View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13181_low_17 (Length: 440)

Name: NF13181_low_17
Description: NF13181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13181_low_17
NF13181_low_17
[»] chr2 (32 HSPs)
chr2 (1-421)||(9321553-9321973)
chr2 (61-277)||(10372588-10372804)
chr2 (54-276)||(9292638-9292857)
chr2 (7-164)||(9329418-9329575)
chr2 (7-253)||(9060271-9060517)
chr2 (7-212)||(8572675-8572879)
chr2 (9-212)||(9316793-9316999)
chr2 (54-227)||(10353901-10354074)
chr2 (54-171)||(10336623-10336740)
chr2 (54-166)||(10348620-10348732)
chr2 (54-163)||(12018134-12018243)
chr2 (54-167)||(7114865-7114978)
chr2 (54-171)||(9275335-9275452)
chr2 (54-171)||(9283394-9283511)
chr2 (54-171)||(12005385-12005502)
chr2 (87-212)||(14551091-14551215)
chr2 (65-164)||(9357935-9358034)
chr2 (252-420)||(9329177-9329339)
chr2 (54-163)||(12011813-12011922)
chr2 (322-418)||(10353701-10353797)
chr2 (54-163)||(7612716-7612825)
chr2 (322-417)||(9357761-9357856)
chr2 (84-163)||(9365415-9365494)
chr2 (322-420)||(10348360-10348458)
chr2 (57-116)||(8578748-8578807)
chr2 (318-420)||(9316606-9316708)
chr2 (315-420)||(10372439-10372544)
chr2 (54-159)||(11986745-11986850)
chr2 (316-368)||(7115100-7115152)
chr2 (261-357)||(9283589-9283679)
chr2 (54-154)||(17565334-17565434)
chr2 (322-355)||(8572959-8572992)
[»] chr3 (2 HSPs)
chr3 (54-420)||(37463076-37463451)
chr3 (54-128)||(39428733-39428807)
[»] scaffold0667 (2 HSPs)
scaffold0667 (54-181)||(5261-5388)
scaffold0667 (321-420)||(5055-5154)
[»] chr4 (3 HSPs)
chr4 (54-227)||(26575635-26575808)
chr4 (322-419)||(26575452-26575549)
chr4 (87-171)||(561982-562066)
[»] chr8 (1 HSPs)
chr8 (54-185)||(41965942-41966073)
[»] chr1 (2 HSPs)
chr1 (69-196)||(29452586-29452713)
chr1 (69-212)||(29467060-29467203)
[»] chr5 (1 HSPs)
chr5 (54-162)||(36225571-36225679)


Alignment Details
Target: chr2 (Bit Score: 413; Significance: 0; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 9321973 - 9321553
Alignment:
Q  1 aacgaaccttccttccaatggcgagtgatgttcctccgccggaattgttggaggaaatcctctcccgcttaccggtaaaatcacttctccaattccgatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9321973 aacgaaccttccttccaatggcgagtgatgttcctccgccggaattgttggaggaaatcctctcccgcttaccggtaaaatcacttctccaattccgatc 9321874  T
Q  101 aacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaattccctcagtcgatccttaatcattcaacacaaattc 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9321873 aacttctaaatcacttaaatccataatcgattctcaccacttcatcaaccttcatctcaaaaattccctcagtcgatccttaatcattcaacacaaattc 9321774  T
Q  201 gatctctaccaactccaaatcgatgatcatgatgatttctctaaatccatgatgattccactcaaccatcctttcaccaccaacatcactcctgtcacac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9321773 gatctctaccaactccaaatcgatgatcatgatgatttctctaaatccatgatgattccactcaaccatcctttcaccaccaaaatcactcctgtcacac 9321674  T
Q  301 gtaatagaaccagaaccatggctcttatcggttcctgtaacggcctcctcgccatctcccacggccaactggctttcaatcatcctaacaaccccaacga 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9321673 gtaatagaaccagaaccatggctcttatcggttcctgtaacggcctcctcgccatctcccacggccaactggctttcaatcatcctaacaaccccaacga 9321574  T
Q  401 aatcacaatctggaaccctag 421  Q
    |||||||||||||||||||||    
T  9321573 aatcacaatctggaaccctag 9321553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 61 - 277
Target Start/End: Complemental strand, 10372804 - 10372588
Alignment:
Q  61 tctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaa 160  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||  |||||||||| ||| | |||||||||||||| ||| |    
