View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13181_high_1 (Length: 890)
Name: NF13181_high_1
Description: NF13181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13181_high_1 |
 | |
|
| [»] scaffold0193 (1 HSPs) |
| | |
|
| [»] scaffold2020 (1 HSPs) |
| | |
|
| [»] scaffold0009 (2 HSPs) |
| | |
|
| [»] scaffold0226 (2 HSPs) |
| | |
|
| [»] scaffold0063 (1 HSPs) |
| | |
|
| [»] scaffold0058 (1 HSPs) |
| | |
|
| [»] scaffold0555 (1 HSPs) |
| | |
|
| [»] scaffold0236 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 564; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 17 - 628
Target Start/End: Original strand, 9302467 - 9303079
Alignment:
| Q |
17 |
agagataagaaagggacagacattaatgtgatattacatgctgtactccataagatacaatttcttttaaagggaaatctgaggacgatattgaatatgg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9302467 |
agagataagaaagggacagacattaatgtgatattacatgttgtactccataagatacaatttcttttaaagggaaatctgaggacgatattgaatatgg |
9302566 |
T |
|
| Q |
117 |
gaaatttgtgaatagtgttccgtacaccaagtccaacattgtctgagaatcgaataaaacggttt-catagaagaaagttggtgttaccacttaagataa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
9302567 |
gaaatttgtgaatagtgttccgtacaccaagtccaacattgtctgagaatcgaataaaacggttttcatagaagaaagttggtgttaccacttaagataa |
9302666 |
T |
|
| Q |
216 |
tgctnnnnnnncacaacaaattgaccattttaacctcatcgacagttaacaaccaccaaatgtttttcagcagcagtttactaccgtggccattttgtgt |
315 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9302667 |
tgctaaaaaaacacaacaaattgaccattttaacctcatcgtcagttaacaaccaccaaatgtttttcagcagcagtttactaccgtggccattttgtgt |
9302766 |
T |
|
| Q |
316 |
cgtagaacaccatatgtttcatcttaatgtactgcaaaatcatcaaaaacgataaatgagtgaaccaaaacgataacatgaaatgtgataaaagcaaaaa |
415 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9302767 |
cgcagaacaccatatgtttcatcttaatgtactgcaaaatcatcaaaaacgataaatgagtgaaccaaaacgataacatgaaatgtgataaaagcaaaaa |
9302866 |
T |
|
| Q |
416 |
agcttaagggaagggggaattgtggatatcaagctattgatcaacattgactcagaaattcaggattcactatcgagctttaattttttcaagggaaagg |
515 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9302867 |
agctaaagggaagggggaattgtggatatcaagctattgattaacattgactcagaaattcaggattcactatcgagctttaattttttcaagggaaagg |
9302966 |
T |
|
| Q |
516 |
ggaaaagttcgagtaaacccacaattataagagatttaaggtccggggattagttacgtaaagagaaggtattaccacctaaacgtctatagtactctat |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9302967 |
ggaaaagttcgagtaaacccacaattataagagatttaaggtccggggattagttacgtaaagagaaggtattaccacctaaacgtctatagtactctat |
9303066 |
T |
|
| Q |
616 |
aggaacctcttgc |
628 |
Q |
| |
|
||||||||||||| |
|
|
| T |
9303067 |
aggaacctcttgc |
9303079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 17 - 419
Target Start/End: Complemental strand, 9295674 - 9295268
Alignment:
| Q |
17 |
agagataagaaagggacagacattaatgtgatattacatgctgtactccataagatacaatttcttttaaagggaaatctgaggacgatattgaatatgg |
116 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9295674 |
agagacaagaaagggacagacattaatgtgatattacatgctgtactccataagatacaatttcttttaaagggaaatctgaggacgatattgaatatgg |
9295575 |
T |
|
| Q |
117 |
gaaatttgtgaatagtgttccgtacaccaagtccaacattgtctgagaatcgaataaaacggtttcatagaagaaagttggtgttaccacttaagataat |
216 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
9295574 |
gaaatttgtgaatagtgttccgtataccaagtccaacattgtctgagaatcgaataaaacggtttcatagaagaaagtttgtgttcccacttaagataat |
9295475 |
T |
|
| Q |
217 |
gctnnnnnnncacaacaaattgaccattttaacctcatcgacagttaacaaccaccaaatgtttttcagcag-cagtttactaccgtggccattttgtgt |
315 |
Q |
| |
|
||| || |||||| |||||||| |||||||||| | |||||||||||||| |||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
9295474 |
gct-aaaaaacaaaacaaaacgaccatttcaacctcatcggccgttaacaaccaccagatgtttttcagctgacagtttactaccgtggccattttgtgt |
9295376 |
T |
|
| Q |
316 |
----cgtagaacaccatatgtttcatcttaatgtactgcaaaatcatcaaaaacgataaatgagtgaaccaaaacgataacatgaaatgtgataaaagca |
411 |
Q |
| |
|
| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||| | |
|
|
| T |
9295375 |
cctacctagaacaccatatttttcatcttaatgtactgcaaaatcaacaaaaacgataaatgagtgaatgaaaacgataacatgaaatgtgatataagga |
9295276 |
T |
|
| Q |
412 |
aaaaagct |
419 |
Q |
| |
|
|||||||| |
|
|
| T |
9295275 |
aaaaagct |
9295268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 438 - 619
Target Start/End: Original strand, 8769118 - 8769301
Alignment:
| Q |
438 |
tggatatcaagctattgatcaacattgactcagaaattcaggattcactatcgagctttaattttttc-aagggaaaggggaaaa-gttcgagtaaaccc |
535 |
Q |
| |
|
|||| |||||||||||||| | | ||||||| ||||| ||| || || ||||||||||||||||||| |||||||||||||||| |||||| ||||||| |
