View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13181_low_13 (Length: 508)

Name: NF13181_low_13
Description: NF13181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13181_low_13
NF13181_low_13
[»] chr5 (12 HSPs)
chr5 (14-494)||(41286351-41286834)
chr5 (23-182)||(41316351-41316510)
chr5 (23-192)||(31188371-31188540)
chr5 (26-178)||(41328321-41328473)
chr5 (23-181)||(41310611-41310769)
chr5 (23-181)||(41324420-41324578)
chr5 (24-178)||(41332332-41332486)
chr5 (23-128)||(31225273-31225378)
chr5 (67-175)||(41337304-41337412)
chr5 (23-116)||(31178402-31178495)
chr5 (23-181)||(41366511-41366666)
chr5 (197-264)||(4209918-4209986)
[»] chr4 (1 HSPs)
chr4 (69-181)||(17249070-17249182)
[»] chr6 (3 HSPs)
chr6 (246-392)||(2401881-2402029)
chr6 (199-264)||(2401804-2401870)
chr6 (201-264)||(17545311-17545375)
[»] chr7 (3 HSPs)
chr7 (297-378)||(42424446-42424528)
chr7 (344-391)||(42424192-42424239)
chr7 (204-264)||(42424577-42424638)
[»] chr1 (1 HSPs)
chr1 (292-371)||(43473281-43473360)
[»] chr8 (2 HSPs)
chr8 (246-371)||(5021746-5021862)
chr8 (198-270)||(35213373-35213446)
[»] chr3 (3 HSPs)
chr3 (277-386)||(8895911-8896019)
chr3 (197-268)||(31311326-31311398)
chr3 (202-262)||(55378742-55378803)
[»] chr2 (1 HSPs)
chr2 (199-264)||(27277547-27277613)


Alignment Details
Target: chr5 (Bit Score: 434; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 14 - 494
Target Start/End: Original strand, 41286351 - 41286834
Alignment:
Q  14 agaccaaacttgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacagg 113  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  41286351 agaccaaacttgccagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctaattgatgttcttctcaagattcaacagg 41286450  T
Q  114 aaagtgagcactcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaactaaccatgttaataattttagggttaattat 213  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41286451 aaagtgagcactcataacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaactaaccatgttaataattttagggttaattat 41286550  T
Q  214 gtttttgatcccctaaatatacatactattgattttagtccccctaaaattctccatctatggaattggtccctgctattaactcctctttaacggtgtt 313  Q
    | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41286551 gcttttgatcccctaaatatacatactattgattttagtcctcctaaaattctccatctatggaattggtccctgctgttaactcctctttaacggtgtt 41286650  T
Q  314 gatgtggcaacgccacatgtgcataccaaatgatgtggcactgccacatggatttttactttgctgacgtggacttttttaaagatttcctgaagaag-- 411  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||      
T  41286651 gatgtggcaacgccacatgtgcataccaaatgacgtggcactgccacatggatttttactttgctgacgtggatttttttaaagatttcctgaagaagat 41286750  T
Q  412 -aaaaataatattatcttaactaatcattgtatttggagagaatataaaaattataacttattttttagctgtgatgtgtggaa 494  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41286751 caaaaataatattatcttaactaatcattgtatttggagagaatataaaaattataacttattttttagctgtgatgtgtggaa 41286834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 23 - 182
Target Start/End: Original strand, 41316351 - 41316510
Alignment:
Q  23 ttgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagc 122  Q
    |||||||||||||| || ||||| ||||| | ||||| |||||||||||| ||||||||||||||  ||||||||||||||||||||||||||| | | |    
T  41316351 ttgcaagacatcatcgacgatcacaaaagcattcacaaggaagaaagcaatgatgaagatctagtagatgttcttctcaagattcaacaggaaaattatc 41316450  T
Q  123 actcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaac 182  Q
    ||||||||||||| || |||||||| ||| ||||| || ||||||||||||||| |||||    
T  41316451 actcacaacatcctttaactgatgacaatataaaatcaatcatccaggttagtccacaac 41316510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 31188540 - 31188371
Alignment:
Q  23 ttgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagc 122  Q
    |||||||| ||||| | |||||||||||  | ||||| |||||||||||| ||||||||||||||| ||  ||||||||||||||||||||||| ||| |    
T  31188540 ttgcaagatatcatcgttgatcataaaaacattcacaaggaagaaagcaaggatgaagatctagttgatactcttctcaagattcaacaggaaaatgatc 31188441  T