T  10372804 tctcccgcttaccggtaaaatcacttctccgattccgatcaacttcaaaatcatttaaatcattaatcgattcccacaaattcatcaaccttcacctcca 10372705  T
Q  161 aaattccctcagtcgatccttaatcattcaacacaaattcgatctctaccaactccaaatcgat---gatcatgatgatttctctaaatccatgatgatt 257  Q
    ||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||   ||| |||||||||||||||||||   || ||||    
T  10372704 aaattccctcaatcgatccttaatccttcaacgcaaattcgatctctaccaactccaaatcgatgacgatgatgatgatttctctaaatc---gaggatt 10372608  T
Q  258 ccactcaaccatcctttcac 277  Q
    ||||||||||||||||||||    
T  10372607 ccactcaaccatcctttcac 10372588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 54 - 276
Target Start/End: Complemental strand, 9292857 - 9292638
Alignment:
Q  54 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 153  Q
    |||||| |||||||| |||| |||||||||||||||  ||||||||||| ||| ||||||||||||||| |||||||||| |||  |||||  |||||||    
T  9292857 gaaatcttctcccgcgtaccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaatcgattctcacagcttcactaaccttc 9292758  T
Q  154 atctcaaaaattccctcagtcgatccttaatcattcaacacaaattcgatctctaccaactccaaatcgatgatcatgatgatttctctaaatccatgat 253  Q
    | ||||||||||||||||  |||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||   |||    
T  9292757 acctcaaaaattccctcaaccgatccttaatccttcgacacaaattcgatctctaccaactccaaatcgatgatgatgatgatttctccaagtc---gat 9292661  T
Q  254 gattccactcaaccatcctttca 276  Q
     ||||||||||||||||||||||    
T  9292660 tattccactcaaccatcctttca 9292638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 7 - 164
Target Start/End: Complemental strand, 9329575 - 9329418
Alignment:
Q  7 ccttccttccaatggcgagtgatgttcctccgccggaattgttggaggaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttc 106  Q
    ||||||||||||||||| ||||||||| || ||||||||||||   |||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  9329575 ccttccttccaatggcgggtgatgttcttctgccggaattgttaacggaaatcctctcccgcttaccggtaaaatcacttctccgattccgttcaacttc 9329476  T
Q  107 taaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaat 164  Q
     |||||||||||||||||||||||||| ||| ||||||  |||||||| |||||||||    
T  9329475 aaaatcacttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaat 9329418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 7 - 253
Target Start/End: Original strand, 9060271 - 9060517
Alignment:
Q  7 ccttccttccaatggcgagtgatgttcctccgccggaattgttggaggaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttc 106  Q
    |||||||||||||||||  |||||||| |||||||||| |  | |  |||||| ||||||||||||||||  |||||||||||| |||||||||||||||    
T  9060271 ccttccttccaatggcggctgatgttcttccgccggaaatacttgccgaaatcttctcccgcttaccggttcaatcacttctccgattccgatcaacttc 9060370  T
Q  107 taaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaa---aattccctcagtcgatccttaatcattcaacacaaattcgat 203  Q
     ||||||||||||||| |||||||||| ||| ||||||  |||||| | ||||||   ||| |||||| |||||   ||||| ||| |||||||| ||||    
T  9060371 aaaatcacttaaatccttaatcgattctcacaacttcactaacctttacctcaaaaataatcccctcaatcgatttataatccttcgacacaaatccgat 9060470  T
Q  204 ctctaccaactccaaatcgatgatcatgatgatttctctaaatccatgat 253  Q
    ||||||||||||||| ||||||   ||||||||||||||||||| |||||    
T  9060471 ctctaccaactccaagtcgatg---atgatgatttctctaaatcaatgat 9060517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 7 - 212
Target Start/End: Original strand, 8572675 - 8572879
Alignment:
