View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13181_low_5 (Length: 593)

Name: NF13181_low_5
Description: NF13181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13181_low_5
NF13181_low_5
[»] chr8 (27 HSPs)
chr8 (294-583)||(40991804-40992091)
chr8 (16-297)||(40991433-40991711)
chr8 (301-391)||(11442911-11443002)
chr8 (304-410)||(30737609-30737715)
chr8 (314-375)||(11970313-11970373)
chr8 (157-218)||(36779439-36779500)
chr8 (309-342)||(40518137-40518170)
chr8 (294-342)||(3038349-3038397)
chr8 (306-342)||(40518645-40518681)
chr8 (299-338)||(70337-70376)
chr8 (299-342)||(9483246-9483289)
chr8 (299-342)||(30441141-30441184)
chr8 (157-228)||(38516336-38516407)
chr8 (155-197)||(2698239-2698281)
chr8 (299-341)||(9309035-9309077)
chr8 (299-356)||(5981779-5981835)
chr8 (323-364)||(7480235-7480276)
chr8 (299-340)||(20870634-20870675)
chr8 (299-356)||(35224721-35224778)
chr8 (157-204)||(2778340-2778388)
chr8 (306-342)||(5915930-5915966)
chr8 (294-342)||(8918823-8918871)
chr8 (294-338)||(9620739-9620783)
chr8 (299-347)||(25561870-25561918)
chr8 (306-342)||(30359334-30359370)
chr8 (306-342)||(32640591-32640627)
chr8 (545-581)||(40992088-40992124)
[»] chr4 (42 HSPs)
chr4 (304-410)||(29802602-29802708)
chr4 (299-410)||(31957556-31957667)
chr4 (298-379)||(2041136-2041217)
chr4 (310-394)||(30788285-30788369)
chr4 (294-412)||(41603178-41603296)
chr4 (299-397)||(53667333-53667431)
chr4 (304-410)||(31894644-31894750)
chr4 (299-341)||(45484775-45484817)
chr4 (157-221)||(48575477-48575541)
chr4 (299-342)||(3340863-3340906)
chr4 (299-342)||(49880216-49880259)
chr4 (299-342)||(50630812-50630855)
chr4 (176-218)||(39438886-39438928)
chr4 (299-356)||(52884943-52885001)
chr4 (300-342)||(54936253-54936295)
chr4 (301-342)||(49302964-49303005)
chr4 (135-218)||(22699767-22699851)
chr4 (135-218)||(36150629-36150713)
chr4 (293-340)||(760239-760286)
chr4 (294-345)||(2891876-2891927)
chr4 (299-342)||(4955374-4955417)
chr4 (300-339)||(7147702-7147741)
chr4 (299-342)||(25483392-25483435)
chr4 (299-342)||(31691208-31691251)
chr4 (299-342)||(36629293-36629336)
chr4 (299-342)||(41370413-41370456)
chr4 (299-338)||(54017656-54017695)
chr4 (299-342)||(55933181-55933224)
chr4 (305-379)||(10452335-10452409)
chr4 (157-194)||(8283591-8283628)
chr4 (299-356)||(22028004-22028061)
chr4 (299-340)||(22183323-22183364)
chr4 (176-217)||(25319145-25319186)
chr4 (294-347)||(34544157-34544210)
chr4 (169-218)||(34719164-34719213)
chr4 (299-344)||(36572075-36572120)
chr4 (306-342)||(1731704-1731740)
chr4 (306-338)||(18932810-18932842)
chr4 (174-218)||(22683960-22684004)
chr4 (135-218)||(22980679-22980763)
chr4 (134-198)||(24277765-24277829)
chr4 (135-218)||(46958048-46958132)
[»] chr2 (32 HSPs)
chr2 (294-397)||(2336675-2336778)
chr2 (294-397)||(2323667-2323769)
chr2 (314-380)||(39693925-39693989)
chr2 (299-342)||(962654-962697)
chr2 (299-342)||(14745726-14745769)
chr2 (299-342)||(15880319-15880362)
chr2 (299-342)||(36178664-36178707)
chr2 (299-342)||(38796679-38796722)
chr2 (155-217)||(1763270-1763332)
chr2 (299-341)||(31385793-31385835)
