View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13181_high_5 (Length: 589)
Name: NF13181_high_5
Description: NF13181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13181_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 16 - 571
Target Start/End: Original strand, 26454241 - 26454797
Alignment:
| Q |
16 |
tcaaccgtgttccatgtttcgtgatacacacaactcattgcacacatcgcatattgccacttaattgtacactttatctttctttatggttgcgcgatgc |
115 |
Q |
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|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26454241 |
tcaaccttgttccatgtttcgtgatacac--aactcattgcacacatcgcatattgccacttaattgtacactttatctttctttatggttgcgcgatgc |
26454338 |
T |
|
| Q |
116 |
gtggctactagcacccgttcaacataaggcagtagctcgtattttctcaattcttcatctcttgttctatttctcatcaacaaaaggtatgtgctaacta |
215 |
Q |
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|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26454339 |
gtggctcctagcacccgttcgacataaggcagtagctcgtattttctcaattcttcatctcttgttctatttctcatcaacaaaaggtatgtgctaacta |
26454438 |
T |
|
| Q |
216 |
tacatcaagaaatcacttgattgatcttataaaaagtgtagcatgaccacatagttgtttgttttaggtgatttgttgtggttcaaggccttgtgcttta |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26454439 |
tacatcaagaaatcacttgattgatcttataaaaagtgtagcatgaccccatagttgtttgttttaggtgatttgttgtggttcaaggccttgtgcttta |
26454538 |
T |
|
| Q |
316 |
aattactatcacaagcccaaccattggattatttacataaatttgactaaaatgaattataacttgctagaaacactctaaaatgtctcctaaattatgc |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26454539 |
aattactatcacaagcccaaccattggattatttacataaatttgactaaaatgaattataacttgctagaaacactctaaaatgtctcctaaattatgc |
26454638 |
T |
|
| Q |
416 |
taaaaaatactatgattgattatcatcacgaccacatctcttgtcttcatatgttttcatcattttggattat---ttcttcttcaccatcaattatcat |
512 |
Q |
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| T |
26454639 |
taaaaaatactatgattgattatcatcacgaccacatctcttgtcttcatatgttgtcatcattttggattatttcttcttcttcaccatcaattatcat |
26454738 |
T |
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| Q |
513 |
tatgtcaatactttcatcatcaacgttcaccatgttgcatttctcattcttgggattat |
571 |
Q |
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| T |
26454739 |
tatgtcaatactttcatcatcaacgttcaccatgttgcatttctcattcttgggattat |
26454797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 399
Target Start/End: Original strand, 24455280 - 24455396
Alignment:
| Q |
283 |
gtgatttgttgtggttcaaggccttgtgctttaaattactatcacaagcccaaccattggattatttacataaatttgactaaaatgaattataacttgc |
382 |
Q |
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| T |
24455280 |
gtgatttgacgtggttcaaggccttgtgcttcaaattactttcccatgaccatccattgaattagttacataaactcgattaaaaaaattgataacctgc |
24455379 |
T |
|
| Q |
383 |
tagaaacactctaaaat |
399 |
Q |
| |
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|| ||| |||||||||| |
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| T |
24455380 |
taaaaaaactctaaaat |
24455396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 293 - 421
Target Start/End: Complemental strand, 13962373 - 13962245
Alignment:
| Q |
293 |
gtggttcaaggccttgtgctttaaattactatcacaagcccaaccattggattatttacataaatttgactaaaatgaattataacttgctagaaacact |
392 |
Q |
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||||||||||||||||||||| ||| | | || || || || |||||| ||||||| |||||| | |||||||| | | | ||||||||| ||| ||| |
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| T |
13962373 |
gtggttcaaggccttgtgcttcgaatcattctctcatgctcatccattgaattatttgcataaactcgactaaaacaattgagaacttgctaaaaagact |
13962274 |
T |
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| Q |
393 |
ctaaaatgtctcctaaattatgctaaaaa |
421 |
Q |
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| T |
13962273 |
ctaaaataacacataaatgatgctaaaaa |
13962245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 247 - 291
Target Start/End: Complemental strand, 43716728 - 43716684
Alignment:
| Q |
247 |
aaaagtgtagcatgaccacatagttgtttgttttaggtgatttgt |
291 |
Q |
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| T |
43716728 |
aaaagtatagcatgaccacatagttgtctcttttgggtgatttgt |
43716684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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