View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13181_low_29 (Length: 321)
Name: NF13181_low_29
Description: NF13181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13181_low_29 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 20 - 260
Target Start/End: Complemental strand, 11720093 - 11719853
Alignment:
| Q |
20 |
ctataactattggcaatgcagtgtttggggctacacctgaaatagcaagtgaagtgctcatcaaggcttttaaattggacaagaatgccatcaattactt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11720093 |
ctataactattggcaatgcagtgtttggggctacacctgaaatagcaagtgaagtgctcatcaaggcttttaaattggacaagaatgccatcaattactt |
11719994 |
T |
|
| Q |
120 |
acagtcaaagttttagaatattgggagggaaattcagctctttttgtttgtttgtatgtttcattcgtctgtcttccttatttcctaatgtattttatta |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11719993 |
acagtcaaagttttagaatattgggagggaaattcagctctttttgtttgtttgtatgtttcattcgtctgtcttccttatttcctaatgtattttatta |
11719894 |
T |
|
| Q |
220 |
tcattcatttgattctttcctaaaagtgtgggtatctaccg |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11719893 |
tcattcatttgattctttcctaaaagtgtgggcatctaccg |
11719853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 11729205 - 11728986
Alignment:
| Q |
20 |
ctataactattggcaatgcagtgtttggggctacacctgaaatagcaagtgaagtgctcatcaaggcttttaaattggacaagaatgccatcaattactt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||| ||| |||||||||||||||||| | ||| ||||||| |
|
|
| T |
11729205 |
ctataactattggcaatgcagtgtttggggctgcacctgaaatagctagtgaagttctcattaagtcttttaaattggacaagactacca---attactt |
11729109 |
T |
|
| Q |
120 |
acagtcaaagttttagaatattgggagggaaattcagctctttttgtttgtttgtatgtttcattcgtctgtcttccttatttcctaatgtattttatta |
219 |
Q |
| |
|
| ||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| |
|
|
| T |
11729108 |
gctgtccaagttttagaatattgggagggaa-ttcagctgtttttgtttgtttgtatgtttcatttgttggtcttccttatttcctatggtattttatta |
11729010 |
T |
|
| Q |
220 |
tcattcatttgattctttcctaaa |
243 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
11729009 |
tcattcatttgattctttcctaaa |
11728986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 11693889 - 11694053
Alignment:
| Q |
20 |
ctataactattggcaatgcagtgtttggggctacacctgaaatagcaagtgaagtgctcatcaaggcttttaaattggacaagaatgccatcaattactt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11693889 |
ctataactattggcaatgcagtgtttggggctacacctgaaatagctagcgaagttctcattaaggcttttcaattggacaagaatgccatcaattactt |
11693988 |
T |
|
| Q |
120 |
acagtcaaagttttagaatattgggagggaaattcagctctttttgtttgtttgtatgtttcattc |
185 |
Q |
| |
|
||||| ||||||||||||||||||| || ||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
11693989 |
gcagtcgaagttttagaatattgggaagg-aattcagctgtttttgtttgtttgtatgtttaattc |
11694053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 11680850 - 11680687
Alignment:
| Q |
20 |
ctataactattggcaatgcagtgtttggggctacacctgaaatagcaagtgaagtgctcatcaaggcttttaaattggacaagaatgccatcaattactt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| | ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11680850 |
ctataactattggcaatgcagtgtttggggctacacctgaaatagctagcgaagttctcattatggcttttcaattggacaagaatgccatcaattactt |
11680751 |
T |
|
| Q |
120 |
acagtcaaagttttagaatattgggagggaaattcagctctttttgtttgtttgtatgtttcatt |
184 |
Q |
| |
|
||||| |||||||| ||||||||||||| |||||| || ||||||||||||||||||||||||| |
|
|
| T |
11680750 |
gcagtcgaagttttaaaatattgggaggg-aattcaactgtttttgtttgtttgtatgtttcatt |
11680687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 20 - 138
Target Start/End: Complemental strand, 11671963 - 11671845
Alignment:
| Q |
20 |
ctataactattggcaatgcagtgtttggggctacacctgaaatagcaagtgaagtgctcatcaaggcttttaaattggacaagaatgccatcaattactt |
119 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || ||||||||| | |||| |||||||||||||| || || |
|
|
| T |
11671963 |
ctatcactattggcaatgcagtgtttggtgctacacctgaaatagctagtgaagtgcttattaaggcttttcagctggagaagaatgccatcaactattt |
11671864 |
T |
|
| Q |
120 |
acagtcaaagttttagaat |
138 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
11671863 |
gcagtctaagttttagaat |
11671845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 25 - 254
Target Start/End: Complemental strand, 7662055 - 7661827
Alignment:
| Q |
25 |
actattggcaatgcagtgtttggggctacacctgaaatagcaagtgaagtgctcatcaaggcttttaaattggacaagaatgccatcaattacttacagt |
124 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||| ||||| |||||||| || | ||||||||| |||||||||||| | ||||||||||| |||| |
|
|
| T |
7662055 |
actattggtaatgcaatgtttggggctacacctgagatagctagtgaagttcttgttaaggcttttcaattggacaagactattatcaattacttgcagt |
7661956 |
T |
|
| Q |
125 |
caaagttttagaatattgggagggaaattcagctctttttgtttgtttgtatgtttcattcgtctgtcttccttatttcctaatgtattttatta-tcat |
223 |
Q |
| |
|
|||||||||||| ||||||| | | ||| | | ||||||||||||||||||||||||| || | | ||| |||||||| ||||||||||| ||| |
|
|
| T |
7661955 |
caaagttttagattattgggtgtg--attttgatatttttgtttgtttgtatgtttcatttgttggcgcttcttgtttcctaaagtattttattacccat |
7661858 |
T |
|
| Q |
224 |
tcatttgattctttcctaaaagtgtgggtat |
254 |
Q |
| |
|
||||||||||||||||| ||| ||| ||||| |
|
|
| T |
7661857 |
tcatttgattctttcctgaaattgtaggtat |
7661827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University