Q  123 actcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaactaaccatgtt 192  Q
    |||||||  |||| || |||||| | ||| | |||||| |||| | |||| ||||||||| || ||||||    
T  31188440 actcacataatccattaactgataacaatatgaaagcaatcattctggttcgtctacaaccaaacatgtt 31188371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 26 - 178
Target Start/End: Original strand, 41328321 - 41328473
Alignment:
Q  26 caagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagcact 125  Q
    ||||||||||| || ||||| | ||| | ||||| ||||| |||||| ||||||||||||||  ||||||||||||||||||||||||||| | | ||||    
T  41328321 caagacatcatcgacgatcacagaagtattcacaaggaagcaagcaatgatgaagatctagtagatgttcttctcaagattcaacaggaaaattatcact 41328420  T
Q  126 cacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtcta 178  Q
    || ||||||| || || ||||| ||| | ||| || |||||||||||||||||    
T  41328421 cagaacatcctttaaccgatgacaatatgaaatcaatcatccaggttagtcta 41328473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 23 - 181
Target Start/End: Original strand, 41310611 - 41310769
Alignment:
Q  23 ttgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagc 122  Q
    |||||||||||||| || ||||| ||||| | || || |||||| ||||| ||||||||||||||  ||||||||||||||||| ||||||||| | | |    
T  41310611 ttgcaagacatcatcgacgatcacaaaagcattcgcaaggaagatagcaatgatgaagatctagtagatgttcttctcaagattaaacaggaaaattatc 41310710  T
Q  123 actcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaa 181  Q
    ||||| ||||||| || || ||||| ||| | ||| || |||||||||| |||||||||    
T  41310711 actcagaacatcctttaacggatgacaatatgaaatcaatcatccaggtaagtctacaa 41310769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 23 - 181
Target Start/End: Original strand, 41324420 - 41324578
Alignment:
Q  23 ttgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagc 122  Q
    ||||||||||| || || ||||| ||||| | ||||| |||||| ||||| || ||| |||||||  ||||||||||||||||||||||||||| | | |    
T  41324420 ttgcaagacattatcgacgatcacaaaagcattcacaaggaagatagcaatgaagaatatctagtagatgttcttctcaagattcaacaggaaaattatc 41324519  T
Q  123 actcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaa 181  Q
    ||||||||||||| || || ||||| ||| ||||  || ||||||||||||||| ||||    
T  41324520 actcacaacatcctttaaccgatgacaatataaagtcaatcatccaggttagtcaacaa 41324578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 24 - 178
Target Start/End: Original strand, 41332332 - 41332486
Alignment:
Q  24 tgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagca 123  Q
    ||||||||||||| || ||||| | ||| | ||||| ||||| |||||| ||||||||||||||  ||||||||||||||||||||||||||| | |  |    
T  41332332 tgcaagacatcatcgacgatcacagaagcattcacaaggaagcaagcaacgatgaagatctagtagatgttcttctcaagattcaacaggaaaattatta 41332431  T
Q  124 ctcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtcta 178  Q
    |||| ||||||| || || ||||| ||| | ||| || |||||||||||||||||    
T  41332432 ctcagaacatcctttaaccgatgacaatatgaaatcaatcatccaggttagtcta 41332486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 23 - 128
Target Start/End: Original strand, 31225273 - 31225378
Alignment:
Q  23 ttgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagc 122  Q
    |||||||| ||||| |||||||||||||  | ||||| |||||||||||| ||||||||||||||| ||  |||||||||||| |||||||||| |||||    
T  31225273 ttgcaagatatcatcgatgatcataaaaacattcacaaggaagaaagcaaggatgaagatctagttgatactcttctcaagatacaacaggaaaatgagc 31225372  T
Q  123 actcac 128  Q
    ||||||    
T  31225373 actcac 31225378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 67 - 175
Target Start/End: Original strand, 41337304 - 41337412
Alignment:
Q  67 aagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagcactcacaacatcccttgactgatgataatttaaaagcagtcatc 166  Q
    |||||| |||||||| |||||| |||||||||||||| ||||||| |||| ||  ||||||||||| |||||||||||||| ||| ||||| |||||||     
T  41337304 aagcaaggatgaagacctagttgatgttcttctcaaggttcaacatgaaaatgttcactcacaacaacccttgactgatgaaaatataaaatcagtcatt 41337403  T
