View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13181_high_18 (Length: 392)

Name: NF13181_high_18
Description: NF13181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13181_high_18
NF13181_high_18
[»] chr4 (4 HSPs)
chr4 (121-373)||(55203196-55203449)
chr4 (8-191)||(55205731-55205915)
chr4 (167-223)||(10032286-10032342)
chr4 (173-223)||(1856676-1856726)
[»] chr7 (6 HSPs)
chr7 (8-194)||(46513396-46513583)
chr7 (8-219)||(46164460-46164675)
chr7 (8-81)||(10091686-10091757)
chr7 (285-353)||(46466492-46466560)
chr7 (170-219)||(46169318-46169367)
chr7 (12-81)||(26339860-26339928)
[»] chr1 (4 HSPs)
chr1 (8-219)||(48986045-48986260)
chr1 (115-219)||(48990848-48990953)
chr1 (170-215)||(25491998-25492043)
chr1 (170-223)||(52433030-52433083)
[»] chr3 (2 HSPs)
chr3 (165-200)||(34374786-34374821)
chr3 (165-223)||(34374007-34374065)
[»] scaffold0060 (1 HSPs)
scaffold0060 (170-223)||(11167-11221)
[»] chr2 (2 HSPs)
chr2 (167-223)||(18259213-18259270)
chr2 (8-56)||(10258339-10258387)
[»] chr6 (1 HSPs)
chr6 (167-223)||(6356377-6356433)


Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 121 - 373
Target Start/End: Complemental strand, 55203449 - 55203196
Alignment:
Q  121 gaagcgcgtgtttctcctctattttgttttttaattnnnnnnnctgatgttttgtttatttttaatctgaaccattgaatccctttcttccacatgtcat 220  Q
    ||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55203449 gaagcgcgtgtttctcctctattttgttttttaattaaaaaagctgatgttttgtttatttttaatctgaaccattgaatccctttcttccacatgtcat 55203350  T
Q  221 tcaataaacgaat-cacacggtcgccttctccctgaaataatcctattctgtgaaggtctccgtcgcaatcttcaatcccctaacgaattcatgcccagt 319  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||    
T  55203349 tcaataaacgaattcacacggtcgccttctccctgaaatgatcctattctgtgaaggtctccgtcgcaatattcaatcccctaacgaattcatgcgcggt 55203250  T
Q  320 gtaactctccgttttcttagccgcatcaatgaatacaagatcctcgaacaccat 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55203249 gtaactctccgttttcttagccgcatcaatgaatacaagatcctcgaacaccat 55203196  T

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Target: chr4; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 8 - 191
Target Start/End: Original strand, 55205731 - 55205915
Alignment:
Q  8 tgagatgaacggcggcacaatcggtggttgttggcgctgatgagagggggagacgaagagattctgagggaagcagagagtgagtaaagttcatgtacga 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||    
T  55205731 tgagatgaacggcggcacaatcggtggttgttggcgctgatgagagggggagacgaagagattccgagggaagcagagagtgagtaaagttcacgtaaga 55205830  T
Q  108 gagaagaagaagagaagcgcgtgtttctcctctattttgttttttaatt-nnnnnnnctgatgttttgtttatttttaatctgaa 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  55205831 gagaagaagaagagaagcgcgtgtttctcctctattttgttttttaattaaaaaaaactgatgttttgtttatttttaatctgaa 55205915  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 10032286 - 10032342
Alignment:
Q  167 atgttttgtttatttttaatctgaaccattgaatccctttcttccacatgtcattca 223  Q
    ||||||||||||||||||||||||| |||||||||| ||| |  |||||||||||||    
T  10032286 atgttttgtttatttttaatctgaatcattgaatccttttttgtcacatgtcattca 10032342  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 223
Target Start/End: Original strand, 1856676 - 1856726
Alignment:
Q  173 tgtttatttttaatctgaaccattgaatccctttcttccacatgtcattca 223  Q
    |||||||||| ||||||||||||||||||| ||| | ||||||||||||||    
T  1856676 tgtttattttaaatctgaaccattgaatccttttttgccacatgtcattca 1856726  T

