View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13180_low_6 (Length: 552)
Name: NF13180_low_6
Description: NF13180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13180_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 13 - 533
Target Start/End: Complemental strand, 35446848 - 35446338
Alignment:
| Q |
13 |
aatatggggtatcagggtctatttaaacatatatgagtaaataaagtaaaaggacatcacaaatatataagattgaatgtatgttaaaactgtttttaac |
112 |
Q |
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| T |
35446848 |
aatatggggtatcagggtctatttaaacatatatgagtaaataaagtaaaaggacatcacaaatatataagattgaatgcatgtt----------ttaac |
35446759 |
T |
|
| Q |
113 |
tttaaaattgaacaaaatagggaaggataaaaatgttgcataccaggccaaggtcgtttaaggctatgttaatggttgcaatgtcgccgccggaagtagt |
212 |
Q |
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| T |
35446758 |
tttaaaattgaacaaaatagggaaggataaaaatgttgcataccaggccaaggtcatttaaggctatgttaatggttgcaatgtcgccaccggaagtagt |
35446659 |
T |
|
| Q |
213 |
atgctcagacaaaggaagattttccagttggtctaagtacacaacattttgctttccaaagttttttaccagttcagccaaataagttaaatgttgtcgc |
312 |
Q |
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| T |
35446658 |
atgctcagacaaaggaagattttccagttggtctaagtacacaacattttgctttccaaagttttttaccagttcagccaaataagttaaatgttgtcgc |
35446559 |
T |
|
| Q |
313 |
aggcttttaaagggtacttcctcggtttcttcttcagagcttatctgagcacagaaatacatgacctgcagaattgcatcagggtttttcatgacaattt |
412 |
Q |
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| T |
35446558 |
aggcttttaaagggtacttcctcggtttcttcttcagagcttatctgagcacagaaatacatgacctgcagaatagcatcagggtttttcatgacaattt |
35446459 |
T |
|
| Q |
413 |
gctttccttcatttccacttgtagtgcagaaaatgtaagttccaaagggtctataaggactcaaaggaacaaaatttgcaatagtttcaagtgttgcttc |
512 |
Q |
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| T |
35446458 |
gctttccttcatttccacttgtagtgcagaaaatgtaagttccaaagggtctataaggactcaaaggaacaaaatttgcaatagtttcaagtgttgcttc |
35446359 |
T |
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| Q |
513 |
tgttgttcccattagcctaca |
533 |
Q |
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| T |
35446358 |
tgttgttcccattagcctaca |
35446338 |
T |
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