View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13181_low_22 (Length: 376)
Name: NF13181_low_22
Description: NF13181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13181_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 8 - 360
Target Start/End: Original strand, 34943286 - 34943645
Alignment:
| Q |
8 |
ggctatcaaatctcttcatttgtaaaccgttggtttatacaaccatctcatcatcataatcatagtcataataataatcacaaaaccaataagaggttca |
107 |
Q |
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| T |
34943286 |
ggctatcaaatctcttcatttgtaaaccgttggtttatacaaccatctcatcatcataatcatagtcataataataatcacaaaaccaataagaggttca |
34943385 |
T |
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| Q |
108 |
acatgccgaagggtcgaccgatttccttacaggtttgattaatgcttagttaccatatatatggcctgttcttattaattagtgtttatgtgtgtgttta |
207 |
Q |
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| T |
34943386 |
acatgccgaagggtcgaccgatttccttacaggtttgattaatgcttagttaccatatatatggcctgttcttattaattagtgtttatgtgtgtgttta |
34943485 |
T |
|
| Q |
208 |
catatgtatatatactg--------tatacataatacaccggtccaagtatgattaagctacttatttttaacgaaaggattgttttgcaagttatcaag |
299 |
Q |
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||||| |||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34943486 |
catatatatata-agtgtgtgtgtatatacataatacaccggtccaagtatgattaagctacttatttttaacgaaaggattgttttgcaagttatcaag |
34943584 |
T |
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| Q |
300 |
agagctttgttaaaaagaaatattgtttcttccattataacttaaaaattgttaaaatttt |
360 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34943585 |
agagctttgttaaaaagaaatattgtttcttccaatataacttaaaaattgttaaaatttt |
34943645 |
T |
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