chr2 (156-201)||(13482128-13482173)
chr2 (294-342)||(33561510-33561558)
chr2 (307-342)||(14745353-14745388)
chr2 (136-218)||(23359906-23359989)
chr2 (299-342)||(28254296-28254339)
chr2 (299-342)||(35580783-35580825)
chr2 (299-342)||(36005939-36005982)
chr2 (299-342)||(37106244-37106287)
chr2 (160-206)||(6767783-6767829)
chr2 (294-340)||(29874084-29874130)
chr2 (157-218)||(11759787-11759848)
chr2 (157-218)||(12110923-12110984)
chr2 (299-356)||(13091816-13091873)
chr2 (299-356)||(13365894-13365951)
chr2 (157-206)||(13475952-13476001)
chr2 (301-362)||(13766844-13766905)
chr2 (301-342)||(30323522-30323563)
chr2 (301-342)||(35580499-35580540)
chr2 (298-358)||(37842572-37842633)
chr2 (306-342)||(6421794-6421830)
chr2 (156-216)||(7659603-7659663)
chr2 (306-342)||(31468809-31468845)
[»] chr3 (30 HSPs)
chr3 (305-379)||(50329354-50329428)
chr3 (311-377)||(41857492-41857558)
chr3 (303-364)||(21867984-21868045)
chr3 (298-379)||(45717831-45717912)
chr3 (299-342)||(32589759-32589802)
chr3 (299-342)||(41359824-41359867)
chr3 (299-342)||(47964577-47964620)
chr3 (299-345)||(25991459-25991505)
chr3 (157-218)||(42644302-42644364)
chr3 (301-342)||(22303718-22303759)
chr3 (161-218)||(34457219-34457275)
chr3 (299-356)||(35946578-35946635)
chr3 (135-218)||(10852690-10852774)
chr3 (299-342)||(1634373-1634416)
chr3 (299-342)||(12114621-12114664)
chr3 (299-342)||(22304625-22304668)
chr3 (299-342)||(29644961-29645004)
chr3 (299-342)||(54018257-54018300)
chr3 (309-379)||(50329645-50329715)
chr3 (156-218)||(52925550-52925612)
chr3 (159-217)||(830047-830107)
chr3 (299-340)||(22304016-22304057)
chr3 (157-218)||(25181250-25181311)
chr3 (157-218)||(41115290-41115351)
chr3 (157-218)||(44225605-44225666)
chr3 (135-167)||(27825270-27825302)
chr3 (306-342)||(39389133-39389169)
chr3 (156-204)||(39657997-39658045)
chr3 (319-359)||(41801720-41801760)
chr3 (310-342)||(52634742-52634774)
[»] chr1 (27 HSPs)
chr1 (304-395)||(30208187-30208279)
chr1 (134-227)||(46547981-46548072)
chr1 (299-380)||(47057727-47057808)
chr1 (299-379)||(2229282-2229362)
chr1 (303-390)||(30207865-30207952)
chr1 (299-355)||(44290870-44290927)
chr1 (294-342)||(17294628-17294676)
chr1 (299-342)||(26661581-26661624)
chr1 (299-342)||(44290517-44290560)
chr1 (299-364)||(8240400-8240466)
chr1 (157-218)||(4347038-4347099)
chr1 (135-203)||(34571088-34571157)
chr1 (184-228)||(6953498-6953542)
chr1 (157-217)||(18325317-18325377)
chr1 (299-342)||(5320024-5320067)
chr1 (176-223)||(7335899-7335946)
chr1 (299-342)||(26661957-26662000)
chr1 (299-342)||(31767220-31767263)
chr1 (299-342)||(34364981-34365024)
chr1 (294-337)||(41184489-41184532)
chr1 (155-218)||(47981794-47981857)
chr1 (315-397)||(37170066-37170148)
chr1 (157-218)||(13344837-13344898)
chr1 (299-359)||(26231697-26231757)
chr1 (306-342)||(32168757-32168793)
chr1 (299-347)||(41142428-41142476)
chr1 (299-339)||(41157431-41157471)
[»] chr5 (26 HSPs)
chr5 (301-356)||(32445943-32445998)
chr5 (299-347)||(26075216-26075264)
chr5 (332-388)||(37312945-37313001)
chr5 (299-342)||(18603179-18603222)
chr5 (299-342)||(25327991-25328034)
chr5 (299-342)||(26074668-26074711)
