View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13181_high_7 (Length: 585)
Name: NF13181_high_7
Description: NF13181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13181_high_7 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 1886580 - 1886127
Alignment:
| Q |
1 |
tattgttgtaatttgact--tagtactatatctactttgtaaaccctaattcatcaaaagaaatgtatcaaactataattgctctattgtcgtagaggtg |
98 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1886580 |
tattgttgtaatttgacccatagtactatatctactttgtaaaccctaattcatcaaaagaaatgtatcaaactataattgctctattgtcgtagaggtg |
1886481 |
T |
|
| Q |
99 |
gatacaattggttgaattacgtgaacaaagattgagtctaacaatgctccacacatagcaatgtgggattttatgtttaaaatatgaacaaaatattcca |
198 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1886480 |
gacacaattggttgaattacgtgaacaaagattgagtctaacaatgctccacaaatagcaatgtgggattttatgtttaaaatatgaacaaaatattcca |
1886381 |
T |
|
| Q |
199 |
caactcctaccagtaaaatgtaccatagtgaagacagaaaatagtcaaatattaggagaatgccagcaatgatccaacttgaatccactgacttgagaaa |
298 |
Q |
| |
|
||| |||||||||||||||||||||||||||| ||| || ||| |||| | |||| |||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
1886380 |
caaatcctaccagtaaaatgtaccatagtgaaaacataagatattcaactgttagaagaatgccagcaatgacccaacttgaatcaactgacttgagaaa |
1886281 |
T |
|
| Q |
299 |
gccaattagttgatgaagtgatgagaaattcatgatcgacggtcctttgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctattacc |
398 |
Q |
| |
|
||||||| |||||||||| |||||| ||| |||||| || ||||||||||| ||||||| ||||||||| ||| ||||||| |||||||| || | || | |
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| T |
1886280 |
gccaattggttgatgaagagatgaggaatgcatgatggatggtcctttgtaaaaagtcaacacaaaagctcctactattgagattatgctccccagtatc |
1886181 |
T |
|
| Q |
399 |
ttagcattactacttcgac---ttgcagctaacttttccatccttaattgcaat |
449 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||||||||| |||| |
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|
| T |
1886180 |
ttagcattactacttctactctttgcagctaacttttccatccttaattacaat |
1886127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 204 - 567
Target Start/End: Complemental strand, 1907305 - 1906939
Alignment:
| Q |
204 |
cctaccagtaaaatgtaccatagtgaagacagaaaatagtcaaatattaggagaatgccagcaatgatccaacttgaatccactgacttgagaaagccaa |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
1907305 |
cctaccagtaaaatgtaccatagtgaagacagaaaatagtcaaatattaggagaatgccagcaatggcccaacttgaatccactgacttgagaaagccag |
1907206 |
T |
|
| Q |
304 |
ttagttgatgaagtgatgagaaattcatgatcgacggtcctttgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctattaccttagc |
403 |
Q |
| |
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| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
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|
| T |
1907205 |
ctggttgatgaagtgatgaagaattcatgatcgacggtcctttgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctactacctttgc |
1907106 |
T |
|
| Q |
404 |
attactacttcgac---ttgcagctaacttttccatccttaattgcaatgttaacaagaaaacaaataagtggacaataaactaaggtgtttcataaata |
500 |
Q |
| |
|
||| ||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1907105 |
attgctacttctactctttgcagctaacttttccatccttaattgcaatgataacaagaaaacaaataagtggactataaactaaggtgtttcataaata |
1907006 |
T |
|
| Q |
501 |
taaagctctgcaaaaaatgtagttttaaccaattttcttggccgaagttgttaaatagcggctatag |
567 |
Q |
| |
|
|||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
1907005 |
taaagcactgcgaaaaatgtagttttaaacaattttcttggccgaagttgttaaatagcggctatag |