|
|
| T |
8769118 |
tggagatcaagctattgattagcgatgactcataaatttaggttt-accatcgagctttaattttttctaagggaaaggggaaaaagttcgaataaaccc |
8769216 |
T |
|
| Q |
536 |
acaattataagagatttaaggtccggggattagttacgtaaagagaaggtattaccacc-taaacgtctatagtactctatagga |
619 |
Q |
| |
|
| |||| | || |||||||||| || || ||||||||||||||||||||||||| |||| |||||||||||| || ||||||||| |
|
|
| T |
8769217 |
ataatttttagtgatttaaggttcgagggttagttacgtaaagagaaggtattatcaccttaaacgtctataatattctatagga |
8769301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 732 - 794
Target Start/End: Original strand, 9303183 - 9303245
Alignment:
| Q |
732 |
gacaaagtcttttgcctcccatgagggatcaaaaccacgtagttcggtgtaaaaagccgagtg |
794 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9303183 |
gacaaagtcttttgcctcccatgagggatcaaaaccacgtagttcggtgtaaaaagccgagtg |
9303245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 753 - 794
Target Start/End: Original strand, 8769438 - 8769479
Alignment:
| Q |
753 |
tgagggatcaaaaccacgtagttcggtgtaaaaagccgagtg |
794 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||| |||| |
|
|
| T |
8769438 |
tgagggatcaaaactacgtagttcggggtaaaaagccaagtg |
8769479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 553 - 627
Target Start/End: Complemental strand, 17018967 - 17018891
Alignment:
| Q |
553 |
aaggtccggggattagttacgtaaagagaaggtatta--ccacctaaacgtctatagtactctataggaacctcttg |
627 |
Q |
| |
|
||||||||||| || |||||| ||||||||||| ||| | ||||||||||||| ||| |||||||||| |||||| |
|
|
| T |
17018967 |
aaggtccgggggttggttacgcaaagagaaggttttaagcaccctaaacgtctatggtattctataggaagctcttg |
17018891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 1e-37; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 440 - 627
Target Start/End: Complemental strand, 28676112 - 28675921
Alignment:
| Q |
440 |
gatatcaagctattgatcaacattgactcagaaattcaggattcactatcgagctttaattttttcaagggaaaggggaaaagttcgagtaaac-ccaca |
538 |
Q |
| |
|
||||||||||||||||| | || ||||| ||||| ||||||||| | ||||||||||| || |||||||| |||||||||||||| |||| ||||| |
|
|
| T |
28676112 |
gatatcaagctattgattggcgttaactcacaaatttaggattcaccacagagctttaattcttccaagggaagggggaaaagttcgaataaaatccaca |
28676013 |
T |
|
| Q |
539 |
atta--taagagatttaaggtccggggattagttacgtaaagagaaggtattacca-cctaaacgtctatagtactctataggaacctcttg |
627 |
Q |
| |
|
|||| ||||||||||||||| ||||| ||||||||||||| |||| ||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28676012 |
attaaataagagatttaaggttcgggggttagttacgtaaaaggaagatattagcatcctaaacgtctatagtactctataggaacctcttg |
28675921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 443 - 628
Target Start/End: Complemental strand, 16566483 - 16566296
Alignment:
| Q |
443 |
atcaagctattgatcaacattgactcagaaattcaggattcactatcgagctttaattttttc-aagggaaaggg-gaaaagttcgagtaaacccacaat |
540 |
Q |
| |
|
||||| |||||||| | | |||||||| ||||| |||||| | ||||||||||||||||| ||||||||||| ||||||||||| |||| | ||||| |
|
|
| T |
16566483 |
atcaacctattgattagcgttgactcacaaatttttaattcaccaccgagctttaattttttccaagggaaagggagaaaagttcgaataaatc-acaat |
16566385 |
T |
|
| Q |
541 |
tataagagatttaaggtccggggattagttacgtaaagagaaggtattaccacc-taaacgtctatagtactctataggaacctcttgc |
628 |
Q |
| |
|
| | ||||||||||||| ||||||||||||| |||||| |||||||||| |||| |||||||||| |||| |||||||||||||||||| |
|
|
| T |
16566384 |
ttttagagatttaaggttcggggattagttaggtaaagggaaggtattagcaccataaacgtctagagtattctataggaacctcttgc |
16566296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 480 - 628
Target Start/End: Complemental strand, 16564616 - 16564465
Alignment:
| Q |
480 |
attcactatcgagctttaattttttc-aagggaaaggggaaaa-gttcgagtaaacccacaattataagagatttaaggtccggggattagttacgtaaa |
577 |
Q |
| |
|
|||||| | ||||||||||||||||| |||||||||||||||| |||||| ||||||||||||| | ||||||||||||| |||| ||||||||||||| |
|
|
| T |
16564616 |
attcaccaccgagctttaattttttccaagggaaaggggaaaaagttcgaataaacccacaattgttagagatttaaggtttgggggttagttacgtaaa |
16564517 |
T |
|
| Q |
578 |
gagaaggtattacca-cctaaacgtctatagtactctataggaacctcttgc |
628 |
Q |
| |
|
| ||||| |||| || ||||||||||||| || ||||||||||||| |||| |
|
|
| T |
16564516 |
gggaagggattagcatcctaaacgtctatgatattctataggaacctattgc |
16564465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 490 - 628
Target Start/End: Complemental strand, 19071901 - 19071761
Alignment:
| Q |
490 |
gagctttaatttttt-caagggaaaggggaaaagttcgagtaaacccacaattataagagatttaaggtccggggattagttacgtaaagagaaggtatt |
588 |
Q |
| |
|
||||||| ||||||| ||||| |||||||||||||| || ||||||| | | ||||||||| ||||| ||||| || |||||| |||| ||||||||| |
