View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13180_low_8 (Length: 522)
Name: NF13180_low_8
Description: NF13180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13180_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 10 - 290
Target Start/End: Complemental strand, 16704231 - 16703950
Alignment:
| Q |
10 |
aagaatataaaaacattacacaacgaaagtttacatcaaccgaacagatgtaaaaaagataaagtggaatttttaaaaatgtaggttagaattttgtatt |
109 |
Q |
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| T |
16704231 |
aagaaaataaaaacattgcacaacgaaagtttacatcaaccgagcagatgtaaaaaagataaagtggaatttttaaaaatgtaggttagaattttgtatt |
16704132 |
T |
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| Q |
110 |
ggtgaaactcgtatttccaactctttaaggtttgttttaattgttattttggtccttttgttaagtttttaggatctctttactactatttgctt-gttt |
208 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
16704131 |
ggtgaaactcgtatttctaactctttaaggtttgttttaattgttattttggtccttttgttaagtttttaggatctcttcactactatttgcttggttt |
16704032 |
T |
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| Q |
209 |
ttcattattagcaattatcatggagccaaagtgaagatttagagctaaaagagatgtattcaagccttacaatatgtgcctt |
290 |
Q |
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| T |
16704031 |
ttcattattagcaatgatcatggagccaaagtgaagattttgagctaaaagagatgtattcaagccttacaatatgtgcctt |
16703950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 289 - 504
Target Start/End: Complemental strand, 16703901 - 16703686
Alignment:
| Q |
289 |
ttactacgttaaacaacaaagattacgttcacccgtaacttggggttacggctgtaatctcacattttaccctagggtattgacctagttgtccatttgg |
388 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16703901 |
ttactacgttaaacaacaaggattacgttcacccgtaacttggggttacggctgtaatctcacattttaccctagggtattgacctagttgtccatttgg |
16703802 |
T |
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| Q |
389 |
taggatcttctacccttaggccgtgccattctctttggagaatctcttcgtgtggctgaagcttttctccaacggttctcctcctatttatggtcttaat |
488 |
Q |
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| T |
16703801 |
taggatcttctacccttaggccgtgccattctctttggagaatctcttcgtgtggctgaagcttttctccaacggttctcctcctatttatggtcttaat |
16703702 |
T |
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| Q |
489 |
ccctaaatgttgccct |
504 |
Q |
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||||||||||||||| |
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| T |
16703701 |
tcctaaatgttgccct |
16703686 |
T |
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