View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13181_high_32 (Length: 283)
Name: NF13181_high_32
Description: NF13181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13181_high_32 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 15546110 - 15545829
Alignment:
| Q |
1 |
tctctttctttaaccatgaaagataattaccaacacaaatataattatgtctcatattacaatactctcatttgggatgacagggaaaaacttgtacaaa |
100 |
Q |
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| T |
15546110 |
tctctttctttaatcatgaaagataattaccaacacaaatataattatgtctcatattacaatactctcagttgggatgacagggaaaaacttgtacaaa |
15546011 |
T |
|
| Q |
101 |
aattatgagaaaatgattaaaattaaataaatacatacccttgatatttcccctcccttcttataacatagtagcgattcgaagacaacggttgattcaa |
200 |
Q |
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| T |
15546010 |
aattacgagaaaatgattaaaattaaataaatacatacccttgatatttcccctcccttcttataacatagtagcgattcgaagacaacggttgattcaa |
15545911 |
T |
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| Q |
201 |
tactggaatgaacatggcttcttcactgtatgtgttcatttctccagttatcatattgtctatacaagatgtataattgatg |
282 |
Q |
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| T |
15545910 |
tactggaatgaacatggcttcttcactgtatgtgtttatttctctagttatcatattttctatacaagatgtataattgatg |
15545829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 15522518 - 15522295
Alignment:
| Q |
1 |
tctctttctttaaccatgaaagataattaccaacacaaatataattatgtctcatattacaatactctcatttgggatgacagggaaaaacttgtacaaa |
100 |
Q |
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| T |
15522518 |
tctctttctttaaccatgaaagataattaccaacacaaatataattatgtctcatattacaatactctcagttgggatgacagggaaaaacttgtacaaa |
15522419 |
T |
|
| Q |
101 |
aattatgagaaaatgattaaaattaaataaatacatacccttgatatttcccctcccttcttataacatagtagcgattcgaagacaacggttgattcaa |
200 |
Q |
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| T |
15522418 |
aattacgagaaaatgattaaaattaaataaatacatacccttgatatttcccctcccttcttataacatagtagcgattagaagacaatggttgattcaa |
15522319 |
T |
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| Q |
201 |
tactggaatgaacatggcttcttc |
224 |
Q |
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||||||||||||||| |||||||| |
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| T |
15522318 |
tactggaatgaacatagcttcttc |
15522295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 122 - 236
Target Start/End: Complemental strand, 15528549 - 15528435
Alignment:
| Q |
122 |
attaaataaatacatacccttgatatttcccctcccttcttataacatagtagcgattcgaagacaacggttgattcaatactggaatgaacatggcttc |
221 |
Q |
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| T |
15528549 |
attaaataaatacatacccttgatacttccccttccttcttataacatagtagcgattcgaagacaatggttgattcaacactggaatgaacatagcttc |
15528450 |
T |
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| Q |
222 |
ttcactgtatgtgtt |
236 |
Q |
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| T |
15528449 |
ttcaccgtatgtgtt |
15528435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 15518099 - 15518002
Alignment:
| Q |
130 |
aatacatacccttgatatttcccctcccttcttataacatagtagcgattcgaagacaacggttgattcaatactggaatgaacatggcttcttcact |
227 |
Q |
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|||||||||||||||| || |||| |||||||||||| ||||||||||| |||||||| |||||||| ||||||||||||||||| ||||||||||| |
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| T |
15518099 |
aatacatacccttgattctttcccttccttcttataacgtagtagcgattagaagacaatggttgatttaatactggaatgaacatagcttcttcact |
15518002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 15550682 - 15550606
Alignment:
| Q |
132 |
tacatacccttgatatttcccctcccttcttataacatagtagcgattcgaagacaacggttgattcaatactggaa |
208 |
Q |
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|||||||||||||| ||||||| ||||| ||| ||||| || || ||||||||||| |||||||||||||| |||| |
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| T |
15550682 |
tacatacccttgattcttccccttccttcgtatgacataataacggttcgaagacaatggttgattcaataccggaa |
15550606 |
T |
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