View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13181_low_27 (Length: 339)
Name: NF13181_low_27
Description: NF13181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13181_low_27 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 9 - 339
Target Start/End: Complemental strand, 48696129 - 48695791
Alignment:
| Q |
9 |
gaacctgtggtggagatgtaatttctgtaaacgattatgtagtttgaatcacctgctttaacagcacagcacaacagtcacataatggaaagactctaaa |
108 |
Q |
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| T |
48696129 |
gaacctgtggtggagatgtaatttctgtaaacgattatgtagtttgaatcacctgctttaacagcacagcacaacagtcacataatggaaagactctaaa |
48696030 |
T |
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| Q |
109 |
ctgtttaacttaacagttactacttgttttgtgagagatttgatttgcttgggggtatcattcggaaacttgaatccacttgttttgaaagattatttct |
208 |
Q |
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| T |
48696029 |
ctgtttaacgtaacagttactacttgttttgtgagagatttgatttgcttgggggtatcatttggaaacttgaatccacttgttttgaaagattatttct |
48695930 |
T |
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| Q |
209 |
atttgcacgcaaaaccttgagagaagatgatgtcttgcttgatggcaaagagtgcacttgtatggcccgtgtgtgagtgagagag--------agagggc |
300 |
Q |
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| T |
48695929 |
atttgcacgcaaaaccttgagagaagatgatgtcttgcttgatggcaaagagtgcacttgtatggcccgtgtgtgagtgagagagagagagagagagggc |
48695830 |
T |
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| Q |
301 |
caagaagacggtggtcacagacagaagacagtaccattt |
339 |
Q |
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| T |
48695829 |
caagaagacggtggtcacagacagaagacagtaccattt |
48695791 |
T |
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