View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13181_low_4 (Length: 605)
Name: NF13181_low_4
Description: NF13181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13181_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 23 - 590
Target Start/End: Complemental strand, 52543398 - 52542831
Alignment:
| Q |
23 |
tgctcttcaatggctcttacctcctcaaactttcaacaaaaaacacccttttgtctatactcaatgccaagccattcatgcccgttctgttttcccttgt |
122 |
Q |
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| T |
52543398 |
tgctcttcaatggctcttacctcctcaaactttcaacaaaaaacacccttttgtctatactcaatgccaagccattcatgcccgttctgttttcccttgt |
52543299 |
T |
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| Q |
123 |
caggacacaccagccattagggtttgttattctgcccggttgaatattcccaaagaattgacggctgtcatggctgcaaaacatgtggcgcgccgcgaat |
222 |
Q |
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| T |
52543298 |
caggacacaccagccattagggtttgttattcggcccggttgaatattcccaaagaattgacggctgttatggctgcaaaacatgtggcgctccgcgaat |
52543199 |
T |
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| Q |
223 |
cattggttgacgacgagtgttttgggaattcttggcaaggtagagtggtggaagagtttgagatggaacttccaattccaccttacctttttgcatttgc |
322 |
Q |
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| T |
52543198 |
cattggttgacgacgagtgttttgggaattcgtccaaaggtagagtggtggaagagtttgagatggaacttccaattccaccttacctttttgcatttgc |
52543099 |
T |
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| Q |
323 |
agttggggagcttgataacagggaggtggggcccaggactagggtttatgctgaatctgtgactcaactgttggattcagctgctaaagagtttgatgga |
422 |
Q |
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| T |
52543098 |
agttggggagcttgataacagggaggtggggcccaggactagggtttatgctgaagctgtgactcaactgttggattcagctgctaaagagtttgatgga |
52542999 |
T |
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| Q |
423 |
actgaggatatgattagggaaggggaaagattgtttggaaattatgagtgggagagatttgatttgttggttttgccacctagttttccttatggtggta |
522 |
Q |
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| T |
52542998 |
actgaggatatgattagggaaggggaaagattgtttggaaattatgagtgggagagatttgatttgttggttttgccacctagttttccttatggtggta |
52542899 |
T |
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| Q |
523 |
tggagaatcctaggatggtgttcttgaccccgacggttattaaaggggatgcaactggtgcacaggtt |
590 |
Q |
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| T |
52542898 |
tggagaatcctaggatggtgttcttgaccccaacagttattaaaggggatgcaactggtgcacaggtt |
52542831 |
T |
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