View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13181_low_25 (Length: 356)
Name: NF13181_low_25
Description: NF13181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13181_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 66 - 353
Target Start/End: Original strand, 16965328 - 16965615
Alignment:
| Q |
66 |
attagtaagtaatcttaaagagctgatctcattagtcattttcataagctcataatctactggaagtttaaaatctttgatttgatcatagcaccttttc |
165 |
Q |
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| T |
16965328 |
attagtaagcaatcttaaagagctgatctcattagtcattttcataagctgataatctactggaagtttaaaatctttgatttgatcatagcaccttttc |
16965427 |
T |
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| Q |
166 |
ctcaatctttcactccaatccaacctaaaacataatcccaggtcaagagattcaagaagagaacattcattaagaatggcaagaaccccatcagatgaga |
265 |
Q |
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| T |
16965428 |
ctcaatctttcactccaatccaacctaaaacataatcccaggtcaagagattcaagaagagaacattcattaagaatggcaagaaccccatcagatgaga |
16965527 |
T |
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| Q |
266 |
gattatttccagaaattttaagatgacgtaatcgaggcattgatttagcgatagccaacaactcatcatcggattttccagttttcat |
353 |
Q |
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| T |
16965528 |
gattatttccagcaattttaagatgacgtaatcgaggcattgatttagcgatagcgaacagctcatcatcggattttccagttttcat |
16965615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 119 - 335
Target Start/End: Original strand, 16954802 - 16955021
Alignment:
| Q |
119 |
aatctactggaagtttaaaatctttgatttgatcatagcaccttttcctcaatctttcactccaatccaacctaaaacataatcccaggtcaagagattc |
218 |
Q |
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| T |
16954802 |
aatctattggaagtttacaatctttgatttgatcataacaccttttcctcaaactttcactcaaatccaaactaaaacataatcctaggtcaagcgattc |
16954901 |
T |
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| Q |
219 |
aagaagagaacattcattaagaatggca---agaaccccatcagatgagagattatttccagaaattttaagatgacgtaatcgaggcattgatttagcg |
315 |
Q |
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| T |
16954902 |
aagaagaggacatccatttagaatggcaattagaatcccatcagatgagagcttatttcgagaaattttaagatgacgtagtcgaggcattgttttagcg |
16955001 |
T |
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| Q |
316 |
atagccaacaactcatcatc |
335 |
Q |
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| T |
16955002 |
acagccaaaaactcgtcatc |
16955021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 16965241 - 16965287
Alignment:
| Q |
17 |
acctctcatgaagatagtatgagaatgcaagtactctggttaaaaaa |
63 |
Q |
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| T |
16965241 |
acctctcatgaagatagtatgagaatacaagtactctggttaaaaaa |
16965287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 25783914 - 25783966
Alignment:
| Q |
207 |
gtcaagagattcaagaagagaacattcattaagaatggcaagaaccccatcag |
259 |
Q |
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| T |
25783914 |
gtcaagacactcaagaagaggacacccatcaagaatggcaagaaccccatcag |
25783966 |
T |
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