Q  7 ccttccttccaatggcgagtgatgttcctccgccggaattgttggaggaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttc 106  Q
    ||||||||||||||||| ||||||||| |||| ||||| |  |    |||||| |||||||| |||| ||||| |||||||||| |||||||||||||||    
T  8572675 ccttccttccaatggcgggtgatgttcttccgtcggaaatagtcactgaaatcttctcccgcataccagtaaa-tcacttctccgattccgatcaacttc 8572773  T
Q  107 taaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaattccctcagtcgatccttaatcattcaacacaaattcgatctc 206  Q
     |||||||||||||| ||||||||||| ||| |||||| ||||||||| |||||||||||||||| ||| ||||||||||||| || ||| | |||| ||    
T  8572774 aaaatcacttaaatctataatcgattcccacaacttcaccaaccttcacctcaaaaattccctcaatcgttccttaatcattcgacgcaactacgatatc 8572873  T
Q  207 taccaa 212  Q
    ||||||    
T  8572874 taccaa 8572879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 9 - 212
Target Start/End: Complemental strand, 9316999 - 9316793
Alignment:
Q  9 ttccttccaatggcgagtgatgttcctccgccggaattgttggaggaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttcta 108  Q
    |||||||||||||||  ||| | || |||||||||| |  | |  |||||| |||||| |||||| |||||||||||||||| ||||||||||||||| |    
T  9316999 ttccttccaatggcggctgacggtcttccgccggaaatactcgccgaaatcttctcccacttaccagtaaaatcacttctccgattccgatcaacttcaa 9316900  T
Q  109 aatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaa---aattccctcagtcgatccttaatcattcaacacaaattcgatct 205  Q
    |||||||||||||  |||| ||||| ||| |||||||||||||||| ||||||   |||||||||| ||||||||||||| ||||  |||||| ||| ||    
T  9316899 aatcacttaaatctttaatagattctcacaacttcatcaaccttcacctcaaaaataattccctcaatcgatccttaatccttcattacaaatccgaact 9316800  T
Q  206 ctaccaa 212  Q
    |||||||    
T  9316799 ctaccaa 9316793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 54 - 227
Target Start/End: Complemental strand, 10354074 - 10353901
Alignment:
Q  54 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 153  Q
    |||||||| |||||||||||||||| ||||||||||  ||||||||||||||| |||||| |||||||| ||||||||||  || | |||||||||||||    
T  10354074 gaaatcctttcccgcttaccggtaatatcacttctcagattccgatcaacttcaaaatcatttaaatccctaatcgattccaacaaattcatcaaccttc 10353975  T
Q  154 atctcaaaaattccctcagtcgatccttaatcattcaacacaaattcgatctctaccaactccaaatcgatgat 227  Q
    | |||| |||||||| || || |||||||||  ||| |  |||||||||| |||||||| |  |||||||||||    
T  10353974 acctcagaaattcccccaatcaatccttaattcttcgattcaaattcgatatctaccaaattaaaatcgatgat 10353901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 54 - 171
Target Start/End: Complemental strand, 10336740 - 10336623
Alignment:
Q  54 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 153  Q
    |||||| ||||||| |||||||||||||||||||||| |||||||||||| || ||||||||||||||| |||||||||| ||| | |||||||||||||    
T  10336740 gaaatcttctcccgtttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattctcacaaattcatcaaccttc 10336641  T
Q  154 atctcaaaaattccctca 171  Q
    | ||  ||||||||||||    
T  10336640 accttcaaaattccctca 10336623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 54 - 166
Target Start/End: Complemental strand, 10348732 - 10348620
Alignment:
Q  54 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 153  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||| |||||||||| | | | |||||||||||||    
T  10348732 gaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattccctcaaattcatcaaccttc 10348633  T
Q  154 atctcaaaaattc 166  Q
    | || ||||||||    
T  10348632 acctaaaaaattc 10348620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 54 - 163
Target Start/End: Original strand, 12018134 - 12018243