|
|
| T |
19071901 |
gagcttttattttttacaaggaaaaggggaaaagtttgaataaaccctatactttaagagattaaaggttcgggggttggttacgcaaagggaaggtatt |
19071802 |
T |
|
| Q |
589 |
a-ccacctaaacgtctatagtactctataggaacctcttgc |
628 |
Q |
| |
|
| || |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19071801 |
agccccctaaacgtctatagtactctataggaaccccttgc |
19071761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 439 - 617
Target Start/End: Complemental strand, 15397070 - 15396887
Alignment:
| Q |
439 |
ggatatcaagctattgatcaacattgactcagaaattcaggattcactatcgagctttaattttttcaagggaaaggggaaaagttcgagt-aaacccac |
537 |
Q |
| |
|
|||||||||||||||| | | |||||||||| ||| | ||||||||| | ||| ||||||||||||||| ||| | |||||||||| | |||||||| |
|
|
| T |
15397070 |
ggatatcaagctattgcttagcattgactcacaaaattaggattcaccaccgacgtttaattttttcaagagaagagaaaaaagttcgaataaaacccac |
15396971 |
T |
|
| Q |
538 |
aatt---ataagagatttaaggtccggggattagttacgtaaagagaaggtattacca-cctaaacgtctatagtactctatag |
617 |
Q |
| |
|
| || |||||||||||||||| ||||| |||||| ||| ||| || |||| | || ||||||||||||||||||||||||| |
|
|
| T |
15396970 |
atttaaaataagagatttaaggttcgggggttagttgcgtgaaggaaatgtatcagcaccctaaacgtctatagtactctatag |
15396887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 568 - 628
Target Start/End: Complemental strand, 27586886 - 27586825
Alignment:
| Q |
568 |
gttacgtaaagagaaggtattaccacc-taaacgtctatagtactctataggaacctcttgc |
628 |
Q |
| |
|
|||||| |||| |||||| ||| |||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
27586886 |
gttacgcaaagggaaggtgttagcaccctaaatgtctatagtactctataggaacctcttgc |
27586825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 439 - 521
Target Start/End: Complemental strand, 28702537 - 28702456
Alignment:
| Q |
439 |
ggatatcaagctattgatcaacattgactcagaaattcaggattcactatcgagctttaattttttcaagggaaaggggaaaa |
521 |
Q |
| |
|
|||||||||||||||||| | | || ||||| ||||| ||||||||| | ||||||||||| || |||||| |||||||||| |
|
|
| T |
28702537 |
ggatatcaagctattgattagcgttaactcacaaatttaggattcaccactgagctttaattcttccaaggg-aaggggaaaa |
28702456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 749 - 786
Target Start/End: Complemental strand, 25527451 - 25527414
Alignment:
| Q |
749 |
cccatgagggatcaaaaccacgtagttcggtgtaaaaa |
786 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
25527451 |
cccatgagggatcaaaacctcgtagttcggggtaaaaa |
25527414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 490 - 598
Target Start/End: Complemental strand, 38384847 - 38384738
Alignment:
| Q |
490 |
gagctttaatttttt-caagggaaaggggaaaagttcgagtaaacccacaattataagagatttaaggtccggggattagttacgtaaagagaaggtatt |
588 |
Q |
| |
|
||||||||||||||| ||||| |||||| ||||| | || ||||||| |||| ||||||| | || || | ||| |||||||||| ||| ||| ||||| |
|
|
| T |
38384847 |
gagctttaatttttttcaaggaaaagggaaaaagatggaataaaccctaaattttaagagaataaaagttcaggggttagttacgttaagggaatgtatt |
38384748 |
T |
|
| Q |
589 |
accacctaaa |
598 |
Q |
| |
|
| |||||||| |
|
|
| T |
38384747 |
agcacctaaa |
38384738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0193 (Bit Score: 77; Significance: 3e-35; HSPs: 1)
Name: scaffold0193
Description:
Target: scaffold0193; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 443 - 628
Target Start/End: Complemental strand, 18501 - 18314
Alignment:
| Q |
443 |
atcaagctattgatcaacattgactcagaaattcaggattcactatcgagctttaattttttcaa-gggaaaggggaaaa-gttcgagtaaacccacaat |
540 |
Q |
| |
|
|||||||||||||| | | |||||| | ||||| ||| ||||| | ||||||||||||||||||| ||||| |||||||| |||||| |||||||||||| |
|
|
| T |
18501 |
atcaagctattgattagcgttgactgacaaatttagg-ttcaccaccgagctttaattttttcaaagggaatggggaaaaagttcgaataaacccacaat |
18403 |
T |
|
| Q |
541 |
tataagagatttaaggtccggggattagttacgtaaagagaaggtattacca-cctaaacgtctatagtactctataggaacctcttgc |
628 |
Q |
| |
|
| | ||||||||||||| || || |||||||||||| |||||||||| || ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
18402 |
ttttagagatttaaggttcgagggttagttacgtaagtggaaggtattagcaccctaaacatctatagtactctataggaacctcttgc |
18314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 7e-33; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 443 - 628
Target Start/End: Original strand, 45026266 - 45026456
Alignment:
| Q |
443 |
atcaagctattgatcaacattgactcagaaattcaggattcactatcgagctttaatttttt---caagggaaagggg-aaaagttcgagtaaacccaca |
538 |
Q |
| |
|
|||||||||||||| | |||||||||| ||||| | ||||||| |||||||||||||||| ||||||||||||| |||||||||| |||||||||| |
|
|
| T |
45026266 |
