View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13181_high_24 (Length: 342)
Name: NF13181_high_24
Description: NF13181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13181_high_24 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 29734146 - 29733833
Alignment:
| Q |
19 |
atcattatccgaaagattcgagtactggaagacaaaatatggagttgtctacaaggatgttgcagaacagaaaaaacactttcaaatattcaaacacaat |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29734146 |
atcattatccgaaagattcgagtactggaagacaaaatatggagttgtctacaaggatgttgcagaacagaaaaaacactttcaaatattcaaacacaat |
29734047 |
T |
|
| Q |
119 |
gtggcctacattgattccttcaatgctgcagggaacaaaccctacaaacttgccattaatagatttgtggataaacccatcgaggattccgatgacgggt |
218 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29734046 |
gtggcctacattgattacttcaatgctgcagggaacaaaccctacaaacttgccattaatagatttgtggataaacccatcgaggattccgatgacgggt |
29733947 |
T |
|
| Q |
219 |
tcgaaaggactactacaac---------aacaacatttaagtatgaaaatgtcactgatattcctgccaccgtagactggaggaaacgtggagcagttac |
309 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29733946 |
tcgaaaggactactacaacaacaccaacaacaacatttaagtatgaaaatgtcactgatattcctgccaccgtagactggaggaaacgtggagcagttac |
29733847 |
T |
|
| Q |
310 |
tccaatcaagaatc |
323 |
Q |
| |
|
|||||||||||||| |
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|
| T |
29733846 |
tccaatcaagaatc |
29733833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 24 - 323
Target Start/End: Original strand, 29746080 - 29746381
Alignment:
| Q |
24 |
tatccgaaagattcgagtactggaagacaaaatatggagttgtctacaaggatgttgcagaacagaaaaaacactttcaaatattcaaacacaatgtggc |
123 |
Q |
| |
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|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
29746080 |
tatctgaaagattcgaacactggaagacaaaatatggagttgtctacaaggatgttgcagaaaagaaaaaacacttcgaaatattcaaacacaatgtgat |
29746179 |
T |
|
| Q |
124 |
ctacattgattccttcaatgctgcagggaacaaaccctacaaacttgccattaatagatttgtggataaacccatcgaggat------tccgatgacggg |
217 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| | ||||||||||||||| |||||| ||| ||||||| |||||| ||| ||| ||| |
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| T |
29746180 |
ctacattgaatccttcaatgctgcagggaacaaaccc-ataaacttgccattaatggatttgcggaccaacccattgaggattcccaatcccatgctggg |
29746278 |
T |
|
| Q |
218 |
ttcgaaaggactactacaacaacaacatttaagtatgaaaatgtcactgatattcctgccaccgtagactggaggaaacgtggagcagttactccaatca |
317 |
Q |
| |
|
||| | || ||||||| ||| ||| || | || ||||| |||||||||||||| ||| |||| |||||||||||||| |||||||||||||| ||| |
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| T |
29746279 |
ttc---aagagaactacaagaacgtcatctaggcataaaaatatcactgatattcctaccaacgtatactggaggaaacgtagagcagttactccagtca |
29746375 |
T |
|
| Q |
318 |
agaatc |
323 |
Q |
| |
|
|||||| |
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|
| T |
29746376 |
agaatc |
29746381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 24 - 323
Target Start/End: Complemental strand, 29607087 - 29606787
Alignment:
| Q |
24 |
tatccgaaagattcgagtactggaagacaaaatatggagttgtctacaaggatgttgcagaacagaaaaaacactttcaaatattcaaacacaatgtggc |
123 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||| |
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|
| T |
29607087 |
tatccgaaagattcgaacactggaagacaaaatatggagttgtctacaaggatgttgcagaa-aaaaaaaacacttccaaatattcaaacacaatgtgat |
29606989 |
T |
|
| Q |
124 |