Alignment:
Q  54 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 153  Q
    |||||| ||||||||||||| |||||||||||||| | |||||| |||||||| |||||||||||||||||||||||||| ||| |||||| ||| ||||    
T  12018134 gaaatcttctcccgcttaccagtaaaatcacttcttcgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttcaccaatcttc 12018233  T
Q  154 atctcaaaaa 163  Q
    | ||||||||    
T  12018234 aactcaaaaa 12018243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 54 - 167
Target Start/End: Original strand, 7114865 - 7114978
Alignment:
Q  54 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 153  Q
    |||||| |||| ||| |||| |||  ||||||||| | ||||||||||||||| ||||||||||||||| |||||||||| ||| | |||||||||||||    
T  7114865 gaaatcttctctcgcctaccagtacgatcacttcttcgattccgatcaacttcaaaatcacttaaatccttaatcgattcccacaaattcatcaaccttc 7114964  T
Q  154 atctcaaaaattcc 167  Q
    |||| |||||||||    
T  7114965 atcttaaaaattcc 7114978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 54 - 171
Target Start/End: Complemental strand, 9275452 - 9275335
Alignment:
Q  54 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 153  Q
    |||||| ||||||| ||||| ||| |||||||||||  |||||||||||  || ||||||||||||||  | || ||||| ||| |||||||||||||||    
T  9275452 gaaatcttctcccggttaccagtacaatcacttctctgattccgatcaatctcaaaatcacttaaatcgttgattgattcccacaacttcatcaaccttc 9275353  T
Q  154 atctcaaaaattccctca 171  Q
    ||||||||||||||||||    
T  9275352 atctcaaaaattccctca 9275335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 54 - 171
Target Start/End: Original strand, 9283394 - 9283511
Alignment:
Q  54 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 153  Q
    |||||| ||||| ||||||| || |||||||| |||| |||||||||||||||||||||||||  |||| |||| ||||| ||| | |||||||||||||    
T  9283394 gaaatcttctcctgcttaccagttaaatcactactccgattccgatcaacttctaaatcacttcgatccctaatagattctcacaaattcatcaaccttc 9283493  T
Q  154 atctcaaaaattccctca 171  Q
    | ||||||| ||||||||    
T  9283494 acctcaaaagttccctca 9283511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 54 - 171
Target Start/End: Original strand, 12005385 - 12005502
Alignment:
Q  54 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 153  Q
    |||||| |||||||||||||   | |||||||||||| |||||| ||||||||  |||| |||||||||||||||||||| ||| |||||| ||||||||    
T  12005385 gaaatcttctcccgcttacctccacaatcacttctccgattccgctcaacttcagaatcgcttaaatccataatcgattctcacaacttcaccaaccttc 12005484  T
Q  154 atctcaaaaattccctca 171  Q
    |||| |||||||| ||||    
T  12005485 atctaaaaaattctctca 12005502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 87 - 212
Target Start/End: Complemental strand, 14551215 - 14551091
Alignment:
Q  87 ctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaattccctcagtcgatccttaatca 186  Q
    |||||||||||||||||||| ||||||||| ||||| |||||||||| ||| |||||||||| ||||| || ||||||||||||| | | |||||||||     
T  14551215 ctccaattccgatcaacttcaaaatcacttcaatccctaatcgattcccacaacttcatcaaacttcacct-aaaaattccctcaattgttccttaatcc 14551117  T
Q  187 ttcaacacaaattcgatctctaccaa 212  Q
    ||| |||||| | | |||||||||||    
T  14551116 ttcgacacaagtccaatctctaccaa 14551091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 65 - 164
Target Start/End: Complemental strand, 9358034 - 9357935
Alignment:
Q  65 ccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaat 164  Q
    ||||||||| ||||||||||||||||  ||  |||||||||| ||||||||||||||| |||||||||| ||| ||||||| |||||||| |||||||||    