atcaagctattgattagcattgactcacaaatttatgattcaccgccgagctttaatttttttttcaagggaaagggggaaaagttcgaataaacccaca |
45026365 |
T |
|
| Q |
539 |
attataagagatttaaggtccggggattagttacgtaaagagaaggtattacca-cctaaacgtctatagtactctataggaacctcttgc |
628 |
Q |
| |
|
||| | ||||||||||| | ||||| ||||||||||||| ||| ||||| || |||||||||||||| || | |||||||||||||||| |
|
|
| T |
45026366 |
atttttagagatttaagtttcgggggttagttacgtaaatggaatatattagcaccctaaacgtctataatattttataggaacctcttgc |
45026456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 443 - 563
Target Start/End: Complemental strand, 20472368 - 20472247
Alignment:
| Q |
443 |
atcaagctattgatcaacattgactcagaaattcaggattcactatcgagctttaattttttcaagggaaaggggaaaagttcgagtaaa-cccacaatt |
541 |
Q |
| |
|
|||||| ||||||| | | |||||||| ||||| ||||||||| |||||| |||||||||| ||||| || || |||||||||| |||| ||||||||| |
|
|
| T |
20472368 |
atcaagttattgattagcgttgactcacaaatttaggattcaccatcgagttttaatttttccaaggaaagaggaaaaagttcgaataaaacccacaatt |
20472269 |
T |
|
| Q |
542 |
ataagagatttaaggtccgggg |
563 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
20472268 |
ataagagatttaaggttcgggg |
20472247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 536 - 628
Target Start/End: Complemental strand, 17881432 - 17881339
Alignment:
| Q |
536 |
acaattataagagatttaaggtccggggattagttacgtaaagagaaggtattaccacc-taaacgtctatagtactctataggaacctcttgc |
628 |
Q |
| |
|
|||||| | ||||||||||||| | | | |||||||||||| | |||||||||| |||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
17881432 |
acaatttttagagatttaaggttcagaggttagttacgtaacgggaaggtattagcaccctaaacgtctatagtattctataggaacctcttgc |
17881339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 489 - 628
Target Start/End: Original strand, 32129424 - 32129564
Alignment:
| Q |
489 |
cgagctttaattttttc-aagggaaaggggaaaagttcgagtaaacccacaattataagagatttaaggtccggggattagttacgtaaagagaaggtat |
587 |
Q |
| |
|
|||||||| |||||||| |||| ||| |||||||| |||| ||||||| ||| | ||||||| ||||||||||| || | |||||||| |||||||| |
|
|
| T |
32129424 |
cgagcttttattttttccaaggaaaatgggaaaagatcgaataaaccctatatttttagagattaaaggtccgggg-ttggatacgtaaaaggaaggtat |
32129522 |
T |
|
| Q |
588 |
taccacct-aaacgtctatagtactctataggaacctcttgc |
628 |
Q |
| |
|
|| |||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
32129523 |
tagcaccccaaacgtctatagtactctataagaacctcttgc |
32129564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 439 - 627
Target Start/End: Original strand, 18983461 - 18983649
Alignment:
| Q |
439 |
ggatatcaagctattgatcaacattgactcagaaattcaggattcactatcgagctttaattttttcaagggaaaggggaaaagttcgagtaaacccaca |
538 |
Q |
| |
|
|||||||||||||||| | | | |||||||| ||||| | || |||| | | ||||||||||| |||||||||||||| ||||| || |||||| | |
|
|
| T |
18983461 |
ggatatcaagctattggttagcgttgactcacaaatttatgactcaccacggttctttaatttttccaagggaaaggggagaagtttgaaaaaaccc-ta |
18983559 |
T |
|
| Q |
539 |
attataagagatttaaggtccggggattagttacgtaaagagaaggtattacca-cctaaacgtctatagtactctataggaacctcttg |
627 |
Q |
| |
|
|| |||||||| ||||||||||| || ||||| | ||| ||||||||| || ||||| ||||||||||| |||||||||||||||| |
|
|
| T |
18983560 |
tttttaagagatcaaaggtccggggtttggttacattaaggaaaggtattagcaccctaagcgtctatagtatcctataggaacctcttg |
18983649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 489 - 627
Target Start/End: Complemental strand, 23174506 - 23174366
Alignment:
| Q |
489 |
cgagctttaattttttcaagggaa-aggggaaaagttcgagtaaacccacaattataagagatttaaggtccggggattagttacgtaaagagaaggtat |
587 |
Q |
| |
|
|||||||| |||||||| | |||| || ||||||||| || ||||||| ||| | ||||| | ||||| ||||| || ||||||| ||| |||||||| |
|
|
| T |
23174506 |
cgagcttttattttttccaaggaagagaggaaaagttagaataaaccctatattttgagagaataaaggttcgggggttggttacgttaagggaaggtat |
23174407 |
T |
|
| Q |
588 |
tacca-cctaaacgtctatagtactctataggaacctcttg |
627 |
Q |
| |
|
|| | |||||| |||||||||||| ||||||||||||||| |
|
|
| T |
23174406 |
taggatcctaaatgtctatagtactttataggaacctcttg |
23174366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 489 - 627
Target Start/End: Complemental strand, 23585763 - 23585623
Alignment:
| Q |
489 |
cgagctttaattttttcaagggaa-aggggaaaagttcgagtaaacccacaattataagagatttaaggtccggggattagttacgtaaagagaaggtat |
587 |
Q |
| |
|
|||||||| |||||||| | |||| || ||||||||| || ||||||| ||| | ||||| | ||||| ||||| || ||||||| ||| |||||||| |
|
|
| T |
23585763 |
cgagcttttattttttccaaggaagagaggaaaagttagaataaaccctatattttgagagaataaaggttcgggggttggttacgttaagggaaggtat |
23585664 |
T |
|
| Q |
588 |
tacca-cctaaacgtctatagtactctataggaacctcttg |
627 |
Q |
| |
|
