View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13181_high_29 (Length: 314)
Name: NF13181_high_29
Description: NF13181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13181_high_29 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 40 - 314
Target Start/End: Original strand, 15546236 - 15546510
Alignment:
| Q |
40 |
ttgtccgtgatgttaaaccaaaagctttggagcccttcaatgattatcaacaggtagaaataatcaaaaaaggtaatggatttcgcgcaaaatcagttgc |
139 |
Q |
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| T |
15546236 |
ttgtccgtgatgttaaaccaaaagctttggagcccttcaatgattatcaacaggtagaaataatcaaaaaaggtaatggatttcgcgcaaaatcagttgc |
15546335 |
T |
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| Q |
140 |
ctctgatggaattcctcctgggttattgaggnnnnnnngttggaaacttaatgctagcactccccgcaactaccatttaagcgaagctttaggctcaaat |
239 |
Q |
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| T |
15546336 |
ctctgatggaattcctcctgggttattgaggaaaaaaagttggaaacttaatgctagcactccccgcaactaccatttcagcgaagctttaggctcaaat |
15546435 |
T |
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| Q |
240 |
gattccttgcgtttcaagctaccaaatttcaactttccaattttcaatgattgttctgaaccagtggttgttgga |
314 |
Q |
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| T |
15546436 |
gattccttgcgtttcaagctaccaaatttcaactttccaattttcaatgattgttctgaatcagtggttgttgga |
15546510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 47 - 299
Target Start/End: Original strand, 15549016 - 15549268
Alignment:
| Q |
47 |
tgatgttaaaccaaaagctttggagcccttcaatgattatcaacaggtagaaataatcaaaaaaggtaatggatttcgcgcaaaatcagttgcctctgat |
146 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||| ||| |
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| T |
15549016 |
tgatgttaaaccaaaagctttagagcccttcaatgattatcaacaggtagaaataatcaaaaaaggttatggttttcgtgcaaaatcagttgcctcagat |
15549115 |
T |
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| Q |
147 |
ggaattcctcctgggttattgaggnnnnnnngttggaaacttaatgctagcactccccgcaactaccatttaagcgaagctttaggctcaaatgattcct |
246 |
Q |
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| T |
15549116 |
ggaattcctcctgggttattgaggaaaaaaaggtggaaacttaaggctagcactccccgcaaccaccatttaagcgaagctttaggctcaaatgattcct |
15549215 |
T |
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| Q |
247 |
tgcgtttcaagctaccaaatttcaactttccaattttcaatgattgttctgaa |
299 |
Q |
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| T |
15549216 |
tgcgtttgaagctaccaaatttcaactttccaattttcaatgattgttctgaa |
15549268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 47 - 314
Target Start/End: Original strand, 15528735 - 15529002
Alignment:
| Q |
47 |
tgatgttaaaccaaaagctttggagcccttcaatgattatcaacaggtagaaataatcaaaaaaggtaatggatttcgcgcaaaatcagttgcctctgat |
146 |
Q |
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| T |
15528735 |
tgatgttaaaccaatagctttggagcccttcaatgattatcaacaggtagaaataatcaaaaaaggttatggttttcatgcaaaatccgttgcctctgat |
15528834 |
T |
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| Q |
147 |
ggaattcctcctgggttattgaggnnnnnnngttggaaacttaatgctagcactccccgcaactaccatttaagcgaagctttaggctcaaatgattcct |
246 |
Q |
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|||||||||||||| ||||| ||| | |||| |||| |||||||||||||||| |||||||| |||||| |||||||||| ||||||||||||| |
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| T |
15528835 |
ggaattcctcctggcttattaagggaaaaagggtggacactttatgctagcactccccggaactaccaattaagccaagctttaggttcaaatgattcct |
15528934 |
T |
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| Q |
247 |
tgcgtttcaagctaccaaatttcaactttccaattttcaatgattgttctgaaccagtggttgttgga |
314 |
Q |
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| T |
15528935 |
tgcgttccaagctaccaaatttcaacttttcaattttgaatgattgttctgaatcagtggttgttgga |
15529002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 40 - 314
Target Start/End: Original strand, 15518989 - 15519263
Alignment:
| Q |
40 |
ttgtccgtgatgttaaaccaaaagctttggagcccttcaatgattatcaacaggtagaaataatcaaaaaaggtaatggatttcgcgcaaaatcagttgc |
139 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||| || || |||| |||| ||||||||| | || |
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| T |
15518989 |
ttgtccgtgatgttaaaccaaaacctttggagcccttcaatgattatcagcaggttgaaataatcaagaagagtcatggttttcacgcaaaatctatcgc |
15519088 |
T |
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| Q |
140 |
ctctgatggaattcctcctgggttattgaggnnnnnnngttggaaacttaatgctagcactccccgcaactaccatttaagcgaagctttaggctcaaat |
239 |
Q |
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|| ||||||||||||||||| ||||||||| | |||| |||| ||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
15519089 |
ttcagatggaattcctcctggtttattgagggaaaaagggtggacactttatgctagcactccccgcaactaccaattaagccaagctttaggctcaaat |
15519188 |
T |
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| Q |
240 |
gattccttgcgtttcaagctaccaaatttcaactttccaattttcaatgattgttctgaaccagtggttgttgga |
314 |
Q |
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| T |
15519189 |
gattccttgcgttccaagctaccaaatttcaattttccaattttgaatgattgttctgaatcagtggttgttgga |
15519263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 40 - 278
Target Start/End: Original strand, 15522641 - 15522879
Alignment:
| Q |
40 |
ttgtccgtgatgttaaaccaaaagctttggagcccttcaatgattatcaacaggtagaaataatcaaaaaaggtaatggatttcgcgcaaaatcagttgc |
139 |
Q |
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|||||| |||||||||||||| ||||||| ||||||||||||||||||| ||| | ||||||||||| || || |||| |||| |||||||| | || |
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| T |
15522641 |
ttgtccatgatgttaaaccaagagctttgaagcccttcaatgattatcagcagtttgaaataatcaagaagagttatggttttcaagcaaaatctatcgc |
15522740 |
T |
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| Q |
140 |
ctctgatggaattcctcctgggttattgaggnnnnnnngttggaaacttaatgctagcactccccgcaactaccatttaagcgaagctttaggctcaaat |
239 |
Q |
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| T |
15522741 |
ttcaaatggaattcctcctgggttattgagggaagaagggtgggcacttcatgctagcactccccgcaactaccaattaagccaagctttaggttcaaat |
15522840 |
T |
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| Q |
240 |
gattccttgcgtttcaagctaccaaatttcaactttcca |
278 |
Q |
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| T |
15522841 |
gattccttgcgttccaagctaccaaatttcaactttcca |
15522879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 234 - 314
Target Start/End: Original strand, 15551227 - 15551307
Alignment:
| Q |
234 |
tcaaatgattccttgcgtttcaagctaccaaatttcaactttccaattttcaatgattgttctgaaccagtggttgttgga |
314 |
Q |
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||||||||||||||||||| |||||||| |||||||||||||| | | ||||||| |||||||| |||||||||||||| |
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| T |
15551227 |
tcaaatgattccttgcgttctaagctaccggatttcaactttccattgtccaatgatcgttctgaatcagtggttgttgga |
15551307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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