View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13181_low_23 (Length: 370)
Name: NF13181_low_23
Description: NF13181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13181_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-166; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 1903084 - 1903445
Alignment:
| Q |
1 |
tagtattatgcaaaatgagagatattatacattaaaaattaaagtccataaagtatatgaatattgacacagtcacgaacaccagatataacactgacac |
100 |
Q |
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| T |
1903084 |
tagtattatgcaaaatgagagatattatacattaaaaattaaagtccataaagtatatgaatattgacacagtcacgaacaccatatataacactgacac |
1903183 |
T |
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| Q |
101 |
taggacatagacgccaatattaatttgatgaaatggaaaagattggatgtaacacgcatgtctatgtctgacaccagcacgtgccaaacactaatgcctg |
200 |
Q |
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| T |
1903184 |
taggacatagacatcaataataatttgatgaaatggaaaagattggatgtaacatgcatgtctatgtctgacaccagcacgtgccaaacactaatgcctg |
1903283 |
T |
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| Q |
201 |
ttgaacactgaacacgccttcaatgtgaagtatcggtcggtgctgcatagtatttactagaatgtgtcacaattggcttccttacaatgaaatatttttt |
300 |
Q |
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| T |
1903284 |
ttgaacactgaacacgccttcaatgtgaagta----tcggtgctgcatagtatttactagaatgtgtcacaattggcttccttacaatgaaatatttttt |
1903379 |
T |
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| Q |
301 |
ca-------ttatttaatgagatcatcaaaattttagtactgaaaagtttaagttcgtttattcat |
359 |
Q |
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| T |
1903380 |
catttcttgttatttaatgagatcatcaaaattttagtactgaaaagtttcagttcctttattcat |
1903445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 1907317 - 1907678
Alignment:
| Q |
1 |
tagtattatgcaaaatgagagatattatacattaaaaattaaagtccataaagtatatgaatattgacacagtcacgaacaccagatataacactgacac |
100 |
Q |
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| T |
1907317 |
tagtattatgcaaaatgagagatattatacattaaaaattaaagtccataaagtatatgaatattgacacagtcacgaacaccatatataacactgacac |
1907416 |
T |
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| Q |
101 |
taggacatagacgccaatattaatttgatgaaatggaaaagattggatgtaacacgcatgtctatgtctgacaccagcacgtgccaaacactaatgcctg |
200 |
Q |
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| T |
1907417 |
taggacatagacatcaataataatttgatgaaatggaaaagattggatgtaacatgcatgtctatgtctgacaccagcacgtgccaaacactaatgcctg |
1907516 |
T |
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| Q |
201 |
ttgaacactgaacacgccttcaatgtgaagtatcggtcggtgctgcatagtatttactagaatgtgtcacaattggcttccttacaatgaaatatttttt |
300 |
Q |
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| T |
1907517 |
ttgaacactgaacacgccttcaatgtgaagta----tcggtgctgcatagtatttactagaatgtgtcacaattggcttccttacaatgaaatatttttt |
1907612 |
T |
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| Q |
301 |
ca-------ttatttaatgagatcatcaaaattttagtactgaaaagtttaagttcgtttattcat |
359 |
Q |
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| T |
1907613 |
catttcttgttatttaatgagatcatcaaaattttagtactgaaaagtttcagttcctttattcat |
1907678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 131 - 265
Target Start/End: Original strand, 1897876 - 1898006
Alignment:
| Q |
131 |
aaatggaaaagattggatgtaacacgcatgtctatgtctgacaccagcacgtgccaaacactaatgcctgttgaacactgaacacgccttcaatgtgaag |
230 |
Q |
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||||||||| ||||| || ||||| ||||||||||||| ||||||||||||||||| ||| || | ||||| |||||||||||| |||||| ||||| |
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| T |
1897876 |
aaatggaaatgattgaatttaacatgcatgtctatgtccgacaccagcacgtgccagacatcgatacatgttggacactgaacacgttttcaatatgaag |
1897975 |
T |
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| Q |
231 |
tatcggtcggtgctgcatagtatttactagaatgt |
265 |
Q |
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| T |
1897976 |
ta----tcagtgctacatagtatttactagaatgt |
1898006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 303 - 359
Target Start/End: Original strand, 1898089 - 1898145
Alignment:
| Q |
303 |
ttatttaatgagatcatcaaaattttagtactgaaaagtttaagttcgtttattcat |
359 |
Q |
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| T |
1898089 |
ttatttaatgggatcatcaaaattttagtactgaaaagtttcagttcctttattcat |
1898145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 1897627 - 1897676
Alignment:
| Q |
63 |
attgacacagtcacgaacaccagatataacactgacactaggacatagac |
112 |
Q |
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|||||||||||||||||||||||| |||| ||||||||||| || ||||| |
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| T |
1897627 |
attgacacagtcacgaacaccagacataatactgacactagcacgtagac |
1897676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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