View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13181_low_12 (Length: 514)
Name: NF13181_low_12
Description: NF13181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13181_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 385; Significance: 0; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 10 - 410
Target Start/End: Complemental strand, 13073012 - 13072612
Alignment:
| Q |
10 |
aagaatatcaaaatctgtctccaaaagaaccatttgattccatagtgggaagtagaatattagaagcagcagcagataaagtggttcaacaatttgaagt |
109 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13073012 |
aagaaaatcaaaatctgtctccaaaagaaccatttgattccatagtgggaagtagaatattagaagcagcagcagataaagtggttcaacaatttgaagt |
13072913 |
T |
|
| Q |
110 |
taaaggagaagacaaaacaaagaaaaaggactccaaaatgtctgttcaagagtcagaagaaagtaaaacacgcaacgaagttgaacaatgcataatcaaa |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
13072912 |
taaaggagaagacaaaacaaagaaaaaggactccaaaatgtctgttcaagagtcagaagaaagtaaaacacgcaaagaagttgaacaatgcataatcaaa |
13072813 |
T |
|
| Q |
210 |
aatgaggaacaagaagaaggtaaagatgaaacaagtggacggaaaaaggacaatgaaattccaaagggagaagaagagaagtatgtggaaagacacattc |
309 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13072812 |
gatgaggaacaagaagaagataaagatgaaacaagtggacggaaaaaggacaatgaaattccaaagggagaagaagagaagtatgtggaaagacacattc |
13072713 |
T |
|
| Q |
310 |
atgtactagaagaaaccgtttcgaaagaggtgaatactccggtaccctagagtttttggttggatatcatacacaacattcaatcatttaatgccatgta |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13072712 |
atgtactagaagaaaccgtttcgaaagaggtgaatactccggtaccctagagtttttggttggatatcatacacaacattcaatcatttaatgccatgta |
13072613 |
T |
|
| Q |
410 |
g |
410 |
Q |
| |
|
| |
|
|
| T |
13072612 |
g |
13072612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 10 - 410
Target Start/End: Complemental strand, 13077216 - 13076816
Alignment:
| Q |
10 |
aagaatatcaaaatctgtctccaaaagaaccatttgattccatagtgggaagtagaatattagaagcagcagcagataaagtggttcaacaatttgaagt |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13077216 |
aagaaaatcaaaatctgtctccaaaagaaccatttgattccatagtgggaagtagaatattagaagcagcagcagataaagtggttcaacaatttgaagt |
13077117 |
T |
|
| Q |
110 |
taaaggagaagacaaaacaaagaaaaaggactccaaaatgtctgttcaagagtcagaagaaagtaaaacacgcaacgaagttgaacaatgcataatcaaa |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
13077116 |
taaaggagaagacaaaacaaagaaaaaggactccaaaatgtctgttcaagagtcagaagaaagtaaaacacgcaaagaagttgaacaatgcataatcaaa |
13077017 |
T |
|
| Q |
210 |
aatgaggaacaagaagaaggtaaagatgaaacaagtggacggaaaaaggacaatgaaattccaaagggagaagaagagaagtatgtggaaagacacattc |
309 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13077016 |
gatgaggaacaagaagaagataaagatgaaacaagtggacggaaaaaggacaatgaaattccaaagggagaagaagagaagtatgtggaaagacacattc |
13076917 |
T |
|
| Q |
310 |
atgtactagaagaaaccgtttcgaaagaggtgaatactccggtaccctagagtttttggttggatatcatacacaacattcaatcatttaatgccatgta |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13076916 |
atgtactagaagaaaccgtttcgaaagaggtgaatactccggtaccctagagtttttggttggatatcatacacaacattcaatcatttaatgccatgta |
13076817 |
T |
|
| Q |
410 |
g |
410 |
Q |
| |
|
| |
|
|
| T |
13076816 |
g |
13076816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 13065410 - 13065260
Alignment:
| Q |
68 |
attagaagcagcagcagataaagtggttcaacaatttgaagttaaaggagaagacaaaacaaagaaaaaggactccaaaatgtctgttcaagagtcagaa |
167 |
Q |
| |
|
||||||||| | ||||||||||| || |||||||||||||||| ||| | |||| ||||||||||||||||||||||||||| ||||||||||||| | |
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|
| T |
13065410 |
attagaagctgtagcagataaagcggctcaacaatttgaagttgaagaaaaagagaaaacaaagaaaaaggactccaaaatggatgttcaagagtcaaca |
13065311 |
T |
|
| Q |
168 |
gaaagtaaaacacgcaacgaagttgaacaatgcataatcaaaaatgaggaa |
218 |
Q |
| |
|
||||||||||| | || ||||||||| |||||||||||||| | |||||| |
|
|
| T |
13065310 |
aaaagtaaaacaggaaaagaagttgaagaatgcataatcaaagacgaggaa |
13065260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 13072164 - 13072014
Alignment:
| Q |
68 |
attagaagcagcagcagataaagtggttcaacaatttgaagttaaaggagaagacaaaacaaagaaaaaggactccaaaatgtctgttcaagagtcagaa |
167 |
Q |
| |
|
||||||||| | ||||||||||| || |||||||||||||||| ||| | |||| ||||||||||||||||||||||||||| ||||||||||||| | |
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|
| T |
13072164 |
attagaagctgtagcagataaagcggctcaacaatttgaagttgaagaaaaagagaaaacaaagaaaaaggactccaaaatggatgttcaagagtcaaca |
13072065 |
T |
|
| Q |
168 |
