View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13181_low_44 (Length: 242)
Name: NF13181_low_44
Description: NF13181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13181_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 14 - 225
Target Start/End: Complemental strand, 12104571 - 12104360
Alignment:
| Q |
14 |
catcaacgaattccaattccacatctggaacgtaacaccat-agatgcttccatctctttgaaagaattgaagtgagaaaggcttgtttggtgggaagaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12104571 |
catcaacgaattccaattccacatctggaacgtaactccattagatgcttccatctctttgaaagaattgaagtgagaaaggcttgtttggtgggaagaa |
12104472 |
T |
|
| Q |
113 |
aagagagaatgtgaatcaggatatcatctgataaattgctgatcatatctaccgccaccgttgccgttgaagtttccagcgaagacattctgttaagatg |
212 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||| ||||||||||||||| |
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| T |
12104471 |
aagagagaatgtgaatcaggatatcgtctgataaattgctgatcatatctaccgccaccgttgccattgaagtttcc-gggaaggcattctgttaagatg |
12104373 |
T |
|
| Q |
213 |
gtgcggtattctt |
225 |
Q |
| |
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||||||||||||| |
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|
| T |
12104372 |
gtgcggtattctt |
12104360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 207
Target Start/End: Complemental strand, 12094231 - 12094037
Alignment:
| Q |
13 |
tcatcaacgaattccaattccacatctggaacgtaacaccatagatgcttccatctctttgaaagaattgaagtgagaaaggcttgtttggtgggaagaa |
112 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
12094231 |
tcatcgacgaattccaattccacatctggaacgtaacaccatagatgcttccatctctttgaaagaattgaagtgacaaaggcttgtttggtgggaaaag |
12094132 |
T |
|
| Q |
113 |
aagagagaatgtgaatcaggatatcatctgataaattgctgatcatatctaccgccaccgttgccgttgaagtttccagcgaagacattctgtta |
207 |
Q |
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| T |
12094131 |
aagacagaatgtgaatcaggatatcgtctggtaaattgctgatcctatctaccgccaccggtgccgttgaagtttccagcaaagacattctgtta |
12094037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 50 - 164
Target Start/End: Original strand, 1446672 - 1446786
Alignment:
| Q |
50 |
accatagatgcttccatctctttgaaagaattgaagtgagaaaggcttgtttggtgggaagaaaagagagaatgtgaatcaggatatcatctgataaatt |
149 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||| |||||||| |||| |||| | |
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| T |
1446672 |
accatagatgcttccatctctttgaaagaatggaagtgagaaaggcttgtttggtgggaagagaagagagaatttgaattaggatatcgtctggtaaact |
1446771 |
T |
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| Q |
150 |
gctgatcatatctac |
164 |
Q |
| |
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||| ||| ||||||| |
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| T |
1446772 |
gcttatcctatctac |
1446786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 38 - 165
Target Start/End: Original strand, 1460009 - 1460136
Alignment:
| Q |
38 |
ctggaacgtaacaccatagatgcttccatctctttgaaagaattgaagtgagaaaggcttgtttggtgggaagaaaagagagaatgtgaatcaggatatc |
137 |
Q |
| |
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|||||||| ||||||||||| |||||||||||||||||||| ||||| | |||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
1460009 |
ctggaacgagacaccatagattcttccatctctttgaaagaacggaagtcacaaaggcttgtttggtgggaagaggagagagaatgtgaactaggatatc |
1460108 |
T |
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| Q |
138 |
atctgataaattgctgatcatatctacc |
165 |
Q |
| |
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||||| |||| |||||||| |||||||| |
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|
| T |
1460109 |
atctggtaaaatgctgatcctatctacc |
1460136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 47 - 169
Target Start/End: Complemental strand, 409235 - 409113
Alignment:
| Q |
47 |
aacaccatagatgcttccatctctttgaaagaattgaagtgagaaaggcttgtttggtgggaagaaaagagagaatgtgaatcaggatatcatctgataa |
146 |
Q |
| |
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||||||||||||| ||||||||||||||||||| || |||| |||||||||||||||||||| ||||||||||||||||||||| || || |||| ||| |
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| T |
409235 |
aacaccatagatgagtccatctctttgaaagaatggatgtgacaaaggcttgtttggtgggaacaaaagagagaatgtgaatcagaatctcgtctggtaa |
409136 |
T |
|
| Q |
