View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13181_low_42 (Length: 250)
Name: NF13181_low_42
Description: NF13181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13181_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 7942399 - 7942620
Alignment:
| Q |
16 |
atatcaaatgattcacaagaattgggtcttggcccgtcaaaaacaacaataaaagaaacaaaatattttatgctagnnnnnnn-aaccacttgtagtttt |
114 |
Q |
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| T |
7942399 |
atatcaaatgattcataagaattgggtcttggcccgtctaaaacaacaataaaagaaacaaaatattttatgctatttttttttaaccacttgtagtttt |
7942498 |
T |
|
| Q |
115 |
tctgtatccac----cacattgaattaccagtagagatatttcacaattttaggaatacttatgctttagaggtagtttactttgcacgcaatgtgaact |
210 |
Q |
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| T |
7942499 |
tctgtatccacccaccacattgaattacaagtagagatatttcacaattttaggaatacttaagctttagaggtagtttactttgcacgcaatgtgaact |
7942598 |
T |
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| Q |
211 |
tgatatcatgcttctcgattga |
232 |
Q |
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|||||||||||||||||||||| |
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| T |
7942599 |
tgatatcatgcttctcgattga |
7942620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 135
Target Start/End: Original strand, 7948202 - 7948315
Alignment:
| Q |
21 |
aaatgattcacaagaattgggtcttggccc-gtcaaaaacaacaataaaagaaacaaaatattttatgctagnnnnnnnaaccacttgtagtttttctgt |
119 |
Q |
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|||||||||||||||||||||||||||||| || | ||||||||||||||||| ||||||||||| ||| |||||||||||||| ||| | |
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| T |
7948202 |
aaatgattcacaagaattgggtcttggccctatctagaacaacaataaaagaaataaaatattttacgct--ttttttttaccacttgtagtttctcttt |
7948299 |
T |
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| Q |
120 |
atccaccacattgaat |
135 |
Q |
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|||||||||||||||| |
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| T |
7948300 |
atccaccacattgaat |
7948315 |
T |
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