T  9358034 ccgcttaccagtaaaatcacttctccggtttggatcaacttcaaaatcacttaaatccttaatcgattctcacaacttcataaaccttcacctcaaaaat 9357935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 252 - 420
Target Start/End: Complemental strand, 9329339 - 9329177
Alignment:
Q  252 atgattccactcaaccatcctttcaccaccaacatcactcctgtcacacgtaatagaaccagaaccatggctcttatcggttcctgtaacggcctcctcg 351  Q
    ||||||||||||||||||||||||| |||||||||  |||||||||| |||||      ||| | ||||| |||||||||||| || ||||||||| | |    
T  9329339 atgattccactcaaccatcctttcagcaccaacattgctcctgtcacgcgtaa------cagcaacatgggtcttatcggttcatgcaacggcctcattg 9329246  T
Q  352 ccatctcccacggccaactggctttcaatcatcctaacaaccccaacgaaatcacaatctggaacccta 420  Q
    | |||||| | |||||| | ||||| |   | ||||||  |||||||||||||||||||||||||||||    
T  9329245 ctatctcctatggccaaatcgcttttagggaccctaacggccccaacgaaatcacaatctggaacccta 9329177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 54 - 163
Target Start/End: Original strand, 12011813 - 12011922
Alignment:
Q  54 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 153  Q
    |||||| ||||||||||||    | |||||||||||| |||||| |||||||| |||||||||||||||||||||||||| ||| |||||| ||| ||||    
T  12011813 gaaatcttctcccgcttacatccacaatcacttctccgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttcaccaatcttc 12011912  T
Q  154 atctcaaaaa 163  Q
    | ||||||||    
T  12011913 acctcaaaaa 12011922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 322 - 418
Target Start/End: Complemental strand, 10353797 - 10353701
Alignment:
Q  322 ctcttatcggttcctgtaacggcctcctcgccatctcccacggccaactggctttcaatcatcctaacaaccccaacgaaatcacaatctggaaccc 418  Q
    ||||||||||||| |||||||||||||||||||| |||||||||  | | |||||||  |||||||||  |||||||||||||||||| ||||||||    
T  10353797 ctcttatcggttcatgtaacggcctcctcgccatgtcccacggcgtaatagctttcacgcatcctaacgcccccaacgaaatcacaatatggaaccc 10353701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 54 - 163
Target Start/End: Complemental strand, 7612825 - 7612716
Alignment:
Q  54 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 153  Q
    ||||||||||| |||||||||||| || | || |||| ||||||||||| ||||||||| ||||||||| |||| ||||| ||| ||||||  |||||||    
T  7612825 gaaatcctctctcgcttaccggtacaaaccctcctccgattccgatcaatttctaaatcgcttaaatccttaattgattcccacaacttcacaaaccttc 7612726  T
Q  154 atctcaaaaa 163  Q
    | ||||||||    
T  7612725 acctcaaaaa 7612716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 322 - 417
Target Start/End: Complemental strand, 9357856 - 9357761
Alignment:
Q  322 ctcttatcggttcctgtaacggcctcctcgccatctcccacggccaactggctttcaatcatcctaacaaccccaacgaaatcacaatctggaacc 417  Q
    ||||||||||||| |||||||||||||||||||||||| | ||| || | |||||||  |||||||||  | ||||||||||| ||||||||||||    
T  9357856 ctcttatcggttcatgtaacggcctcctcgccatctccaatggcgaaatcgctttcaggcatcctaacgccgccaacgaaatctcaatctggaacc 9357761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 84 - 163
Target Start/End: Complemental strand, 9365494 - 9365415
Alignment:
Q  84 cttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaa 163  Q
    ||||||| |||||||||||| || |||||||||||||||||||||||||| |||  ||||| |||||| |||||||||||    
T  9365494 cttctccgattccgatcaacctcaaaatcacttaaatccataatcgattctcacaccttcaccaacctccatctcaaaaa 9365415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 322 - 420
Target Start/End: Complemental strand, 10348458 - 10348360
Alignment:
Q  322 ctcttatcggttcctgtaacggcctcctcgccatctcc-cacggccaactggctttcaatcatcctaacaaccccaacgaaatcacaatctggaacccta 420  Q