Q  167 caggttagt 175  Q
    |||||||||    
T  41337404 caggttagt 41337412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 23 - 116
Target Start/End: Complemental strand, 31178495 - 31178402
Alignment:
Q  23 ttgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaa 116  Q
    |||||||| ||| | |||||||||||||  | ||||| |||||||||||| ||||||||||||||| |||  ||| ||||||||||||||||||    
T  31178495 ttgcaagatatcgtcgatgatcataaaaacattcacaaggaagaaagcaaggatgaagatctagttgatgcacttatcaagattcaacaggaaa 31178402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 181
Target Start/End: Original strand, 41366511 - 41366666
Alignment:
Q  23 ttgcaagacatcattgatgatcataaaagaagtcacatggaagaaagcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagc 122  Q
    |||||||| ||||| |||||||| ||||| ||||||| | |||  || ||  |||| ||||||||  |||||||||||||||||||||  | ||   | |    
T  41366511 ttgcaagagatcatcgatgatcacaaaagtagtcacaagaaagctaggaagaatgatgatctagtagatgttcttctcaagattcaacgtgtaa---atc 41366607  T
Q  123 actcacaacatcccttgactgatgataatttaaaagcagtcatccaggttagtctacaa 181  Q
    ||||||||||||||||||| || || ||| ||||| | |||||||||||||||| ||||    
T  41366608 actcacaacatcccttgaccgacgacaatataaaatcggtcatccaggttagtcaacaa 41366666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 264
Target Start/End: Original strand, 4209918 - 4209986
Alignment:
Q  197 attttagggttaattatgtttttgatcccc-taaatatacatactattgattttagtccccctaaaatt 264  Q
    |||| |||||||| ||| |||||||||||  |||||||||| ||| || ||||||||||| ||||||||    
T  4209918 atttaagggttaaatatatttttgatccctataaatatacaaactttttattttagtccctctaaaatt 4209986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 69 - 181
Target Start/End: Complemental strand, 17249182 - 17249070
Alignment:
Q  69 gcaaagatgaagatctagttcatgttcttctcaagattcaacaggaaagtgagcactcacaacatcccttgactgatgataatttaaaagcagtcatcca 168  Q
    |||| ||||||||||||||| ||| |||| ||||||||||||| ||||||||  || ||||| || | ||||||||||| ||| ||||| || |||||||    
T  17249182 gcaaggatgaagatctagttgatgctcttatcaagattcaacaagaaagtgattacccacaaaattcattgactgatgacaatataaaatcaatcatcca 17249083  T
Q  169 ggttagtctacaa 181  Q
    |||||||||||||    
T  17249082 ggttagtctacaa 17249070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 246 - 392
Target Start/End: Original strand, 2401881 - 2402029
Alignment:
Q  246 ttttagtccccctaaaattctccatctatggaattggtccctgctattaactcctctttaacggtgttgatgtggcaacgccacatgtgcataccaaatg 345  Q
    |||||||||| |||||||||| ||| |||| |||||||||||||| |||||| |||||||| | || | |  ||| ||| ||||||||||||||||||||    
T  2401881 ttttagtccctctaaaattcttcatttatgaaattggtccctgctgttaacttctctttaatgttgctaacatgggaacaccacatgtgcataccaaatg 2401980  T
Q  346 atgtggcactgccacatgga---tttttactttgctgacgtggacttttt 392  Q
    | |||||| | |||| || |   ||||||||||||||||||||| |||||    
T  2401981 acgtggcagt-ccacgtgaattttttttactttgctgacgtggaattttt 2402029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 264
Target Start/End: Original strand, 2401804 - 2401870
Alignment:
Q  199 tttagggttaattatgtttttgatcccc-taaatatacatactattgattttagtccccctaaaatt 264  Q
    |||||||||||||||||||||  ||||| |||||||||  | | |||||||||| ||||||||||||    
T  2401804 tttagggttaattatgttttttgtccccttaaatataccaattgttgattttagcccccctaaaatt 2401870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 264
Target Start/End: Complemental strand, 17545375 - 17545311
Alignment:
Q  201 tagggttaattatgtttttgatccc-ctaaatatacatactattgattttagtccccctaaaatt 264  Q
    ||||||||| |||||||||||||||  |||||||||| ||| ||  |||||||||| ||||||||    
T  17545375 tagggttaaatatgtttttgatccctataaatatacaaactttttgttttagtccctctaaaatt 17545311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 297 - 378
Target Start/End: Complemental strand, 42424528 - 42424446
Alignment:
Q  297 tcctctttaacggtg-ttgatgtggcaacgccacatgtgcataccaaatgatgtggcactgccacatggatttttactttgct 378  Q
    |||||||||| |||| |||| ||||||||||||||||||||||||||||||  ||||| |||||| |||||||||||||||||    
