View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13181_low_11 (Length: 551)
Name: NF13181_low_11
Description: NF13181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13181_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Complemental strand, 43436690 - 43436165
Alignment:
| Q |
1 |
ttgatatcagttatgtgcgagatttgctttgccatatcctggatattggatcaattccctaagtggcttcctatcaaccgtgaaacatatctcgacagac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43436690 |
ttgatatcagttatgtgcgagatttgctttgccatatcctggatattggatcaattccctaagtggcttcctatcaaccgtgaaacatatctcgacagac |
43436591 |
T |
|
| Q |
101 |
ttgcactgaggtaagaccttttaaacttcatcgtgacttatannnnnnnnnnnncaatctgatgttttttctattccaaaatacgtgtctggtgtataga |
200 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
43436590 |
ttgcactgaggtaagaccttttaaacttca-cgtgacttatattttttatttttcaatctgatgtttttt-tattccaaaatacgtgtctggtgtataga |
43436493 |
T |
|
| Q |
201 |
tatgatcaggaaggagaaccatcccaactagcagctgttgacatttttgtcagcactgttgacccattaaaggagcctccgcttgtgactgccaatactg |
300 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43436492 |
tatgatcaggaaggagaaccatcccagctagcagctgttgacatttttgtcagcactgttgacccgttaaaggagcctccgcttgtgactgccaatactg |
43436393 |
T |
|
| Q |
301 |
tactttcaattcttgcagttgattatccagtggataaggtttcctgctacgtatcagatgacggcgctgctatgttgacattggaagctcttgctcagac |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43436392 |
tactttcaattcttgcagttgattatccagtggataaggtttcctgctacgtatcggatgacggcgctgctatgttgacattggaagctcttgctcagac |
43436293 |
T |
|
| Q |
401 |
atcagagtttgcgagaaaatgggttcctttctgcaagaagtatactattgaaccccgtgcacccgagtcgttctttgcgcagaagattggcttcttcaag |
500 |
Q |
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| T |
43436292 |
atcagagtttgcgagaaaatgggttcctttctgcaagaagtatactattgaaccccgtgcacccgagtcgttctttgcgcagaagattgacttcttcaag |
43436193 |
T |
|
| Q |
501 |
gatatagttcagacatcatttgtgaagg |
528 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
43436192 |
gatatagttcagacatcatttgtgaagg |
43436165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 193 - 528
Target Start/End: Complemental strand, 13826498 - 13826163
Alignment:
| Q |
193 |
tgtatagatatgatcaggaaggagaaccatcccaactagcagctgttgacatttttgtcagcactgttgacccattaaaggagcctccgcttgtgactgc |
292 |
Q |
| |
|
|||| |||||||||| ||||||||||||||| |||||||| ||||| |||||||||||||| || |||||||| |||||||||||||| || |||||||| |
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| T |
13826498 |
tgtacagatatgatcgggaaggagaaccatctcaactagcggctgtcgacatttttgtcagtaccgttgacccgttaaaggagcctccactcgtgactgc |
13826399 |
T |
|
| Q |
293 |
caatactgtactttcaattcttgcagttgattatccagtggataaggtttcctgctacgtatcagatgacggcgctgctatgttgacattggaagctctt |
392 |
Q |
| |
|
||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||| || || ||||||||||| |||||||||||||| ||||||||| |
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| T |
13826398 |
caatactgtactttctattctttcagttgactatccagtggataaggtttcctgctatgtttctgatgacggcgccgctatgttgacatttgaagctctt |
13826299 |
T |
|
| Q |
393 |
gctcagacatcagagtttgcgagaaaatgggttcctttctgcaagaagtatactattgaaccccgtgcacccgagtcgttctttgcgcagaagattggct |
492 |
Q |
| |
|
||| | |||||||||||||| |||||||||||||| ||| ||||||||||| |||||||||||| |||||||||| || |||||| |||||||||| | |
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| T |
13826298 |
gctgaaacatcagagtttgcaagaaaatgggttccattcaccaagaagtataatattgaaccccgcgcacccgagtggtactttgcacagaagattgatt |
13826199 |
T |
|
| Q |
493 |
tcttcaaggatatagttcagacatcatttgtgaagg |
528 |
Q |
| |
|
||| ||||||| ||||||||||||||||| |||| |
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|
| T |
13826198 |
acttgaaggataaggttcagacatcatttgtcaagg |