1906939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 204 - 485
Target Start/End: Complemental strand, 1903072 - 1902788
Alignment:
| Q |
204 |
cctaccagtaaaatgtaccatagtgaagacagaaaatagtcaaatattaggagaatgccagcaatgatccaacttgaatccactgacttgagaaagccaa |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
1903072 |
cctaccagtaaaatgtaccatagtgaagacagaaaatagtcaaatattaggagaatgccagcaatggcccaacttgaatccactgacttgagaaagccag |
1902973 |
T |
|
| Q |
304 |
ttagttgatgaagtgatgagaaattcatgatcgacggtcctttgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctattaccttagc |
403 |
Q |
| |
|
| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
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|
| T |
1902972 |
ctggttgatgaagtgatgaagaattcatgatcgacggtcctttgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctactacctttgc |
1902873 |
T |
|
| Q |
404 |
attactacttcgac---ttgcagctaacttttccatccttaattgcaatgttaacaagaaaacaaataagtggacaataaactaa |
485 |
Q |
| |
|
||| ||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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|
| T |
1902872 |
attgctacttctactctttgcagctaacttttccatccttaattgcaatgataacaagaaaacaaataagtggactataaactaa |
1902788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 206 - 499
Target Start/End: Complemental strand, 1897580 - 1897281
Alignment:
| Q |
206 |
taccagtaaaatgtaccatagtgaagacagaaaatagtcaaatattaggagaatgccagcaatgat---ccaacttgaatccactgacttgagaaagcca |
302 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
1897580 |
taccactaaaatgtaccatagtgaagacagaaaatagtcaactatcaggagaatgccagcaatgacatcccaacttgaatctactgacttgagaaagcca |
1897481 |
T |
|
| Q |
303 |
attagttgatgaagtgatgagaaattcatgatcgacggtcctttgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctattaccttag |
402 |
Q |
| |
|
||| ||||||||||||||||||||||||||| | ||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||| | |
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|
| T |
1897480 |
attgattgatgaagtgatgagaaattcatgatgggtggtcctttgtagaaagttaacacaaaagcacctgctattgatattatgcttcccattaccttgg |
1897381 |
T |
|
| Q |
403 |
cattactacttcgac---ttgcagctaacttttccatccttaattgcaatgttaacaagaaaacaaataagtggacaataaactaaggtgtttcataaat |
499 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||||||||| ||| | |||| |||||||||||||||| ||| || |||||||||||| |
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|
| T |
1897380 |
cattactacttctactctttgcagctaacttttccatccttaattgcaatgataagaggaaacaaaataagtggacaatagactgagatgtttcataaat |
1897281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 204 - 486
Target Start/End: Complemental strand, 1912964 - 1912679
Alignment:
| Q |
204 |
cctaccagtaaaatgtaccatagtgaagacagaaaatagtcaaatattaggagaatgccagcaatgatccaacttgaatccactgacttgagaaagccaa |
303 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||| | | || ||||| ||||||||| ||||||||||||||| |||||||||||| ||| |
|
|
| T |
1912964 |
cctacctgtaaaatgtaccatagtgaaaccagaaaatagtcaattgtcagcagaataccagcaatggcccaacttgaatccacagacttgagaaagtcaa |
1912865 |
T |
|
| Q |
304 |
ttagttgatgaagtgatgagaaattcatgatcgacggtcctttgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctattaccttagc |
403 |
Q |
| |
|
|| ||||||||||||||||| |||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
1912864 |
ttggttgatgaagtgatgaggaattcatgatggattgtcctttgtagaaagtcaacacaaaagcacctgctattgatattatgcttccaattaccttagc |
1912765 |
T |
|
| Q |
404 |