|| | |||||| |||||||||||| ||||||||||||||| |
|
|
| T |
23585663 |
taggatcctaaatgtctatagtactttataggaacctcttg |
23585623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 753 - 794
Target Start/End: Original strand, 45026587 - 45026628
Alignment:
| Q |
753 |
tgagggatcaaaaccacgtagttcggtgtaaaaagccgagtg |
794 |
Q |
| |
|
||||||||||||||||| || ||||| ||||||||||||||| |
|
|
| T |
45026587 |
tgagggatcaaaaccacttaattcggggtaaaaagccgagtg |
45026628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 3e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 443 - 623
Target Start/End: Original strand, 12612672 - 12612854
Alignment:
| Q |
443 |
atcaagctattgatcaacattgactcagaaattcaggattcactatcgagctttaatttttt-caagggaaa-ggggaaaagttcgagtaaacccacaat |
540 |
Q |
| |
|
|||||||||||||| | | |||||||| ||||| ||| ||||| | | |||||||||||||| ||||||||| |||||||||||||| |||||||||| | |
|
|
| T |
12612672 |
atcaagctattgattagcgttgactcacaaatttagg-ttcaccaccaagctttaatttttttcaagggaaatggggaaaagttcgaataaacccacact |
12612770 |
T |
|
| Q |
541 |
tataagagatttaaggtccggggattagttacgtaaagagaaggtattacca-cctaaacgtctatagtactctataggaacct |
623 |
Q |
| |
|
| | |||||||||| || ||||| |||||||||||||| ||| ||||| || ||||||||||||||||| ||||||||||||| |
|
|
| T |
12612771 |
ttttagagatttaaagttcgggggttagttacgtaaagggaaaatattaacaccctaaacgtctatagtattctataggaacct |
12612854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 568 - 628
Target Start/End: Original strand, 20355851 - 20355912
Alignment:
| Q |
568 |
gttacgtaaagagaaggtattaccacc-taaacgtctatagtactctataggaacctcttgc |
628 |
Q |
| |
|
||||| ||||| |||||| ||| |||| ||||||||||||||| ||||||| |||||||||| |
|
|
| T |
20355851 |
gttacctaaagggaaggttttaacaccataaacgtctatagtattctatagaaacctcttgc |
20355912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2020 (Bit Score: 67; Significance: 3e-29; HSPs: 1)
Name: scaffold2020
Description:
Target: scaffold2020; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 439 - 627
Target Start/End: Original strand, 584 - 772
Alignment:
| Q |
439 |
ggatatcaagctattgatcaacattgactcagaaattcaggattcactatcgagctttaa-ttttttcaagggaaaggggaaaagttcgagtaaacccac |
537 |
Q |
| |
|
|||||||||||||||||| | ||||||||| ||||| |||||| | |||||||||| |||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
584 |
ggatatcaagctattgattagtattgactcacaaattttt-attcaccagcgagctttaatttttttcaaggg-aaggggaaaagttcgaataaacccac |
681 |
T |
|
| Q |
538 |
aattataagagatttaaggtccggggattagttacgtaaagagaaggtattacca-cctaaacgtctatagtactctataggaacctcttg |
627 |
Q |
| |
|
| || |||||||||||||| ||| | || ||||||| ||| |||||| ||| || |||||||||||||| || ||||||||||||||||| |
|
|
| T |
682 |
attttaaagagatttaaggttcggaggttggttacgtgaagggaaggtgttagcaccctaaacgtctatattattctataggaacctcttg |
772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 67; Significance: 3e-29; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 439 - 627
Target Start/End: Complemental strand, 164911 - 164723
Alignment:
| Q |
439 |
ggatatcaagctattgatcaacattgactcagaaattcaggattcactatcgagctttaatttttt-caagggaaaggggaaaagttcgagtaaacccac |
537 |
Q |
| |
|
|||||||||||||||||| | ||||||||| ||||| |||||| | |||||||||||||||| |||||||| |||||||||||||| ||||||||| |
|
|
| T |
164911 |
ggatatcaagctattgattagtattgactcacaaattttt-attcaccagcgagctttaatttttttcaagggaa-ggggaaaagttcgaataaacccac |
164814 |
T |
|
| Q |
538 |
aattataagagatttaaggtccggggattagttacgtaaagagaaggtattacca-cctaaacgtctatagtactctataggaacctcttg |
627 |
Q |
| |
|
| || |||||||||||||| ||| | || ||||||| ||| |||||| ||| || |||||||||||||| || ||||||||||||||||| |
|
|
| T |
164813 |
attttaaagagatttaaggttcggaggttggttacgtgaagggaaggtgttagcaccctaaacgtctatattattctataggaacctcttg |
164723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 480 - 594
Target Start/End: Complemental strand, 149691 - 149575
Alignment:
| Q |
480 |
attcactatcgagctttaattttttc-aagggaaagggg-aaaagttcgagtaaacccacaattataagagatttaaggtccggggattagttacgtaaa |
577 |
Q |
| |
|
|||||| | ||||||||||||||||| |||||||||||| ||||||| || |||||||||| || |||||||||||||| ||||| || | ||||| || |
|
|
| T |
149691 |
attcaccaccgagctttaattttttccaagggaaagggggaaaagtttgaataaacccacattttaaagagatttaaggttcggggtttggatacgtgaa |
149592 |
T |
|
| Q |
578 |
gagaaggtattaccacc |
594 |
Q |
| |
|
| |||||| ||| |||| |
|
|
| T |
149591 |
gggaaggtgttagcacc |
149575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0226 (Bit Score: 56; Significance: 1e-22; HSPs: 2)
Name: scaffold0226
Description:
Target: scaffold0226; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 480 - 628