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Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 46513396 - 46513583
Alignment:
Q  8 tgagatgaacggcggcacaatcggtggttgttggcgctgatgagagggggagacgaagagattctgagggaagc---agagagtgagtaaagttcatgta 104  Q
    |||||||||||||| ||||||||| ||||||||| |||| ||||| ||||||||||||||||||||||||||||   | |||| | |||| ||||| |||    
T  46513396 tgagatgaacggcgacacaatcggcggttgttggtgctggtgaga-ggggagacgaagagattctgagggaagctcaaaagagagtgtaacgttcacgta 46513494  T
Q  105 cgag-agaagaagaagagaagcgcgtgtttctcctctattttgttttttaattnnnnnnnctgatgttttgtttatttttaatctgaacca 194  Q
    | || ||||| |||||| ||||||||| |||||||||||||| ||||||||||       |||||||||||||||||||||||||||||||    
T  46513495 ctagaagaag-agaagacaagcgcgtg-ttctcctctatttttttttttaattaaaaaagctgatgttttgtttatttttaatctgaacca 46513583  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 8 - 219
Target Start/End: Complemental strand, 46164675 - 46164460
Alignment:
Q  8 tgagatgaacggcggcacaatcggtggttgttggcgctgatgagagggggagacgaagagattctgagggaagc-----agagagtgagtaaagttcatg 102  Q
    |||||||||||||||||||||||| |||||||||||||||||| |  |||| |||||||| |||| ||||||||     |||||||| | || ||||| |    
T  46164675 tgagatgaacggcggcacaatcggcggttgttggcgctgatgaca--gggaaacgaagaggttctaagggaagctgaaaagagagtgggcaacgttcacg 46164578  T
Q  103 tacgagagaaga--agaagagaagcgcgtgtttctcctctattttgttttttaattnnnnnnnctgatg-ttttgtttatttttaatctgaaccattgaa 199  Q
    || || ||||||  ||||||||||||||||||  | |||| | |   ||||| |||       |||||| ||||||||||||||||||||||||||||||    
T  46164577 tatgaaagaagaagagaagagaagcgcgtgtt--tgctctctctctcttttttattaaaaaaactgatgtttttgtttatttttaatctgaaccattgaa 46164480  T
Q  200 tccctttcttccacatgtca 219  Q
    ||| ||| | ||||||||||    
T  46164479 tccatttttgccacatgtca 46164460  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 10091757 - 10091686
Alignment:
Q  8 tgagatgaacggcggcacaatcggtggttgttggcgctgatgagagggggagacgaagagattctgagggaagc 81  Q
    |||||||||||||||||||||||  ||||||||||||||||||||  |||| |||||||| || ||||||||||    
T  10091757 tgagatgaacggcggcacaatcgacggttgttggcgctgatgaga--gggaaacgaagaggttttgagggaagc 10091686  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 285 - 353
Target Start/End: Original strand, 46466492 - 46466560
Alignment:
Q  285 gcaatcttcaatcccctaacgaattcatgcccagtgtaactctccgttttcttagccgcatcaatgaat 353  Q
    |||||||||||| ||||||||||||||| | |||||| ||||| ||||||||| |||| ||||||||||    
T  46466492 gcaatcttcaatgccctaacgaattcattcgcagtgttactcttcgttttctttgccgtatcaatgaat 46466560  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 46169318 - 46169367
Alignment:
Q  170 ttttgtttatttttaatctgaaccattgaatccctttcttccacatgtca 219  Q
    |||||||||||||||||||||| |||||||||| ||| | ||||||||||    
T  46169318 ttttgtttatttttaatctgaatcattgaatccatttttgccacatgtca 46169367  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 81
Target Start/End: Original strand, 26339860 - 26339928
Alignment:
Q  12 atgaacggcggcacaatcggtggttgttggcgctgatgagagggggagacgaagagattctgagggaagc 81  Q
    ||||||||||| | |||||  | ||||||||| |||||||| ||||||| |||||||||| |||||||||    
T  26339860 atgaacggcggaataatcgacgattgttggcggtgatgaga-ggggagaggaagagattccgagggaagc 26339928  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 8 - 219
Target Start/End: Complemental strand, 48986260 - 48986045
Alignment:
Q  8 tgagatgaacggcggcacaatcggtggttgttggcgctgatgagagggggagacgaagagattctgagggaagc-----agagagtgagtaaagttcatg 102  Q
    |||||||||||||| ||||||||| |||||||||||||||||| |  |||| |||||||| |||| ||||||||     |||||||| |||| ||||| |    
T  48986260 tgagatgaacggcgacacaatcggcggttgttggcgctgatgaca--gggaaacgaagaggttctaagggaagctgaaaagagagtgggtaacgttcacg 48986163  T
Q  103 tacgagagaaga--agaagagaagcgcgtgtttctcctctattttgttttttaattnnnnnnnctgatg-ttttgtttatttttaatctgaaccattgaa 199  Q
    || || ||||||  ||||||||||||||||||  | |||| | |   ||||| |||       |||||| |||||||||||||||||||||| |||||||    
T  48986162 tatgaaagaagaagagaagagaagcgcgtgtt--tgctctctctctcttttttattaaaaaaactgatgtttttgtttatttttaatctgaatcattgaa 48986065  T
Q  200 tccctttcttccacatgtca 219  Q
    ||| ||| | ||||||||||    
T  48986064 tccatttttgccacatgtca 48986045  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 115 - 219
Target Start/End: Original strand, 48990848 - 48990953
Alignment:
Q  115 agaagagaagcgcgtgtttctcctctattttgttttttaattnnnnnnnctgatg-ttttgtttatttttaatctgaaccattgaatccctttcttccac 213  Q
    |||||||||||||||||||   |||| | || ||||||||||       |||||| ||||||||||||||||||||||||||||||||| ||| | ||||    
T  48990848 agaagagaagcgcgtgtttgctctctctctttttttttaattaaaaaaactgatgtttttgtttatttttaatctgaaccattgaatccatttttgccac 48990947  T
Q  214 atgtca 219  Q
    ||||||    
T  48990948 atgtca 48990953  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 25491998 - 25492043
Alignment:
Q  170 ttttgtttatttttaatctgaaccattgaatccctttcttccacat 215  Q
    ||||||||||||||||||||||||||||||||| ||| | ||||||    
T  25491998 ttttgtttatttttaatctgaaccattgaatccatttttgccacat 25492043  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 52433083 - 52433030
Alignment:
Q  170 ttttgtttatttttaatctgaaccattgaatccctttcttccacatgtcattca 223  Q
    ||||||||||||||||||||||||||||||| | ||| | |||| |||||||||    
T  52433083 ttttgtttatttttaatctgaaccattgaattcatttgtgccacgtgtcattca 52433030  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 200
Target Start/End: Original strand, 34374786 - 34374821
Alignment:
Q  165 tgatgttttgtttatttttaatctgaaccattgaat 200  Q
    ||||||||||||||||||||||||||||||||||||    
T  34374786 tgatgttttgtttatttttaatctgaaccattgaat 34374821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 34374065 - 34374007
Alignment:
Q  165 tgatgttttgtttatttttaatctgaaccattgaatccctttcttccacatgtcattca 223  Q
    ||||||||| |||||||||||||| ||||||||||||  ||| | ||||||||||||||    
T  34374065 tgatgttttatttatttttaatctaaaccattgaatcattttttgccacatgtcattca 34374007  T