attactacttcgac---ttgcagctaacttttccatccttaattgcaatgttaacaagaaaacaaataagtggacaataaactaag |
486 |
Q |
| |
|
|||||| |||| || ||||||||||||||||||| ||||||||||||| ||||| ||||||||||||| |||||||| |||||| |
|
|
| T |
1912764 |
attactgcttctactctttgcagctaacttttccattcttaattgcaatgataacaggaaaacaaataaggggacaatagactaag |
1912679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 241 - 485
Target Start/End: Complemental strand, 1892105 - 1891858
Alignment:
| Q |
241 |
agtcaaatattaggagaatgccagcaatgatccaacttgaatccactgacttgagaaagccaattagttgatgaagtgatgagaaattcatgatcgacgg |
340 |
Q |
| |
|
|||||| | |||| ||||||||| |||| ||||||||||||||||| | ||||||||||| | |||||||||||||||| |||||||||||||||| |
|
|
| T |
1892105 |
agtcaattgttagcagaatgccaccaatcgcccaacttgaatccactgccatgagaaagccagctggttgatgaagtgatgaagaattcatgatcgacgg |
1892006 |
T |
|
| Q |
341 |
tcctttgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctattaccttagcattactacttcgac---ttgcagctaacttttccatc |
437 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||| || |||||||||||||||||||| |
|
|
| T |
1892005 |
tcctttgtagaaagtcatcacaaaagcacctgctattgatattatgcttcctactacctttgcattgctacttctactctttgcagctaacttttccatc |
1891906 |
T |
|
| Q |
438 |
cttaattgcaatgttaacaagaaaacaaataagtggacaataaactaa |
485 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
1891905 |
cttaattgcaatgataacaagaaaacaaataagtggactataaactaa |
1891858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 174 - 479
Target Start/End: Complemental strand, 1879817 - 1879509
Alignment:
| Q |
174 |
tttaaaatatgaacaaaatattccacaactcctaccagtaaaatgtaccatagtgaagacagaaaatagtcaaatattaggagaatgccagcaatgatcc |
273 |
Q |
| |
|
|||||||||||| ||||| |||||| || |||||||| |||||||||||| |||||| ||| |||||| | | | |||| ||||||||||||| || |
|
|
| T |
1879817 |
tttaaaatatgatcaaaacattccataaatcctaccattaaaatgtaccaaagtgaaaacatcaaatagacgattgttagaagaatgccagcaaaagccc |
1879718 |
T |
|
| Q |
274 |
aacttgaatccactgacttgagaaagccaattagttgatgaagtgatgagaaattcatgatcgacggtcctttgtagaaagtcatcacaaaagcacctgc |
373 |
Q |
| |
|
||||||||||| |||||||||||||| ||| | ||||||||||| | || |||||||||| || ||||||||||||||||||| ||||||||||||||| |
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|
| T |
1879717 |
aacttgaatcctctgacttgagaaagtcaactggttgatgaagtaaagatgaattcatgatggatggtcctttgtagaaagtcaacacaaaagcacctgc |
1879618 |
T |
|
| Q |
374 |
tattgatattatgcttcctattaccttagcattactacttcgac---ttgcagctaacttttccatccttaattgcaatgttaacaagaaaacaaataag |
470 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||| | |||||||||||| |
|
|
| T |
1879617 |
tattgagattatgcttccaattaccttagcattactacttctactctttgcagctaacttttccatccttaattgcaatgataagagcaaaacaaataag |
1879518 |
T |
|
| Q |
471 |
tggacaata |
479 |
Q |
| |
|
||||||||| |
|
|
| T |
1879517 |
tggacaata |
1879509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 279 - 384
Target Start/End: Original strand, 27039532 - 27039637
Alignment:
| Q |
279 |
gaatccactgacttgagaaagccaattagttgatgaagtgatgagaaattcatgatcgacggtcctttgtagaaagtcatcacaaaagcacctgctattg |
378 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||| || ||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
27039532 |
gaatccattgacttgagaaagccaattggttgatgaagtgatgaggaattcatgatggatggtcctttgtagaaagtcaacacaaaagcacctgctattg |
27039631 |
T |
|
| Q |
379 |
atatta |
384 |
Q |
| |
|
| |||| |
|
|
| T |
27039632 |
agatta |
27039637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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