View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13181_low_28 (Length: 332)
Name: NF13181_low_28
Description: NF13181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13181_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 15 - 316
Target Start/End: Original strand, 48669176 - 48669477
Alignment:
| Q |
15 |
agaaggaagcaccgttcagggaaagaagattgaggaaaaaatcaagaaagaagccagtccagtagataggaatagcaaagaaagagatgaatttgcgaac |
114 |
Q |
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| T |
48669176 |
agaaggaagcaccgttaagggaaagaagattgaggaaaaaatcaagaaagaagccagtccagtagataggaatagcaaagaaagagatgaatttgcgaac |
48669275 |
T |
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| Q |
115 |
aagaatggaaacgaggatgacccatctccaactccaattgcaatcaacagatgaagatgaagaatggtcatcatcatcgacaaagcggtgaaagtcacga |
214 |
Q |
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| T |
48669276 |
aagaatggaaacgaggatgacccatctccaactccaattgcaatcaacagatgaagatgaagaatggtcatcatcatcgacaaagcggtcaaagtcacga |
48669375 |
T |
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| Q |
215 |
ccaagaaaagcataacggaataattctacaaaaccacccttctcaggacgcacaatcagatacctcctccactccgaatccatcacttcacatgcaaatg |
314 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48669376 |
ccaagaaaagcataacggaataactctacaaaaccacccttctcaggacgcacaatcagatacctcctccactccgaatccatcacttcacatgcaaatg |
48669475 |
T |
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| Q |
315 |
gt |
316 |
Q |
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|| |
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| T |
48669476 |
gt |
48669477 |
T |
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