View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13181_low_31 (Length: 319)
Name: NF13181_low_31
Description: NF13181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13181_low_31 |
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| [»] chr8 (1 HSPs) |
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| [»] chr5 (6 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 20 - 319
Target Start/End: Original strand, 44248109 - 44248408
Alignment:
| Q |
20 |
cctgcatgaccatctggtctcaataatgccaactttgttatatcaagcacctccaaatttaatccaatttgttgagcttttactttagcattttcagctt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44248109 |
cctgcatgaccatctggtctcaataatgccaactttgttatatcaagcacctccaaatttaatccaatttgttgagcttttactttagcattttcagctt |
44248208 |
T |
|
| Q |
120 |
cctctatctcaatacttcttatcttagcatccattccttcaagtttcttctcctcattcttatatggctcactctttgaacatgtaccacccttatccca |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44248209 |
cctctatctcaatacttcttatcttagcatccattccttcaagtttcttctcctcattcttatatggctcactctttgaacatgtaccacccttatccca |
44248308 |
T |
|
| Q |
220 |
atcaccttcaaaatgagtaggtgagtatgttctcacaattacatcaattccattccctcttacaattttcttctcaattatgctattaagggtagtcctt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44248309 |
atcaccttcaaaatgagtaggtgagtatgttctcacaattacatcaattccattccctcttacaattttcttctcaattatgctattaagggtagtcctt |
44248408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 319
Target Start/End: Complemental strand, 15284453 - 15284152
Alignment:
| Q |
18 |
cacctgcatgaccatctggtctcaataatgccaactttgttatatcaagcacctccaaatttaatccaatttgttgagcttttactttagcattttcagc |
117 |
Q |
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|||| |||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||| ||||| ||||||| | |||||||||| | |
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| T |
15284453 |
caccagcatgaccatctggtctcaacaatgccaattttgttatatcaagcacctctaaatttaatccaaattgtttagcttttgccctagcattttccac |
15284354 |
T |
|
| Q |
118 |
ttcctctatctcaatacttcttatcttagcatccattccttcaagtttcttctcctcattcttatatggctcactctttgaacatgtaccacccttatcc |
217 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||| |
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| T |
15284353 |
ttcctctatctcaacacttcttatcttagcatccattccttcaagtttcttctcctcatttccatatggctctctctttgaacaagtaccacccttatcc |
15284254 |
T |
|
| Q |
218 |
caatcaccttcaaaatgagtaggtgagtatgttctcacaattacatcaattccattccctcttacaattttcttctcaattatgctattaagggtagtcc |
317 |
Q |
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||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| | || |||||| ||||||||||||||||||||||||||| |
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| T |
15284253 |
caaccaccttcaaaatgagtaggtgagtatgttctcacaatcacatcaattttattccctttaaccattttcctctcaattatgctattaagggtagtcc |
15284154 |
T |
|
| Q |
318 |
tt |
319 |
Q |
| |
|
|| |
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|
| T |
15284153 |
tt |
15284152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 117 - 318
Target Start/End: Original strand, 15287564 - 15287765
Alignment:
| Q |
117 |
cttcctctatctcaatacttcttatcttagcatccattccttcaagtttcttctcctcattcttatatggctcactctttgaacatgtaccacccttatc |
216 |
Q |
| |
|
|||| ||||||||||| ||||| |||| | ||||||||||| ||| | |||||||||| || |||| |||| | |||||||||| |||||| ||||||| |
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| T |
15287564 |
cttcttctatctcaatccttctaatctcaccatccattcctccaactatcttctcctcttttctataaggcttagtctttgaacaagtaccagccttatc |
15287663 |
T |
|
| Q |
217 |
ccaatcaccttcaaaatgagtaggtgagtatgttctcacaattacatcaattccattccctcttacaattttcttctcaattatgctattaagggtagtc |
316 |
Q |
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|||||||||||||||||||| |||||| ||||| | ||||| ||||| |||| ||| ||| | ||| |||| |||||||||| ||||||||||||||| |
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| T |
15287664 |
ccaatcaccttcaaaatgagcaggtgaaaatgttttaacaatcacatctattctatttcctttagcaactttcctctcaattatactattaagggtagtc |
15287763 |
T |
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| Q |
317 |
ct |
318 |
Q |
| |
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|| |
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|
| T |
15287764 |
ct |
15287765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 192 - 309
Target Start/End: Complemental strand, 15262787 - 15262670
Alignment:
| Q |
192 |
tctttgaacatgtaccacccttatcccaatcaccttcaaaatgagtaggtgagtatgttctcacaattacatcaattccattccctcttacaattttctt |
291 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||| |||||||||| |||||| | ||| |||||||||| |||||||||||| | | ||| |||| | |
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| T |
15262787 |
tctttgaacatgttccagccttatcccaatcaccatcaaaatgagaaggtgaaaaagttttcacaattactccaattccattccttttagcaactttcct |
15262688 |
T |
|
| Q |
292 |
ctcaattatgctattaag |