ctacattgattccttcaatgctgcagggaacaaaccctacaaacttgccattaatagatttgtggataaacccatcgaggat------tccgatgacggg |
217 |
Q |
| |
|
||||||||| ||| | ||||||||||| ||||||||| | ||||||||||||||| |||||| ||| ||||||| ||||| ||| ||| ||| |
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| T |
29606988 |
ctacattgaatccctaaatgctgcaggcaacaaaccc-ataaacttgccattaatggatttgcggaccaacccattaaggattcccaatcccatgctggg |
29606890 |
T |
|
| Q |
218 |
ttcgaaaggactactacaacaacaacatttaagtatgaaaatgtcactgatattcctgccaccgtagactggaggaaacgtggagcagttactccaatca |
317 |
Q |
| |
|
||| | || ||||||||||| ||| || | || ||||| |||||||||||||| || |||||||||||||||||||| |||||||||||||| ||| |
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|
| T |
29606889 |
ttc---aagagaactacaacaacgtcatctaggcataaaaatatcactgatattcctaccgccgtagactggaggaaacgtagagcagttactccagtca |
29606793 |
T |
|
| Q |
318 |
agaatc |
323 |
Q |
| |
|
|||||| |
|
|
| T |
29606792 |
agaatc |
29606787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 42 - 323
Target Start/End: Complemental strand, 30057203 - 30056910
Alignment:
| Q |
42 |
actggaagacaaaatatggagttgtctacaaggatgttgcagaacagaaaaaacactttcaaatattcaaacacaatgtggcctacattgattccttcaa |
141 |
Q |
| |
|
||||||||| ||| ||| |||| |||||||||||| |||||| || |||| ||| | |||||||||||||||||||| ||||||||||||||||| || |
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|
| T |
30057203 |
actggaagataaagtatagagtgatctacaaggatgatgcagaggaggaaaagcacatccaaatattcaaacacaatgttgcctacattgattcctttaa |
30057104 |
T |
|
| Q |
142 |
tgctgcagggaacaaaccctacaaacttgccattaatagatttgtggataaacccatcgaggattccgatgacgggttc--gaa-aggactactacaa-c |
237 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||||| |||| ||||| |||| ||||||||| |||||| ||| |||| ||| || | |
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|
| T |
30057103 |
tgctgcagggaacaaatcctacaaacttaccattaatagatttgcggatctacccaccgagccttccgatgatgggttcaagaagagga-aacttgaacc |
30057005 |
T |
|
| Q |
238 |
aacaac---------atttaagtatgaaaatgtcactgatattcctgccaccgtagactggaggaaacgtggagcagttactccaatcaagaatc |
323 |
Q |
| |
|
|||||| |||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
30057004 |
aacaacgtcgtcattatttaagtataaaaatatcactgatattcctgctgccgtagactggaggaaacgtggagcagttactccagtcaagaatc |
30056910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 34759301 - 34759144
Alignment:
| Q |
18 |
catcattatccgaaagattcgagtactggaagacaaaatatggagttgtctacaaggatgttgcagaacagaaaaaacactttcaaatattcaaacacaa |
117 |
Q |
| |
|
|||||||| | ||||||| | || ||||| |||| |||||||| |||| |||||||| || ||| || |||||||||| ||||||||||||||||| |
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|
| T |
34759301 |
catcattagcagaaagatacaagctctggatgacataatatggaaaggtctgcaaggatgatgtagagcacgaaaaacacttccaaatattcaaacacaa |
34759202 |
T |
|
| Q |
118 |
tgtggcctacattgattccttcaatgctgcagggaacaaaccctacaaacttgccatta |
176 |
Q |
| |
|
|||||||| |||||| ||| ||||| ||||||||| |||| |||||||||| ||||| |
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|
| T |
34759201 |
tgtggcctccattgaatcc-tcaatattgcagggaaaaaactatacaaacttggcatta |
34759144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 273
Target Start/End: Complemental strand, 31194940 - 31194903
Alignment:
| Q |
236 |
acaacaacatttaagtatgaaaatgtcactgatattcc |
273 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
31194940 |
acaacatcatttaagtatgaaaatgtcactgctattcc |
31194903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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