chr5 (299-342)||(32487449-32487492)
chr5 (299-342)||(41170690-41170733)
chr5 (157-228)||(43438592-43438663)
chr5 (156-228)||(6988206-6988278)
chr5 (299-342)||(9498713-9498756)
chr5 (154-221)||(10273265-10273332)
chr5 (299-342)||(40296374-40296417)
chr5 (299-342)||(41632838-41632881)
chr5 (157-223)||(2868350-2868416)
chr5 (174-224)||(19784861-19784911)
chr5 (304-342)||(36521955-36521993)
chr5 (299-340)||(3295405-3295446)
chr5 (297-342)||(26074205-26074250)
chr5 (133-218)||(38592308-38592392)
chr5 (299-339)||(11417039-11417079)
chr5 (299-339)||(15370458-15370498)
chr5 (184-228)||(19563774-19563818)
chr5 (299-351)||(31866026-31866078)
chr5 (160-228)||(40910921-40910989)
chr5 (154-218)||(42439246-42439310)
[»] chr7 (26 HSPs)
chr7 (321-375)||(23714886-23714940)
chr7 (311-377)||(32567963-32568029)
chr7 (134-227)||(1024632-1024723)
chr7 (294-342)||(1085675-1085723)
chr7 (134-214)||(40795894-40795974)
chr7 (299-342)||(7517636-7517679)
chr7 (299-342)||(22566721-22566764)
chr7 (299-376)||(22768538-22768615)
chr7 (299-356)||(37533056-37533112)
chr7 (299-355)||(36939779-36939835)
chr7 (299-342)||(23436-23479)
chr7 (299-342)||(6054616-6054659)
chr7 (299-338)||(16569252-16569291)
chr7 (299-338)||(16596371-16596410)
chr7 (299-342)||(30244326-30244369)
chr7 (299-342)||(34218093-34218136)
chr7 (299-342)||(37533423-37533466)
chr7 (183-217)||(5489823-5489857)
chr7 (314-364)||(7192786-7192836)
chr7 (294-356)||(45679478-45679540)
chr7 (297-342)||(1085307-1085352)
chr7 (299-340)||(11845247-11845288)
chr7 (294-359)||(45335508-45335573)
chr7 (157-229)||(7168990-7169062)
chr7 (135-167)||(30416255-30416287)
chr7 (135-218)||(38494277-38494361)
[»] scaffold0248 (1 HSPs)
scaffold0248 (147-204)||(13265-13322)
[»] chr6 (30 HSPs)
chr6 (299-356)||(10074036-10074093)
chr6 (299-342)||(2377810-2377853)
chr6 (299-356)||(2579917-2579974)
chr6 (294-342)||(2578502-2578550)
chr6 (323-379)||(18089922-18089978)
chr6 (157-217)||(34073460-34073520)
chr6 (299-342)||(3409315-3409358)
chr6 (299-338)||(3415514-3415553)
chr6 (299-342)||(10074422-10074465)
chr6 (299-342)||(16107734-16107777)
chr6 (299-342)||(29518559-29518602)
chr6 (299-342)||(29518976-29519019)
chr6 (299-342)||(32460639-32460682)
chr6 (299-342)||(32741235-32741278)
chr6 (299-342)||(35210260-35210303)
chr6 (157-219)||(10054992-10055054)
chr6 (157-231)||(10874208-10874282)
chr6 (310-379)||(405043-405112)
chr6 (299-356)||(2378182-2378239)
chr6 (322-363)||(3624849-3624890)
chr6 (294-379)||(5034843-5034928)
chr6 (294-339)||(12092544-12092589)
chr6 (299-340)||(16454631-16454672)
chr6 (174-206)||(2234162-2234194)
chr6 (294-346)||(6498649-6498701)
chr6 (149-221)||(20846420-20846491)
chr6 (311-355)||(22605301-22605345)
chr6 (169-213)||(25208326-25208370)
chr6 (299-339)||(26544105-26544145)
chr6 (134-178)||(31305752-31305796)
[»] scaffold0702 (1 HSPs)
scaffold0702 (299-342)||(573-616)
[»] scaffold0391 (1 HSPs)
scaffold0391 (299-338)||(1754-1793)
[»] scaffold0172 (1 HSPs)
scaffold0172 (157-218)||(15257-15318)
[»] scaffold0078 (1 HSPs)
scaffold0078 (299-340)||(5413-5454)