13826163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 5 - 132
Target Start/End: Complemental strand, 13826683 - 13826556
Alignment:
| Q |
5 |
tatcagttatgtgcgagatttgctttgccatatcctggatattggatcaattccctaagtggcttcctatcaaccgtgaaacatatctcgacagacttgc |
104 |
Q |
| |
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|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
13826683 |
tatcagttatatgcgagatttggtttgccatatcctggatattggatcaattccctaagtggcttcctgtcaaccgcgaaacatatctcgacagacttgc |
13826584 |
T |
|
| Q |
105 |
actgaggtaagaccttttaaacttcatc |
132 |
Q |
| |
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||||||||| |||||||||| ||||| |
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| T |
13826583 |
actgaggtacagccttttaaacatcatc |
13826556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 9e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 198 - 468
Target Start/End: Original strand, 9477691 - 9477961
Alignment:
| Q |
198 |
agatatgatcaggaaggagaaccatcccaactagcagctgttgacatttttgtcagcactgttgacccattaaaggagcctccgcttgtgactgccaata |
297 |
Q |
| |
|
|||||||||| |||||||||||| || || ||||||| ||||||||||| ||||| |||||||| || ||||||||||| || ||||||| ||||||| |
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| T |
9477691 |
agatatgatcgggaaggagaaccttcacagttagcagccgttgacattttcgtcagtactgttgatccgttaaaggagcccccaattgtgacagccaata |
9477790 |
T |
|
| Q |
298 |
ctgtactttcaattcttgcagttgattatccagtggataaggtttcctgctacgtatcagatgacggcgctgctatgttgacattggaagctcttgctca |
397 |
Q |
| |
|
||||||| || |||||||| ||||| || |||||||||||||| || || || || || ||||| || ||||||||||||||||| ||||||||||| | |
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| T |
9477791 |
ctgtactatccattcttgctgttgactacccagtggataaggtctcatgttatgtctctgatgatggtgctgctatgttgacatttgaagctcttgccga |
9477890 |
T |
|
| Q |
398 |
gacatcagagtttgcgagaaaatgggttcctttctgcaagaagtatactattgaaccccgtgcacccgagt |
468 |
Q |
| |
|
||||||||| ||||| || ||||||||||||||||||||||| ||| |||||||| || ||||| |||| |
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|
| T |
9477891 |
gacatcagaatttgcaaggaaatgggttcctttctgcaagaaatatgaaattgaaccacgagcacctgagt |
9477961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 4 - 98
Target Start/End: Original strand, 9477218 - 9477312
Alignment:
| Q |
4 |
atatcagttatgtgcgagatttgctttgccatatcctggatattggatcaattccctaagtggcttcctatcaaccgtgaaacatatctcgacag |
98 |
Q |
| |
|
||||||||||| || || |||| |||||| | || ||||| |||||||| ||||| |||||||||||| | ||||||||||||||||| ||||| |
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| T |
9477218 |
atatcagttatatgtgaagtttggtttgccttttcttggatcttggatcagttccccaagtggcttcctgtgaaccgtgaaacatatctggacag |
9477312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 441
Target Start/End: Complemental strand, 44377666 - 44377540
Alignment:
| Q |
315 |
gcagttgattatccagtggataaggtttcctgctacgtatcagatgacggcgctgctatgttgacattggaagctcttgctcagacatcagagtttgcga |
414 |
Q |
| |
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||||| |||||||| ||||| || || | ||||| || ||||| ||||| || |||||| | ||||| ||||| ||| | | || ||||||||||| | |
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| T |
44377666 |
gcagtagattatccggtggaaaaagtggcgtgctatgtctcagacgacggtgcagctatgctaacatttgaagccctttcagaaacttcagagtttgcaa |
44377567 |
T |
|
| Q |
415 |
gaaaatgggttcctttctgcaagaagt |
441 |
Q |
| |
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||||||||||||| ||||||||||||| |
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|
| T |
44377566 |
gaaaatgggttccattctgcaagaagt |
44377540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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