View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13181_high_6 (Length: 585)
Name: NF13181_high_6
Description: NF13181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13181_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 18 - 577
Target Start/End: Original strand, 36541069 - 36541634
Alignment:
| Q |
18 |
acaaggatacaaaattatatacaagggcaaggcaatgctcatgcaaataatggagaattacnnnnnnnnnnnnnngatgtagaagatattgtttgtagca |
117 |
Q |
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| T |
36541069 |
acaaggatacaaaattatatacaagggcaaggcaatgctcatgcaaagaatggagaattacatat----------gatgtagaagatattgtttgtagca |
36541158 |
T |
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| Q |
118 |
ttgattattatatgtgcaagtaatatccaagttgtatcctacatgtagcaatcaatgagaaatacaatttgatcattgtagttaagaatcatattatgag |
217 |
Q |
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| T |
36541159 |
ttgattattatacgtgcaagtaatatccaagttgtatcctacatgtagcaatcaatgagaaatacaatttgatcattgtagttaagaatcatattatgag |
36541258 |
T |
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| Q |
218 |
gaagagatggttcctttaatcaaaacctagttcatgaaaattagtgtaaattgaaaacaaattttcaaaacttagtcaacaatagtcaattatctcaatc |
317 |
Q |
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| T |
36541259 |
gaagagatggttcctttaatcaaaacctagttcatgaaaattactgtaaattgaaaacaaattttcaaaacttagtcaacaatagtcaattatctcaatc |
36541358 |
T |
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| Q |
318 |
ttgat---nnnnnnnnnnnttgaaatttgaagttcataattttcaaagtcactatgtgagtcattcgaccttttctcaaaaacataagta---------- |
404 |
Q |
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||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36541359 |
ttgatcaaaataaaaaaaattgaaatttgaagttcataattttcaaaatcactatgtgagtcattcgaccttttctcaaaaacataagtaaattaccaat |
36541458 |
T |
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| Q |
405 |
---aataatcaattacaactacaaaaaatttagatccatgtatataaactacttacctatcaatggaaaaattagctgatgataacgaaattccaactcc |
501 |
Q |
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| T |
36541459 |
tataataatcaattacaactacaaaaaatttagatccatgtatataaactacttacctatcaatggaaaaattagctgatgataacgaaattccaactcc |
36541558 |
T |
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| Q |
502 |
gtgagactcatcatcatcgtctacatgaatattgcatccggtgaatccaaaagatacaatatctacgagttcatct |
577 |
Q |
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| T |
36541559 |
gtgagactcatcatcatcgtctacatgaatattgcatccggtgaatccaaaagatacaatatctacgagttcatct |
36541634 |
T |
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