    ||||||||||||| |||||||||||||||||||||||| || ||  || | | |||||  ||||||||||||| ||||||||||||||||||||||||||    
T  10348458 ctcttatcggttcatgtaacggcctcctcgccatctccacaggggtaa-tcgttttcacgcatcctaacaacctcaacgaaatcacaatctggaacccta 10348360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 57 - 116
Target Start/End: Original strand, 8578748 - 8578807
Alignment:
Q  57 atcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcactt 116  Q
    ||||||||||||||||||||| |||| ||||||| ||||||||||| |||||||||||||    
T  8578748 atcctctcccgcttaccggtacaatcccttctccgattccgatcaatttctaaatcactt 8578807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 318 - 420
Target Start/End: Complemental strand, 9316708 - 9316606
Alignment:
Q  318 atggctcttatcggttcctgtaacggcctcctcgccatctcccacggccaactggctttcaatcatcctaacaaccccaacgaaatcacaatctggaacc 417  Q
    ||||||||| ||||||| ||||||||||| |||||||| ||| | || ||| | |||||||  |||||| ||  | ||||||||||||||||||||||||    
T  9316708 atggctcttctcggttcatgtaacggccttctcgccatttccaatggtcaaatcgctttcatgcatccttacggcgccaacgaaatcacaatctggaacc 9316609  T
Q  418 cta 420  Q
    |||    
T  9316608 cta 9316606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 315 - 420
Target Start/End: Complemental strand, 10372544 - 10372439
Alignment:
Q  315 accatggctcttatcggttcctgtaacggcctcctcgccatctcccacggccaactggctttcaatcatcctaacaaccccaacgaaatcacaatctgga 414  Q
    |||||| ||| ||||||||| |||||||||||||||||||||| | ||||| || | ||||||| | | |||    ||||||| ||||||||| ||||||    
T  10372544 accatgactcgtatcggttcatgtaacggcctcctcgccatctgcaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctgga 10372445  T
Q  415 acccta 420  Q
    ||||||    
T  10372444 acccta 10372439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 159
Target Start/End: Original strand, 11986745 - 11986850
Alignment:
Q  54 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 153  Q
    |||||| ||||||||||||    | |||||||||||| |||||| ||||||||  |||| |||||||||||||| ||||| ||| |||||| ||| ||||    
T  11986745 gaaatcttctcccgcttacatccacaatcacttctccgattccgctcaacttcagaatcgcttaaatccataattgattctcacaacttcaccaatcttc 11986844  T
Q  154 atctca 159  Q
    | ||||    
T  11986845 acctca 11986850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 7115100 - 7115152
Alignment:
Q  316 ccatggctcttatcggttcctgtaacggcctcctcgccatctcccacggccaa 368  Q
    |||||| |||||||||||| |||||||||||||||||||||||| | ||||||    
T  7115100 ccatggatcttatcggttcatgtaacggcctcctcgccatctccaatggccaa 7115152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 357
Target Start/End: Original strand, 9283589 - 9283679
Alignment:
Q  261 ctcaaccatcctttcaccaccaacatcactcctgtcacacgtaatagaaccagaaccatggctcttatcggttcctgtaacggcctcctcgccatct 357  Q
    |||||||||||||||||||||||||||  |||| |||| | |||      ||| | || ||||||||| ||||| ||||||||||||||||||||||    
T  9283589 ctcaaccatcctttcaccaccaacatcgatcctttcacgcttaa------cagcatcaaggctcttattggttcatgtaacggcctcctcgccatct 9283679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 154
Target Start/End: Original strand, 17565334 - 17565434
Alignment:
Q  54 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 153  Q
    ||||||||||| |||||||| ||| |||| || |||| | |||||||||| || |||||||||||||   |||| ||||| ||  |||||| ||||||||    
T  17565334 gaaatcctctctcgcttaccagtacaatccctcctccgactccgatcaacgtcgaaatcacttaaatttttaattgattcccataacttcaccaaccttc 17565433  T
Q  154 a 154  Q
    |    
T  17565434 a 17565434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 355
