View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13181_high_13 (Length: 483)
Name: NF13181_high_13
Description: NF13181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13181_high_13 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 13 - 483
Target Start/End: Original strand, 4670559 - 4671034
Alignment:
| Q |
13 |
aatatctttagactgctctaattcataaccatgtcataatgttcttcaatgccctcaaatttcatgcttagttaacatttatagaacacttcccatccag |
112 |
Q |
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| T |
4670559 |
aatatctttagactgctctaattcataaccatgtcataatcttcttcgatgccctcaaatttcatgcttagttaacatttatagaacacttcccatccag |
4670658 |
T |
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| Q |
113 |
cagaaacaatattaatcttaccacggtctatttaaccctacacgaccaacaatcgtctgtgaggtaagcttccatgcacata------aaccttcacaag |
206 |
Q |
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| T |
4670659 |
cagaaa-aatattaatcttaccacggtctttttaaccctacacgaccaacaatcgtctgtgaggtaagcttccatgcacatatgtgcaaaccttcacaag |
4670757 |
T |
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| Q |
207 |
caaccttcaaggtttgaagatcaactttaaaatggttgtcgacctttgagaccgaagtccaaaaaacacttttgtcatnnnnnnncaaggtttaggttca |
306 |
Q |
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| T |
4670758 |
caaccttcaaggtttgaagatcaactttaaaatggttgtcgacctttgagactgaagtccaaaaaacacttttgtcataaaaaaacaaggtttaggttca |
4670857 |
T |
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| Q |
307 |
taactcttatccacaccacagttttgtcgatctttgtcgtagacgcgttgttagtaccactctatcatctatgcataggatggaggaagacacaagtctc |
406 |
Q |
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| T |
4670858 |
taactcttatccacaccacagttttgtcgatctttgtcgtagacgcgttgttagtaccactctatcatctatgcataggatggaggaagacacaagtctc |
4670957 |
T |
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| Q |
407 |
atttagatcaaataaaaggcagctaagctacctcttccctgtggctagcattgttctgttcgtgttcacatggacat |
483 |
Q |
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| T |
4670958 |
atttagatcaaataaaaggcagctaagctacctcttccctgtggctagcattgttctgttcgtgttcacattgacat |
4671034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 262 - 464
Target Start/End: Original strand, 4670114 - 4670316
Alignment:
| Q |
262 |
agtccaaaaaacacttttgtcatnnnnnnncaaggtttaggttcataactcttatccacaccacagttttgtcgatctttgtcgtagacgcgttgttagt |
361 |
Q |
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|||||| ||||||||||||||| |||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||| | |||||| |
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| T |
4670114 |
agtccacaaaacacttttgtcacaaaaaaacaaggtttaggttcataattcttatcaacactacagttttgtcgatctttgtcgtagacgcatcgttagt |
4670213 |
T |
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| Q |
362 |
accactctatcatctatgcataggatggaggaagacacaagtctcatttagatcaaataaaaggcagctaagctacctcttccctgtggctagcattgtt |
461 |
Q |
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| T |
4670214 |
acgactctatcatctatgcataggaaggaggaagacacaagtctcatttagatcaaataaaaggctgctaagctacttctcccctgtggctagcattgct |
4670313 |
T |
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| Q |
462 |
ctg |
464 |
Q |
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||| |
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| T |
4670314 |
ctg |
4670316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 46 - 125
Target Start/End: Original strand, 4671290 - 4671371
Alignment:
| Q |
46 |
tcataatgttcttcaatgccctcaaatttcatgcttagttaacatttatag---aacacttcccatccagcagaaacaatatt |
125 |
Q |
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| T |
4671290 |
tcataatgttcctcattgcccttaa-tttcatgcttagttaacatttatagtagaacacttcccatccagcagaaaaaatatt |
4671371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 233
Target Start/End: Original strand, 4670065 - 4670104
Alignment:
| Q |
194 |
aaaccttcacaagcaaccttcaaggtttgaagatcaactt |
233 |
Q |
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| T |
4670065 |
aaaccttcacaagccacattcaaggtttgaagatcaactt |
4670104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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