147 |
attgctgatcatatctaccgcca |
169 |
Q |
| |
|
| | | ||| |||||||||||| |
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|
| T |
409135 |
acttccaatcctatctaccgcca |
409113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 40 - 166
Target Start/End: Complemental strand, 820537 - 820411
Alignment:
| Q |
40 |
ggaacgtaacaccatagatgcttccatctctttgaaagaattgaagtgagaaaggcttgtttggtgggaagaaaagagagaatgtgaatcaggatatcat |
139 |
Q |
| |
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||||||||| ||||||||| |||||| |||||||||||| ||||||| ||||||||||||||| |||| | |||||||||| |||||||||||||||| |
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| T |
820537 |
ggaacgtaaagccatagatgaatccatcgctttgaaagaatggaagtgacaaaggcttgtttggtaggaacagaagagagaatatgaatcaggatatcat |
820438 |
T |
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| Q |
140 |
ctgataaattgctgatcatatctaccg |
166 |
Q |
| |
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| |||| || ||||| ||||||||| |
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| T |
820437 |
ccagtaaactgttgatcctatctaccg |
820411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 47 - 134
Target Start/End: Original strand, 975607 - 975694
Alignment:
| Q |
47 |
aacaccatagatgcttccatctctttgaaagaattgaagtgagaaaggcttgtttggtgggaagaaaagagagaatgtgaatcaggat |
134 |
Q |
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|
||||||| ||||| |||||| |||||||||||| ||||||| | ||||||||| |||||||| ||||||||||| |||||||||| |
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| T |
975607 |
aacaccaaagatgagtccatcgctttgaaagaatggaagtgacacaggcttgttcaatgggaagagaagagagaatgcgaatcaggat |
975694 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 134
Target Start/End: Original strand, 997471 - 997543
Alignment:
| Q |
62 |
tccatctctttgaaagaattgaagtgagaaaggcttgtttggtgggaagaaaagagagaatgtgaatcaggat |
134 |
Q |
| |
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|||||| |||||||||||| ||||| ||||||||||||||||||| ||||||||||||||| || ||||| |
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| T |
997471 |
tccatcgctttgaaagaatggaagttgcgaaggcttgtttggtgggaacaaaagagagaatgtggattaggat |
997543 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 175
Target Start/End: Original strand, 966230 - 966361
Alignment:
| Q |
44 |
cgtaacaccatagatgcttccatctctttgaaagaattgaagtgagaaaggcttgtttggtgggaagaaaagagagaatgtgaatcaggatatcatctga |
143 |
Q |
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|||||||||| ||||| |||||| |||||||||||| || ||| | |||| ||||||||||| ||||||||||| |||||||| ||||||| | |
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| T |
966230 |
cgtaacaccaaagatgaatccatcgctttgaaagaatggatgtggctaccgcttttttggtgggaacaaaagagagaacgtgaatcaatgtatcatccgg |
966329 |
T |
|
| Q |
144 |
taaattgctgatcatatctaccgccaccgttg |
175 |
Q |
| |
|
|||| | | |||| ||||||| ||| |||||| |
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|
| T |
966330 |
taaacttccgatcctatctacagccgccgttg |
966361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 958494 - 958526
Alignment:
| Q |
99 |
tttggtgggaagaaaagagagaatgtgaatcag |
131 |
Q |
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||||||||||| ||||||||||||||||||||| |
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|
| T |
958494 |
tttggtgggaacaaaagagagaatgtgaatcag |
958526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 207
Target Start/End: Original strand, 45811285 - 45811446
Alignment:
| Q |
40 |
ggaacgtaacaccatagatgcttccatctctttgaaagaattgaagtgagaaaggcttgtttggtgggaagaaaagagagaatgtgaatcaggatatcat |
139 |
Q |
| |
|
|||||||||| ||| ||||| |||||| |||||| ||||| || ||| ||||||||||||||||||| || ||||||||||||||||| || || | |
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|
| T |
45811285 |
ggaacgtaacgccaaagatgaatccatcgctttgagagaatggatgtggtgaaggcttgtttggtgggaacgaatgagagaatgtgaatcagaatctcgt |
45811384 |
T |
|
| Q |
140 |
ctgataaattgctgatcatatctaccgccaccgttgccgttgaagtttccagcgaagacattctgtta |
207 |
Q |
| |
|
||| |||| | | ||| ||||| ||||| ||||||||| ||||| ||||||||||||||||| |
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|
| T |
45811385 |
ctggtaaagttccgattctatct------accgtcgccgttgaattttccggcgaagacattctgtta |
45811446 |
T |
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