Target Start/End: Complemental strand, 6749 - 6598
Alignment:
| Q |
480 |
attcactatcgagctttaattttttc-aagggaaagggg-aaaagttcgagtaaacccacaattataagagatttaaggtccggggattagttacgtaaa |
577 |
Q |
| |
|
|||||| | ||||||||||||||||| || ||||||||| |||| |||| |||||||| |||| | ||||||||||||| ||||| |||||||||| || |
|
|
| T |
6749 |
attcaccaccgagctttaattttttccaatggaaaggggtaaaaattcggataaacccataattttgagagatttaaggttcgggggttagttacgtcaa |
6650 |
T |
|
| Q |
578 |
gagaaggtattaccac-ctaaacgtctatagtactctataggaacctcttgc |
628 |
Q |
| |
|
| |||||||||| || ||||| |||||||||| |||| ||||||||||||| |
|
|
| T |
6649 |
gggaaggtattagtactctaaatgtctatagtattctaaaggaacctcttgc |
6598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0226; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 749 - 794
Target Start/End: Complemental strand, 6470 - 6425
Alignment:
| Q |
749 |
cccatgagggatcaaaaccacgtagttcggtgtaaaaagccgagtg |
794 |
Q |
| |
|
||||||||||| |||||||||||| ||||| ||||||||| ||||| |
|
|
| T |
6470 |
cccatgagggagcaaaaccacgtacttcggggtaaaaagctgagtg |
6425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 6e-21; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 490 - 628
Target Start/End: Complemental strand, 17809591 - 17809451
Alignment:
| Q |
490 |
gagctttaattttttc-aagggaaaggggaaaagttcgagtaaacccacaattataagagatttaaggtccggggattagttacgtaaagagaaggtatt |
588 |
Q |
| |
|
||||||| |||||||| |||| |||||||||||| |||| ||||||| | || ||||||||| ||||| ||| || |||||| |||| ||| ||||| |
|
|
| T |
17809591 |
gagcttttattttttccaaggaaaaggggaaaagatcgaataaaccctaatttttaagagattaaaggttcggaagttggttacgcaaagggaatgtatt |
17809492 |
T |
|
| Q |
589 |
accacct-aaacgtctatagtactctataggaacctcttgc |
628 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
17809491 |
agcaccttaaacgtctatagtactctataggaacctcttgc |
17809451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 489 - 628
Target Start/End: Original strand, 24710016 - 24710157
Alignment:
| Q |
489 |
cgagctttaattttttc-aagggaaaggggaaaagttcgagtaaacccacaattataagagatttaaggtccggggattagttacgtaaagagaaggtat |
587 |
Q |
| |
|
|||||||| |||||||| |||| ||||||||||||||||| ||||||| ||| | ||||||| ||||| ||| || ||||||||||| |||||||| |
|
|
| T |
24710016 |
cgagcttttattttttccaaggaaaaggggaaaagttcgaataaaccctatatttttagagattaaaggttcggtagttggttacgtaaagggaaggtat |
24710115 |
T |
|
| Q |
588 |
taccacc-taaacgtctatagtactctataggaacctcttgc |
628 |
Q |
| |
|
| ||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
24710116 |
caagaccctaaacgtctatagcactctataggaacctcttgc |
24710157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 749 - 786
Target Start/End: Original strand, 22155795 - 22155832
Alignment:
| Q |
749 |
cccatgagggatcaaaaccacgtagttcggtgtaaaaa |
786 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
22155795 |
cccatgagggatcaaaacctcgtagttcggggtaaaaa |
22155832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 749 - 786
Target Start/End: Original strand, 22161803 - 22161840
Alignment:
| Q |
749 |
cccatgagggatcaaaaccacgtagttcggtgtaaaaa |
786 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
22161803 |
cccatgagggatcaaaacctcgtagttcggggtaaaaa |
22161840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 494 - 628
Target Start/End: Original strand, 20742487 - 20742622
Alignment:
| Q |
494 |
tttaattttttcaagggaaaggggaaaagttcgagtaaacccacaattataagagatttaaggtccggggattagttacgtaaagagaaggtattacca- |
592 |
Q |
| |
|
|||||||||||||| | |||||||||||| |||| ||||||| ||| | ||||||| || || ||||| ||| ||||||||| |||| ||||| || |
|
|
| T |
20742487 |
tttaattttttcaaagaaaaggggaaaagatcgaataaaccctatatttttagagattaaaagttcggggtttaattacgtaaaaggaagatattagcaa |
20742586 |
T |
|
| Q |
593 |
cctaaacgtctatagtactctataggaacctcttgc |
628 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |
|
|
| T |
20742587 |
cctagacgtctatagtactctataggaacctcttgc |
20742622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 489 - 627
Target Start/End: Original strand, 10708714 - 10708852
Alignment:
| Q |
489 |
cgagctttaattttttcaagggaaaggggaaaagttcgagtaaacccacaattataagagatttaaggtccggggattagttacgtaaagagaaggtatt |
588 |
Q |
| |
|
|||||||| |||||| |||| |||| | |||||||||| ||| || | || | |||||||| ||||| ||||| || |||||| ||||||||||||| |
|
|
| T |
10708714 |
cgagcttttatttttctaaggaaaagagaaaaagttcgaataaccctaaaaat-taagagatcaaaggttcgggggttgcttacgttaagagaaggtatt |
10708812 |
T |
|
| Q |
589 |
accacct-aaacgtctatagtactctataggaacctcttg |
627 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10708813 |
