View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13181_low_15 (Length: 452)
Name: NF13181_low_15
Description: NF13181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13181_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 19 - 436
Target Start/End: Original strand, 1411049 - 1411465
Alignment:
| Q |
19 |
gatctattgtaaggattgatctcttcaaccatttatttattaatttaaagtgacatgagattgaacttctgaccacatgcttaattaatgacctagcatt |
118 |
Q |
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| T |
1411049 |
gatctattgtaaggattgatctcttctatcatttatttattaatttaaagtgacatgagattaaacttctgaccacgtgcttaattaatgacctagcatt |
1411148 |
T |
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| Q |
119 |
tatcatttgtgtattggttatttaaaactaaaatggatgcgaaattaaatctgaggaagaatttctatacaaacttgtcaaggaataaacatgattcata |
218 |
Q |
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| T |
1411149 |
tatcatttgtgtattggttatttaaaattaaaatggatgcgaaattaaatctgaggaagaatttctatacaaacttgtcaaggaataaacatgattcata |
1411248 |
T |
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| Q |
219 |
atcatttaacaactattatccatctaaactatagtactttttggagttggaaagaaactaagaaaataaactcctttgttagagaggggagactagcaac |
318 |
Q |
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| T |
1411249 |
atcatttaacaactattattcatctaaactatagtactttttggagttggaaataaactaagaaaataaactcc-ttgttagagaggggagactagcaac |
1411347 |
T |
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| Q |
319 |
ataacaaattaataatgacttttgataatgaaaattatatatttcctatttacccaatagcaaaatgttactcttagtgtttgtaactgtttcccacatt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1411348 |
ataacaaattaataatgacttttgataatgaaaattatatatttcctatttacccaatagcaaaatgttactcttagtgtttgtaactgtttcccacatt |
1411447 |
T |
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| Q |
419 |
ttgtaagcagttgatgat |
436 |
Q |
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| T |
1411448 |
ttgtaagcagttgatgat |
1411465 |
T |
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