309 |
Q |
| |
|
||||||||||| |||||| |
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| T |
15262687 |
ctcaattatgccattaag |
15262670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 117 - 235
Target Start/End: Original strand, 15265418 - 15265536
Alignment:
| Q |
117 |
cttcctctatctcaatacttcttatcttagcatccattccttcaagtttcttctcctcattcttatatggctcactctttgaacatgtaccacccttatc |
216 |
Q |
| |
|
|||| ||||||||||| |||| |||| | ||||||||||||||| ||||||||| |||| |||| |||| | | |||| ||| | |||| ||||||| |
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| T |
15265418 |
cttcttctatctcaatctttctcatctcaccatccattccttcaactttcttctctccatttctataaggcttagtttttggacaagcaccagccttatc |
15265517 |
T |
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| Q |
217 |
ccaatcaccttcaaaatga |
235 |
Q |
| |
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|||| |||||||||||||| |
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| T |
15265518 |
ccaagcaccttcaaaatga |
15265536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 236
Target Start/End: Original strand, 15256924 - 15257012
Alignment:
| Q |
148 |
atccattccttcaagtttcttctcctcattcttatatggctcactctttgaacatgtaccacccttatcccaatcaccttcaaaatgag |
236 |
Q |
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||||||||||||||||| ||||||| | | |||| |||| | |||||| ||| | |||| | |||||||| |||||||||||||||| |
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| T |
15256924 |
atccattccttcaagttccttctccctacttctataaggcttagtctttggacaagcaccagctttatcccattcaccttcaaaatgag |
15257012 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 15287463 - 15287495
Alignment:
| Q |
19 |
acctgcatgaccatctggtctcaataatgccaa |
51 |
Q |
| |
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||||| ||||||||||||||||||||||||||| |
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| T |
15287463 |
acctggatgaccatctggtctcaataatgccaa |
15287495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 20 - 311
Target Start/End: Original strand, 11807027 - 11807318
Alignment:
| Q |
20 |
cctgcatgaccatctggtctcaataatgccaactttgttatatcaagcacctccaaatttaatccaatttgttgagcttttactttagcattttcagctt |
119 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||| ||||| || |||| | |||||||||||||||| |
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| T |
11807027 |
cctgcatgaccatctggtctcaacaatgccaattttgttatatcaagcaccttcaaatttaatccaacttgtttagatttttccttagcattttcagctt |
11807126 |
T |
|
| Q |
120 |
cctctatctcaatacttcttatcttagcatccattccttcaagtttcttctcctcattcttatatggctcactctttgaacatgtaccacccttatccca |
219 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||| | |||||||||| ||||| ||||||||||| |
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| T |
11807127 |
cctctatctccatacttcttatcttagcttccattccttcaagtttcttctcctcatatttatatggatttttctttgaacaagtacctcccttatccca |
11807226 |
T |
|
| Q |
220 |
atcaccttcaaaatgagtaggtgagtatgttctcacaattacatcaattccattccctcttacaattttcttctcaattatgctattaaggg |
311 |
Q |
| |
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| ||||||||||||||||||||| ||||||||||||| ||||||||| |||||||| | || |||||| ||||||||||| ||||||||| |
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| T |
11807227 |
agaaccttcaaaatgagtaggtgaaaatgttctcacaatcacatcaatttcattccctttaaccattttcctctcaattatggtattaaggg |
11807318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 20 - 319
Target Start/End: Complemental strand, 51383636 - 51383337
Alignment:
| Q |
20 |
cctgcatgaccatctggtctcaataatgccaactttgttatatcaagcacctccaaatttaatccaatttgttgagcttttactttagcattttcagctt |
119 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| | ||||| ||||||| |||||||||| ||| |
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| T |
51383636 |
cctgcatgaccatctggtctcaacaatgccaattttgttatatcaagcacctccaaattaaatcccaattgttcagcttttgacttagcatttttcactt |
51383537 |
T |
|
| Q |
120 |
cctctatctcaatacttcttatcttagcatccattccttcaagtttcttctcctcattcttatatggctcactctttgaacatgtaccacccttatccca |
219 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| | ||||||||||||||||||||| || || ||||||||||| |
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| T |
51383536 |
cctctatctcaatacttcttatctcagcatccatttcttcaagtttcttctccccattttcatatggctcactctttgaacaagttcctcccttatccca |
51383437 |
T |
|
| Q |
220 |
atcaccttcaaaatgagtaggtgagtatgttctcacaattacatcaattccattccctcttacaattttcttctcaattatgctattaagggtagtcctt |
319 |
Q |
| |
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| ||||||||||||||| ||||| ||||||||||||| |||| | ||||||||||| | |||| |||| | |||||||| |||||||| ||||||||| |
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| T |
51383436 |
accaccttcaaaatgagatggtgaaaatgttctcacaatcacataatttccattccctttaacaactttcctttcaattatactattaagagtagtcctt |
51383337 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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