aacaccttaaacgtctatagtactctataggaacctcttg |
10708852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 569 - 628
Target Start/End: Complemental strand, 15749430 - 15749370
Alignment:
| Q |
569 |
ttacgtaaagagaaggtattaccacc-taaacgtctatagtactctataggaacctcttgc |
628 |
Q |
| |
|
|||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
15749430 |
ttacgtaaagggaaggtattagcaccctaaacgtctatagtactctataggaacctcttgc |
15749370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 494 - 625
Target Start/End: Original strand, 20734950 - 20735082
Alignment:
| Q |
494 |
tttaattttttcaagggaaaggggaaaagttcgagtaaacccacaattataagagatttaaggtccggggattagttacgtaaagagaaggtattacca- |
592 |
Q |
| |
|
|||| ||||| ||| | |||||||||||| |||| ||||||| ||| | ||||| ||||| |||| ||||||||||||| |||||||| | || |
|
|
| T |
20734950 |
tttattttttccaaagaaaaggggaaaagatcgaataaaccctatatttttgaagattaaaggtttggggcttagttacgtaaaaggaaggtatcagcaa |
20735049 |
T |
|
| Q |
593 |
cctaaacgtctatagtactctataggaacctct |
625 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
20735050 |
cctagacgtctatagtactctataggaacctct |
20735082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 756 - 794
Target Start/End: Original strand, 20742756 - 20742794
Alignment:
| Q |
756 |
gggatcaaaaccacgtagttcggtgtaaaaagccgagtg |
794 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
20742756 |
gggatcaaaatcacgtagttcggggtaaaaagccgagtg |
20742794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 749 - 786
Target Start/End: Original strand, 16030147 - 16030184
Alignment:
| Q |
749 |
cccatgagggatcaaaaccacgtagttcggtgtaaaaa |
786 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
16030147 |
cccatgagggatcaaaacctcgtagttcggggtaaaaa |
16030184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 627
Target Start/End: Original strand, 23280834 - 23280919
Alignment:
| Q |
543 |
taagagatttaaggtccggggattagttacgtaaagagaaggtattacca-cctaaacgtctatagtactctataggaacctcttg |
627 |
Q |
| |
|
||||||||||| ||| ||||| |||||||| ||||| |||||| ||| || ||| || ||| |||||||||| |||||||||||| |
|
|
| T |
23280834 |
taagagatttagggttcgggggttagttacataaagggaaggtgttagcacccttaatgtccgtagtactctacaggaacctcttg |
23280919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 627
Target Start/End: Original strand, 23286733 - 23286818
Alignment:
| Q |
543 |
taagagatttaaggtccggggattagttacgtaaagagaaggtattacca-cctaaacgtctatagtactctataggaacctcttg |
627 |
Q |
| |
|
||||||||||| ||| ||||| |||||||| ||||| |||||| ||| || ||| || ||| |||||||||| |||||||||||| |
|
|
| T |
23286733 |
taagagatttagggttcgggggttagttacataaagggaaggtgttagcacccttaatgtccgtagtactctacaggaacctcttg |
23286818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0063 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0063
Description:
Target: scaffold0063; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 481 - 628
Target Start/End: Complemental strand, 32852 - 32701
Alignment:
| Q |
481 |
ttcactatcgagctttaattttttc-aagggaaaggggaaaagttcgagtaaacccacaattataagagatttaaggtccggggattagttacgtaaaga |
579 |
Q |
| |
|
||||| |||||||||| |||||||| |||| |||||||||||| |||| ||||||| ||| ||||||||| | ||| | || ||||||||| ||| |
|
|
| T |
32852 |
ttcaccatcgagcttttattttttccaaggaaaaggggaaaagatcgaataaaccctatattttaagagattaatggtttgagggttagttacgcaaatg |
32753 |
T |
|
| Q |
580 |
gaaggtattaccacc---taaacgtctatagtactctataggaacctcttgc |
628 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||| ||||| |||||||||| |
|
|
| T |
32752 |
gaaggtattagcacaccgtaaacgtctatagtactatatagaaacctcttgc |
32701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 489 - 627
Target Start/End: Complemental strand, 11586937 - 11586796
Alignment:
| Q |
489 |
cgagctttaattttttc-aagggaaagggg-aaaagttcgagtaaacccacaattataagagatttaaggtccggggattagttacgtaaagagaaggta |
586 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||| ||| |||| || ||| |||||| |||| ||||| |||||||||||||| |||| | |
|
|
| T |
11586937 |
cgagctttaattttttccaagggaaagggggaaaagttcgaaataactcacatttttaaaagattttaggttcgggggttagttacgtaaagggaagatg |
11586838 |
T |
|
| Q |
587 |
ttacca-cctaaacgtctatagtactctataggaacctcttg |
627 |
Q |
| |
|
||| || |||||| | |||||||| ||||| |||||||||| |
|
|
| T |
11586837 |
ttagcaccctaaatgcctatagtatcctatatgaacctcttg |
11586796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 462 - 627
Target Start/End: Original strand, 14483591 - 14483757
Alignment:
| Q |
462 |
ttgactcagaaattcaggattcactatcgagctttaattttttc-aagggaaagggg-aaaagttcgagtaaacccacaattataagagatttaaggtcc |
559 |
Q |
| |
|