Target Start/End: Original strand, 8572959 - 8572992
Alignment:
Q  322 ctcttatcggttcctgtaacggcctcctcgccat 355  Q
    ||||||||||||| ||||||||||||||||||||    
T  8572959 ctcttatcggttcatgtaacggcctcctcgccat 8572992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 54 - 420
Target Start/End: Complemental strand, 37463451 - 37463076
Alignment:
Q  54 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 153  Q
    |||||||||||||| ||||| ||| |||||||||||| ||||||||||||||| ||||||||||||||  |||||||||| ||| |||||||||||||||    
T  37463451 gaaatcctctcccgtttaccagtagaatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatcgattctcacaacttcatcaaccttc 37463352  T
Q  154 atctcaaaaattccctcagtcgatccttaatcattcaacacaaattcgatctctaccaactccaaatcgatgatcatgatgatttctcta----aatcca 249  Q
    ||||||||||| |||||| || |||| ||||||||| | |||| | |||| |||||||||||||||||||||   || | ||||||||||    |||| |    
T  37463351 atctcaaaaatcccctcaatcaatccgtaatcattcgaaacaactccgatatctaccaactccaaatcgatg---ataacgatttctctaatcgaatcaa 37463255  T
Q  250 t--gatgattccactcaaccatccttt---------caccaccaacatcactcctgtcacacgtaatagaaccagaaccatggctcttatcggttcctgt 338  Q
    |  ||| ||||||||||||||||||||         || | ||||||||  ||||  ||||||   | ||  ||| |||||||||||||||||||| |||    
T  37463254 ttcgattattccactcaaccatcctttcaaaggtaacagccccaacatcgatccttacacacggcgt-ga--cagcaccatggctcttatcggttcatgt 37463158  T
Q  339 aacggcctcctcgccatctcccacggccaactggctttcaatcatcctaacaaccccaacgaaatcacaatctggaacccta 420  Q
    |||||||||||||| |||||| | |||||| | |||||||  |||||||||  | |||||||||||||||||||||||||||    
T  37463157 aacggcctcctcgctatctccaatggccaaatcgctttcacgcatcctaacgccgccaacgaaatcacaatctggaacccta 37463076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 39428807 - 39428733
Alignment:
Q  54 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatc 128  Q
    |||||||||||||||||||||||  |||| || |||||||||||||||||||| |||| | |||||||| |||||    
T  39428807 gaaatcctctcccgcttaccggtgcaatccctcctccaattccgatcaacttcaaaatgagttaaatccttaatc 39428733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 54 - 181
Target Start/End: Complemental strand, 5388 - 5261
Alignment:
Q  54 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 153  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||    
T  5388 gaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatccataatcgattctcacaacttcatcaaccttc 5289  T
Q  154 atctcaaaaattccctcagtcgatcctt 181  Q
    | | |||||||||||||| | |||||||    
T  5288 accgcaaaaattccctcaatagatcctt 5261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 321 - 420
Target Start/End: Complemental strand, 5154 - 5055
Alignment:
Q  321 gctcttatcggttcctgtaacggcctcctcgccatctcccacggccaactggctttcaatcatcctaacaaccccaacgaaatcacaatctggaacccta 420  Q
    |||||||||||||| |||||||||||||||||| | ||| ||||| || | ||| |||  |||||||||  | |||||||||||||||||||||||||||    
T  5154 gctcttatcggttcatgtaacggcctcctcgccgtttccaacggcgaaatcgctctcagacatcctaacgccgccaacgaaatcacaatctggaacccta 5055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 54 - 227
Target Start/End: Complemental strand, 26575808 - 26575635
Alignment:
Q  54 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 153  Q
    |||||| ||||||| |||||||||| ||||||||||| ||||||||||||||| ||||||||||||| | ||||||||||  || | |||||||||||||    
T  26575808 gaaatcttctcccgtttaccggtaatatcacttctccgattccgatcaacttcaaaatcacttaaattcttaatcgattcctacaaattcatcaaccttc 26575709  T
Q  154 atctcaaaaattccctcagtcgatccttaatcattcaacacaaattcgatctctaccaactccaaatcgatgat 227  Q
