View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13181_low_41 (Length: 251)
Name: NF13181_low_41
Description: NF13181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13181_low_41 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 14 - 251
Target Start/End: Complemental strand, 16965904 - 16965667
Alignment:
| Q |
14 |
ttcttgaacctttttactgtaataatctaaaatcatgacaaatatttttgttataataatgttttaatttacatttcacagtgcaagtcacctacgtcgc |
113 |
Q |
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| T |
16965904 |
ttcttgaacctttttactgtaataatctaaaatcatgacaaatatttttgttataataatgttttaatttacatttcacagtgcaagtcacctacgtcgc |
16965805 |
T |
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| Q |
114 |
atccggcttgtaacttttgatgctgctgatagcctttcagaaaaaggattttttgaaggcatgaagaaactttcgatgatggaggagctcgaaatttcat |
213 |
Q |
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| T |
16965804 |
atccgggttgtaacttttgatgctgctgatagcctttcagaaaaaggatttattgaaggcataaaaaaactttcgatgatagaggagctcgaaatttcat |
16965705 |
T |
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| Q |
214 |
atcccttcaaactgtcccggaattccattgaagttgta |
251 |
Q |
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| T |
16965704 |
atcccttcaaactgtcccggaattccattgaagttgta |
16965667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 33 - 251
Target Start/End: Complemental strand, 16955306 - 16955088
Alignment:
| Q |
33 |
taataatctaaaatcatgacaaatatttttgttataataatgttttaatttacatttcacagtgcaagtcacctacgtcgcatccggcttgtaacttttg |
132 |
Q |
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|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||| ||| || |
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| T |
16955306 |
taataatctaaaatcatgactactatttttgttataataatgttttaatttacatttctcagtgcaagtcacctgcgttgcatccggcttgtagcttgtg |
16955207 |
T |
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| Q |
133 |
atgctgctgatagcctttcagaaaaaggattttttgaaggcatgaagaaactttcgatgatggaggagctcgaaatttcatatcccttcaaactgtcccg |
232 |
Q |
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| T |
16955206 |
atgctgctgataacctttcagaaaaaggatttattggaggcatgaagaaactttcgatgatagaggagcttgaagttttatatcccatcaaactgtccca |
16955107 |
T |
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| Q |
233 |
gaattccattgaagttgta |
251 |
Q |
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| T |
16955106 |
gaattctattgaagctgta |
16955088 |
T |
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