T  42424528 tcctctttaaaggtgcttgacgtggcaacgccacatgtgcataccaaatgacatggcattgccacgtggatttttactttgct 42424446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 344 - 391
Target Start/End: Original strand, 42424192 - 42424239
Alignment:
Q  344 tgatgtggcactgccacatggatttttactttgctgacgtggactttt 391  Q
    |||||||||||||| ||||||||||||||||||||| |||||| ||||    
T  42424192 tgatgtggcactgctacatggatttttactttgctggcgtggaatttt 42424239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 264
Target Start/End: Complemental strand, 42424638 - 42424577
Alignment:
Q  204 ggttaattatgtttttgatcccc-taaatatacatactattgattttagtccccctaaaatt 264  Q
    |||||||||| |||||||||||| ||||||||   ||| ||||||||||||| |||||||||    
T  42424638 ggttaattatatttttgatccccctaaatatatcaactgttgattttagtcctcctaaaatt 42424577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 292 - 371
Target Start/End: Complemental strand, 43473360 - 43473281
Alignment:
Q  292 ttaactcctctttaacggtgttgatgtggcaacgccacatgtgcataccaaatgatgtggcactgccacatggattttta 371  Q
    ||||||||||||||||| |  ||||||||||| ||||||||||||||| ||||||||||||| ||| || ||||||||||    
T  43473360 ttaactcctctttaacgatcctgatgtggcaatgccacatgtgcatactaaatgatgtggcaatgctacgtggattttta 43473281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 246 - 371
Target Start/End: Complemental strand, 5021862 - 5021746
Alignment:
Q  246 ttttagtccccctaaaattctccatctatggaattggtccctgctattaactcctctttaacggtgttgatgtggcaacgccacatgtgcataccaaatg 345  Q
    ||||||||| || ||||||||| || ||||||||||||| ||||| |||||||||||||||||||| ||        |||||||||||||||||||||||    
T  5021862 ttttagtcctcc-aaaattctctatttatggaattggtctctgctgttaactcctctttaacggtgctg--------acgccacatgtgcataccaaatg 5021772  T
Q  346 atgtggcactgccacatggattttta 371  Q
    |   |||| |||||| ||||||||||    
T  5021771 actgggcattgccacgtggattttta 5021746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 270
Target Start/End: Original strand, 35213373 - 35213446
Alignment:
Q  198 ttttagggttaattatgtttttgatcccc-taaatatacatactattgattttagtccccctaaaattctccat 270  Q
    |||||||||||| |||||||||| |||   |||||||||| ||| || ||||||||||| |||||||| |||||    
T  35213373 ttttagggttaaatatgtttttggtccttataaatatacaaactttttattttagtccctctaaaattttccat 35213446  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 277 - 386
Target Start/End: Complemental strand, 8896019 - 8895911
Alignment:
Q  277 aattggtccctgctattaactcctctttaacggtgttgatgtggcaacgccacatgtgcataccaaatgatgtggcactgccacatggatttttactttg 376  Q
    |||| |||||| || |||||||||||| |||| ||||||  || |||  ||| ||||||||||||||||||||||||||||||| || | ||| ||| ||    
T  8896019 aattagtccctactgttaactcctctt-aacgatgttgacatgacaataccatatgtgcataccaaatgatgtggcactgccacgtgaaatttgactgtg 8895921  T
Q  377 ctgacgtgga 386  Q
    ||||||||||    
T  8895920 ctgacgtgga 8895911  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 268
Target Start/End: Complemental strand, 31311398 - 31311326
Alignment:
Q  197 attttagggttaattatgtttttgatcccc-taaatatacatactattgattttagtccccctaaaattctcc 268  Q
    ||||||||||||| |||||||||| ||||  |||||||||| ||| || ||||||||||| ||||||||||||    
T  31311398 attttagggttaaatatgtttttggtccctataaatatacaaacttttcattttagtccctctaaaattctcc 31311326  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 55378742 - 55378803
Alignment:
Q  202 agggttaattatgtttttgatccc-ctaaatatacatactattgattttagtccccctaaaa 262  Q
    |||||||| |||||||||||||||  |||||||||| ||| || ||||||||||| ||||||    
T  55378742 agggttaaatatgtttttgatccctataaatatacaaacttttcattttagtccctctaaaa 55378803  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 264
Target Start/End: Original strand, 27277547 - 27277613
Alignment:
Q  199 tttagggttaattatgtttttgatcccc-taaatatacatactattgattttagtccccctaaaatt 264  Q
    ||||||||||| |||||||||| ||||| |||||||||| ||| ||  |||||||||| ||||||||    
T  27277547 tttagggttaaatatgtttttggtccccataaatatacaaacttttcgttttagtccctctaaaatt 27277613  T

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