View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13181_low_18 (Length: 398)
Name: NF13181_low_18
Description: NF13181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13181_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 25 - 391
Target Start/End: Complemental strand, 8322848 - 8322487
Alignment:
| Q |
25 |
ccatttgatccataagatcgtctatccttagaactgatccataaaatttaagcatacgatcaaggtgtcaagattttgagaaggaacagacagttaagat |
124 |
Q |
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| T |
8322848 |
ccatttgatccataagatcgtctatccttagaactgatccataaaatttaagcatacgatcaaagtgtcaagattttgagaaggaacagacagttaagat |
8322749 |
T |
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| Q |
125 |
tctaatgattaatgtannnnnnnnnnngtttcaacgttaaacaataatttttcttacatattaatgttaattgtttattgtaggccaaaatgtttcacta |
224 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
8322748 |
tctagcaattaatgt--ctttttttttgtttcaacgttaaacaataatttttcttacatattaatgttaattgattattgtaggccaaaatgtttcacta |
8322651 |
T |
|
| Q |
225 |
catgagatttttgtttgcacagttattccatattattaatgcaaacttaatgccacactatacgagattatgcatctaataactctacttaatattgtct |
324 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
8322650 |
catgagatttttgtttgcacagttattccatattattaatgcaaacttaatgccacattatacgagattatgcatc---taactctacttaatattgtct |
8322554 |
T |
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| Q |
325 |
tccaattaaaattattatcagcagtgctaagtcccttccaagagataatactaacacaggttctgct |
391 |
Q |
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| T |
8322553 |
tccaattaaaattattatcagcagtactaagtcccttccaagagataatactaacagaggttatgct |
8322487 |
T |
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