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Target: scaffold0060 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 11221 - 11167
Alignment:
Q  170 ttttgtttatttttaatctgaaccattgaatccctttctt-ccacatgtcattca 223  Q
    ||||| ||||||||||||||||||||||||||| ||| || ||||||||||||||    
T  11221 ttttgattatttttaatctgaaccattgaatcctttttttaccacatgtcattca 11167  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 18259213 - 18259270
Alignment:
Q  167 atgttttgtttatttttaa-tctgaaccattgaatccctttcttccacatgtcattca 223  Q
    ||||||||||||||||||| | ||||||||||||||  ||| | ||||||||||||||    
T  18259213 atgttttgtttatttttaaatatgaaccattgaatctttttttgccacatgtcattca 18259270  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 10258339 - 10258387
Alignment:
Q  8 tgagatgaacggcggcacaatcggtggttgttggcgctgatgagagggg 56  Q
    |||||||||||| || ||||||||||| || ||||| ||||||||||||    
T  10258339 tgagatgaacggtggtacaatcggtggatggtggcggtgatgagagggg 10258387  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 6356377 - 6356433
Alignment:
Q  167 atgttttgtttatttttaatctgaaccattgaatccctttcttccacatgtcattca 223  Q
    |||||||| ||||||| ||||||||| ||||||||  ||| | ||||||||||||||    
T  6356377 atgttttgattattttaaatctgaacaattgaatcgatttttaccacatgtcattca 6356433  T

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