|||||||| ||||| ||| ||||| | | ||||||||| ||||| |||||||||||| |||||||||| ||| ||||||||| | | ||||||||||| | |
|
|
| T |
14483591 |
ttgactcataaatttagg-ttcaccacctagctttaatattttccaagggaaagggggaaaagttcgaataa-cccacaatttttaaagatttaaggttc |
14483688 |
T |
|
| Q |
560 |
ggggattagttacgtaaagagaaggtattacca-cctaaacgtctatagtactctataggaacctcttg |
627 |
Q |
| |
|
|||| |||||||||| ||| || |||||| || ||||||||||| ||| | || |||| ||||||||| |
|
|
| T |
14483689 |
gggggttagttacgttaaggaaaagtattagcaccctaaacgtctgtaggattccatagaaacctcttg |
14483757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 439 - 623
Target Start/End: Original strand, 15646455 - 15646644
Alignment:
| Q |
439 |
ggatatcaagctattgatcaacattgactcagaaattcaggattcactatcgagctttaattttttcaagggaaaggggaaaagttc----gagtaaacc |
534 |
Q |
| |
|
|||||||||||||||| | | | |||||||| ||||| |||| |||| | ||| |||| |||||| |||||||||||||| || ||| || ||| | |
|
|
| T |
15646455 |
ggatatcaagctattggttagcgttgactcacaaatttaggactcaccaccgatcttttatttttccaagggaaaggggagaaattcaaaggaaaaaaac |
15646554 |
T |
|
| Q |
535 |
cacaattataagagatttaaggtccggggattagttacgtaaagagaaggtattacca-cctaaacgtctatagtactctataggaacct |
623 |
Q |
| |
|
| | || |||||||| || |||| ||| || ||||||| ||| |||||||||| || ||||||||||| ||||| |||||||||||| |
|
|
| T |
15646555 |
cctatttttaagagatcaaatgtccagggtttggttacgttaagggaaggtattagcaccctaaacgtctgtagtatcctataggaacct |
15646644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 546 - 627
Target Start/End: Original strand, 5269033 - 5269115
Alignment:
| Q |
546 |
gagatttaaggtccggggattagttacgtaaagagaaggtatta-ccacctaaacgtctatagtactctataggaacctcttg |
627 |
Q |
| |
|
|||||| ||||| | ||| || ||||||| ||| |||||| ||| || |||||||||||||| || ||||||||||||||||| |
|
|
| T |
5269033 |
gagattaaaggttcaggggttggttacgttaagggaaggtgttagcctcctaaacgtctataatattctataggaacctcttg |
5269115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 753 - 786
Target Start/End: Complemental strand, 2890396 - 2890363
Alignment:
| Q |
753 |
tgagggatcaaaaccacgtagttcggtgtaaaaa |
786 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |
|
|
| T |
2890396 |
tgagggatcaaaacctcgtagttcggtgtaaaaa |
2890363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 489 - 536
Target Start/End: Original strand, 13541767 - 13541816
Alignment:
| Q |
489 |
cgagctttaatttt-ttcaagggaaa-ggggaaaagttcgagtaaaccca |
536 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||| |||||||| |
|
|
| T |
13541767 |
cgagctttaatttttttcaagggaaagggggaaaagttcgaataaaccca |
13541816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0058 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0058
Description:
Target: scaffold0058; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 480 - 627
Target Start/End: Original strand, 68547 - 68695
Alignment:
| Q |
480 |
attcactatcgagctttaattttttcaagggaaaggggaaaagttcgagtaaacccacaattataaga-gatttaaggtccggggattagttacgtaaag |
578 |
Q |
| |
|
|||||| | ||| ||||||||||| ||| ||||||||| |||||| || ||||||| ||| | ||| ||||| ||| |||| ||||||||||||||| |
|
|
| T |
68547 |
attcaccaacgaactttaatttttccaatggaaagggggaaagtttgaaataacccactatttttagaagatttt-ggttcgggaattagttacgtaaag |
68645 |
T |
|
| Q |
579 |
agaaggtattacca-cctaaacgtctatagtactctataggaacctcttg |
627 |
Q |
| |
|
|||||| ||| || ||||||||||| ||||| ||| |||||||||||| |
|
|
| T |
68646 |
ggaaggtgttagcaccctaaacgtctgtagtatcctacaggaacctcttg |
68695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0555 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0555
Description:
Target: scaffold0555; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 547 - 626
Target Start/End: Original strand, 3866 - 3946
Alignment:
| Q |
547 |
agatttaaggtccggggattagttacgtaaagagaaggtattaccacc-taaacgtctatagtactctataggaacctctt |
626 |
Q |
| |
|
|||||| |||| ||||| |||||||| | ||| |||||| ||| |||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
3866 |
agattttaggttcgggggttagttacatgaagggaaggtgttaacaccctaaacacctatagtactctataggaacctctt |
3946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 547 - 627
Target Start/End: Original strand, 26906 - 26987
Alignment:
| Q |
547 |
agatttaaggtccggggattagttacgtaaagagaaggtattaccacc-taaacgtctatagtactctataggaacctcttg |
627 |
Q |
| |
|
||||||| ||| ||||| |||||||| ||||| |||||||||| |||| | ||||| ||||||||||| ||||||||||| |
|
|
| T |
26906 |
agatttagggttcgggggttagttacataaagggaaggtattagcaccctttacgtccatagtactctacgggaacctcttg |
26987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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