View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13180_low_9 (Length: 429)
Name: NF13180_low_9
Description: NF13180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13180_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 184 - 413
Target Start/End: Original strand, 52747401 - 52747640
Alignment:
| Q |
184 |
tgaacatggaatt-aattgatgctaggatacgaagctaggtaggtagcttaattcaaattacctacctaactgaaggtaaacaacacaacaacacccttt |
282 |
Q |
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| T |
52747401 |
tgaacatggaatttaattgatgctagggtacgaagctaggtaggtagcttaattcaaattacctacctacctgaaggtaaacaacagaacaacacccttt |
52747500 |
T |
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| Q |
283 |
ttatgttctgtatgtctctcccact------gcatcaatatcgatagttagc----tgcatagtttaacagtacacgcaacagcctgtgcccaatatttc |
372 |
Q |
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| T |
52747501 |
t-atgttctgtatgtctctccgactcccaatgcatcaatatcgatagttagctagctgcatagtttaacagtacacgcaacagcctgtgcccaatatttc |
52747599 |
T |
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| Q |
373 |
aatcttgctttaacatcttcaggatgatcacctggacttga |
413 |
Q |
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| T |
52747600 |
aatcttgctttaacatcttcaggatgatcacctggacttga |
52747640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 31731926 - 31731769
Alignment:
| Q |
1 |
cattggcagcagaaaacgaaaccaatcgttttctcctccttaattcatgtgatgtttatatgtgatgtgagccgccatatattgtggtccacaaaacacc |
100 |
Q |
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| T |
31731926 |
cattggcagcagaaaacgaaaccaatcgttttctcctccttaattcatgcgatgtttatatgtgatgggagccaccatatattgtggtccacaaaacacc |
31731827 |
T |
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| Q |
101 |
aataaaaatatgcaattttgaaccaatagattaatgtctggtgtctttttcaaaacaa |
158 |
Q |
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| T |
31731826 |
aataaaaatatgcaattttgaaccaatagattaatgtctggtgtctttttcaaaacaa |
31731769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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