gaaagtaaaacacgcaacgaagttgaacaatgcataatcaaaaatgaggaa |
218 |
Q |
| |
|
||||||||||| | || ||||||||| |||||||||||||| | |||||| |
|
|
| T |
13072064 |
aaaagtaaaacaggaaaagaagttgaagaatgcataatcaaagacgaggaa |
13072014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 13076368 - 13076218
Alignment:
| Q |
68 |
attagaagcagcagcagataaagtggttcaacaatttgaagttaaaggagaagacaaaacaaagaaaaaggactccaaaatgtctgttcaagagtcagaa |
167 |
Q |
| |
|
||||||||| | ||||||||||| || |||||||||||||||| ||| | |||| ||||||||||||||||||||||||||| ||||||||||||| | |
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|
| T |
13076368 |
attagaagctgtagcagataaagaggctcaacaatttgaagttgaagaaaaagagaaaacaaagaaaaaggactccaaaatggatgttcaagagtcaaca |
13076269 |
T |
|
| Q |
168 |
gaaagtaaaacacgcaacgaagttgaacaatgcataatcaaaaatgaggaa |
218 |
Q |
| |
|
||||||||||| | || ||||||||| |||||||||||||| | |||||| |
|
|
| T |
13076268 |
aaaagtaaaacaggaaaagaagttgaagaatgcataatcaaagacgaggaa |
13076218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 164
Target Start/End: Complemental strand, 13064866 - 13064797
Alignment:
| Q |
95 |
tcaacaatttgaagttaaaggagaagacaaaacaaagaaaaaggactccaaaatgtctgttcaagagtca |
164 |
Q |
| |
|
|||||||||||||||| || ||||||| ||||||||||||| ||| |||||||| ||||||||||||| |
|
|
| T |
13064866 |
tcaacaatttgaagttgaaagagaagaaaaaacaaagaaaagggaatccaaaatagatgttcaagagtca |
13064797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 223 - 314
Target Start/End: Complemental strand, 13065237 - 13065149
Alignment:
| Q |
223 |
aagaaggtaaagatgaaacaagtggacggaaaaaggacaatgaaattccaaagggagaagaagagaagtatgtggaaagacacattcatgta |
314 |
Q |
| |
|
||||||||||| |||||||| |||| |||||||| |||||||||| |||||| | |||||||||| | |||||||| |||||||||||| |
|
|
| T |
13065237 |
aagaaggtaaaagtgaaacaactggatggaaaaagcacaatgaaatcccaaag---gtagaagagaagaaagtggaaaggcacattcatgta |
13065149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 164
Target Start/End: Complemental strand, 13071620 - 13071551
Alignment:
| Q |
95 |
tcaacaatttgaagttaaaggagaagacaaaacaaagaaaaaggactccaaaatgtctgttcaagagtca |
164 |
Q |
| |
|
|||||||||||||||| || ||||||| ||||||||||||| ||| |||||||| ||||||||||||| |
|
|
| T |
13071620 |
tcaacaatttgaagttgaaagagaagaaaaaacaaagaaaagggaatccaaaatagatgttcaagagtca |
13071551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 223 - 314
Target Start/End: Complemental strand, 13071991 - 13071903
Alignment:
| Q |
223 |
aagaaggtaaagatgaaacaagtggacggaaaaaggacaatgaaattccaaagggagaagaagagaagtatgtggaaagacacattcatgta |
314 |
Q |
| |
|
||||||||||| |||||||| |||| |||||||| |||||||||| |||||| | |||||||||| | |||||||| |||||||||||| |
|
|
| T |
13071991 |
aagaaggtaaaagtgaaacaactggatggaaaaagcacaatgaaatcccaaag---gtagaagagaagaaagtggaaaggcacattcatgta |
13071903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 13072413 - 13072360
Alignment:
| Q |
95 |
tcaacaatttgaagttaaaggagaagacaaaacaaagaaaaaggactccaaaat |
148 |
Q |
| |
|
||||||| |||||||| |||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
13072413 |
tcaacaacttgaagttgaaggagaagaaaaaacaaagaaaaaggaatccaaaat |
13072360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 164
Target Start/End: Complemental strand, 13075824 - 13075755
Alignment:
| Q |
95 |
tcaacaatttgaagttaaaggagaagacaaaacaaagaaaaaggactccaaaatgtctgttcaagagtca |
164 |
Q |
| |
|
|||||||||||||||| || ||||||| ||||||||||||| ||| |||||||| ||||||||||||| |
|
|
| T |
13075824 |
tcaacaatttgaagttgaaagagaagaaaaaacaaagaaaagggaatccaaaatagatgttcaagagtca |
13075755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 223 - 314
Target Start/End: Complemental strand, 13076195 - 13076107
Alignment:
| Q |
223 |
aagaaggtaaagatgaaacaagtggacggaaaaaggacaatgaaattccaaagggagaagaagagaagtatgtggaaagacacattcatgta |
314 |
Q |
| |
|
||||||||||| |||||||| |||| |||||||| |||||||||| |||||| | |||||||||| | |||||||| |||||||||||| |
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|
| T |
13076195 |
aagaaggtaaaagtgaaacaactggatggaaaaagcacaatgaaatcccaaag---gtagaagagaagaaagtggaaaggcacattcatgta |
13076107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 13076617 - 13076564
Alignment:
| Q |
95 |
tcaacaatttgaagttaaaggagaagacaaaacaaagaaaaaggactccaaaat |
148 |
Q |
| |
|
||||||| |||||||| |||||||||| ||||||||||||| ||| |||||||| |
|
|
| T |
13076617 |
tcaacaacttgaagttgaaggagaagaaaaaacaaagaaaatggaatccaaaat |
13076564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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