056596 |
aactaaccagaatttctgctatgacgcgcggctggcgaaagggcttgagaacaaagacaaatatgcgagtggctgcaacaactaaggttaattgtaagat |
44056695 |
T |
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| Q |
138 |
gaagagaggaagagaatagtctaaagggttatctccttgccatattccatttgttgttatcatagttggtgaataacacac |
218 |
Q |
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| T |
44056696 |
gaaaagtggcagagaaaattccaaagggctatctccttgccatattccattcgttgttatcatggctggtgcataacacac |
44056776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 215
Target Start/End: Complemental strand, 2810486 - 2810406
Alignment:
| Q |
135 |
aatgaagagaggaagagaatagtctaaagggttatctccttgccatattccatttgttgttatcatagttggtgaataaca |
215 |
Q |
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|||||||||||| | |||||||| ||||||||| |||||| ||||| |||||||||||| |||| ||||||| |||||| |
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| T |
2810486 |
aatgaagagaggtatagaatagtttaaagggttttctcctgcccatacaccatttgttgttgtcattgttggtgtataaca |
2810406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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