View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13181_low_10 (Length: 552)
Name: NF13181_low_10
Description: NF13181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13181_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 19 - 393
Target Start/End: Original strand, 3217748 - 3218122
Alignment:
| Q |
19 |
aaatgataacaatggaactgaaaaatttgctacaaatttgtttatgcctgcacattgatctggtgtgaaaagtttccaccatttaacacaaatgtatgct |
118 |
Q |
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| T |
3217748 |
aaatgataacaatggaactgaaaaatttgctacaaatttgtttatgcctgcacattgatctggtgtgaaaagtttccaccatttaacacaaatgtatgct |
3217847 |
T |
|
| Q |
119 |
agtaacatagttacatataatgggacagtggctgttactacatgatagacatcaattaaggaaatcatgatgatgctatgtcttaagtgttgaataatgt |
218 |
Q |
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| T |
3217848 |
agtaacatagttacatataatgggacagtggctgttactacatgatagacatcaattaaggaaatcatgatgatgctatgtcttaagtgttgaataatgt |
3217947 |
T |
|
| Q |
219 |
tttaggacattttacaaacatgataaggtttgtagcatgatgctttttaggctactttgttggattgtacaataattattaagatggaatataattttgt |
318 |
Q |
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| T |
3217948 |
tttaggacattttacaaacatgataaggtttgtagcatgatgctttttaggctactttgttggattgtacaataattattaagatggaatataattttgt |
3218047 |
T |
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| Q |
319 |
ttgtgaagatgcttcttcatagtgacctatcaggcttttcactattccttctattcttatactagtgtccttctg |
393 |
Q |
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| T |
3218048 |
ttgtgaagatgcttcttcatagtgacctatcaggcttttcactattccttctattcttatactagtgtccttctg |
3218122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 468 - 532
Target Start/End: Original strand, 3218542 - 3218606
Alignment:
| Q |
468 |
cttggttatatgcaattcgcaatatcaaactcgctgcatgttctcgtgaatataactcagctgat |
532 |
Q |
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| T |
3218542 |
cttggttatatgcaattcgcaatatcaaactcactacatgttctcgtgaatataactcagctgat |
3218606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 44 - 187
Target Start/End: Original strand, 2036033 - 2036176
Alignment:
| Q |
44 |
tttgctacaaatttgtttatgcctgcacattgatctggtgtgaaaagtttccaccatttaacacaaatgtatgctagtaacatagttacatataatggga |
143 |
Q |
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||||| |||||||||||||| |||| |||||| ||| ||||||| | || ||||||| || | | || ||||||| ||| |||||||||||||||| |
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| T |
2036033 |
tttgcaacaaatttgtttattcctgaacattgttcttgtgtgaagatcttaaaccatttcactgagacataggctagtatcattgttacatataatggga |
2036132 |
T |
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| Q |
144 |
cagtggctgttactacatgatagacatcaattaaggaaatcatg |
187 |
Q |
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| T |
2036133 |
cagttgttgttattacatgataaacattggctaaggaaatcatg |
2036176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 102
Target Start/End: Complemental strand, 34970841 - 34970770
Alignment:
| Q |
31 |
tggaactgaaaaatttgctacaaatttgtttatgcctgcacattgatctggtgtgaaaagtttccaccattt |
102 |
Q |
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|||||||| |||| ||||||||| ||||||||||| |||||||||||||||||| | |||||||||||| |
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| T |
34970841 |
tggaactgcaaaaagtgctacaaaacggtttatgcctgaacattgatctggtgtgaagattttccaccattt |
34970770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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