    | |||| |||||||| || ||||||||||||| ||| |  |||||||||| ||||||||||  ||||| |||||    
T  26575708 acctcagaaattcccccaatcgatccttaatccttcgattcaaattcgatatctaccaacttgaaatcaatgat 26575635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 322 - 419
Target Start/End: Complemental strand, 26575549 - 26575452
Alignment:
Q  322 ctcttatcggttcctgtaacggcctcctcgccatctcccacggccaactggctttcaatcatcctaacaaccccaacgaaatcacaatctggaaccct 419  Q
    ||||||||||||| |||||||||||||||||||| |||||||||  | |||||||||  ||||| |||  ||||||||||||| ||||||||||||||    
T  26575549 ctcttatcggttcatgtaacggcctcctcgccatgtcccacggcgtaatggctttcacgcatcccaacgcccccaacgaaatcgcaatctggaaccct 26575452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 171
Target Start/End: Complemental strand, 562066 - 561982
Alignment:
Q  87 ctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaattccctca 171  Q
    |||| |||||||| || ||| ||||  |||||||||||||||||||| ||| ||||||  |||||||| |||||||| |||||||    
T  562066 ctccgattccgattaagttcaaaatggcttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaactccctca 561982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 54 - 185
Target Start/End: Original strand, 41965942 - 41966073
Alignment:
Q  54 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 153  Q
    |||||| ||||||  ||||||||||||||| |||||| |||||||||||| || |||||||||  |||| |||||||||| ||| |||||||||||||||    
T  41965942 gaaatcttctccctattaccggtaaaatcagttctccgattccgatcaacctcgaaatcacttcgatccttaatcgattcccacaacttcatcaaccttc 41966041  T
Q  154 atctcaaaaattccctcagtcgatccttaatc 185  Q
    | |||| ||| ||||||| |||||||||||||    
T  41966042 acctcagaaaatccctcaatcgatccttaatc 41966073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 69 - 196
Target Start/End: Original strand, 29452586 - 29452713
Alignment:
Q  69 ttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaattccc 168  Q
    ||||||||| |||| || |||| |||||| ||||| || ||||||||| ||||| |||||||||| ||| |||||||||| ||||| ||| |||||||||    
T  29452586 ttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacctccaaaattccc 29452685  T
Q  169 tcagtcgatccttaatcattcaacacaa 196  Q
    ||| ||| ||||||||| ||| ||||||    
T  29452686 tcaatcgttccttaatccttcgacacaa 29452713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 69 - 212
Target Start/End: Original strand, 29467060 - 29467203
Alignment:
Q  69 ttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttcatctcaaaaattccc 168  Q
    ||||||||| |||| || |||| |||||| ||||| || ||||||||| ||||| |||||||||| ||| |||||||||| ||||| |||  ||||||||    
T  29467060 ttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatccctaatcgattcccacaacttcatcaaacttcacctccgaaattccc 29467159  T
Q  169 tcagtcgatccttaatcattcaacacaaattcgatctctaccaa 212  Q
    ||| ||| | ||||||| ||| |||||| | |||| ||||||||    
T  29467160 tcaatcgtttcttaatccttcgacacaactccgatttctaccaa 29467203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 54 - 162
Target Start/End: Complemental strand, 36225679 - 36225571
Alignment:
Q  54 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattcgcaccacttcatcaaccttc 153  Q
    |||||||||||||||||||  ||  |||| || |||| ||||||||||||||| ||||||||||||||  |||||||||||||| ||||||  || ||||    
T  36225679 gaaatcctctcccgcttactagtgcaatccctcctccgattccgatcaacttcaaaatcacttaaatcgttaatcgattcgcacaacttcactaatcttc 36225580  T
Q  154 atctcaaaa 162  Q
    | |||||||    
T  36225579 acctcaaaa 36225571  T

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