[»] scaffold0027 (1 HSPs)
scaffold0027 (299-356)||(47416-47473)
[»] scaffold0015 (1 HSPs)
scaffold0015 (157-218)||(65540-65601)


Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 294 - 583
Target Start/End: Original strand, 40991804 - 40992091
Alignment:
Q  294 acttcataagtgagaggacccataaacccaatgccttaaggttttgggttaagatgtggtgtccaactcacctgcgtggttgctctgggcccaatgtgga 393  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  40991804 acttcataagtgagaggacccataaacccaatgcctcaaggttttgggttaagatgtggtgtccaactcacctgtgtggttgctctaggcccaatgtgga 40991903  T
Q  394 tgatgccctgggctccctcatgtacaacacaagttataaaaatgttcctccattttaaagatattattttgctaactaattgtttattagtatattagta 493  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  40991904 tgatcccctaggctccctcatgtacaacacaagttataaaaatgttcctccattttaaagatattattttgctaactaa--gtttattagtatattagta 40992001  T
Q  494 ttaatatatactgtatgtctgagctgaacttgttttctattctgctgaatatttgattaagaacaatttagtgtttttcatagtcctttg 583  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40992002 ttaatatatactgtatgtctgagctgaacttgttttctattctgctgaatatttgattaagaacaatttagtgtttttcatagtcctttg 40992091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 16 - 297
Target Start/End: Original strand, 40991433 - 40991711
Alignment:
Q  16 aaatgatgcagattgaatgaggaaatgaagagcattgatagtctagcatcccaattgtatccaatcactttactctttgaaaattgctaagttagtgcat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40991433 aaatgatgcagattgaatgaggaaatgaagagcattgatagtctagcatcccaattgtatccaatcactttactctttgaaaattgctaagttagtgcat 40991532  T
Q  116 gtttggtttgactagttcatgtttggttatgcggtaacaaaaattgattttgtaaaaatgattttacttaaaaatgagttgaatgtaaagttgtttatgt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40991533 gtttggtttgactagttcatgtttggttatgcggtaacaaaaattgattttgtaaaaatgattttacttaaaaatgagttgaatgtaaagttgtttatgt 40991632  T
Q  216 ttgaatgtatttaggtnnnnnnnnntgagttgaataaagtcgtttatgggatgttgagtgtttgaatacatttatgcaactt 297  Q
    ||||||||||||||||         |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  40991633 ttgaatgtatttaggt--aaaaaaatgagttgaataaagtcgtttat-ggatgttgaatgtttgaatacatttatgcaactt 40991711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 301 - 391
Target Start/End: Original strand, 11442911 - 11443002
Alignment:
Q  301 aagtgagaggacccataaacccaatgccttaaggttttgggttaagatgtggtgtccaa-ctcacctgcgtggttgctctgggcccaatgtg 391  Q
    |||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||| ||||| || |||||||||||  ||||||||||    
T  11442911 aagtgagaggacccataaactcaatgccttaaggttttgggtgaatatgtggtgtccaatctcacttgtgtggttgctcttagcccaatgtg 11443002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 304 - 410
Target Start/End: Complemental strand, 30737715 - 30737609
Alignment:
Q  304 tgagaggacccataaacccaatgccttaaggttttgggttaagatgtggtgtccaactcacctgcgtggttgctctgggcccaatgtggatgatgccctg 403  Q
    ||||||||||||||||||||||| | ||||||||||||||||  || |||||||||||||  ||  ||||||||||   |||||||| |||||| ||| |    
T  30737715 tgagaggacccataaacccaatgtcataaggttttgggttaaagtgcggtgtccaactcaattgtatggttgctctaatcccaatgtagatgatccccag 30737616  T
Q  404 ggctccc 410  Q
     ||||||    
T  30737615 agctccc 30737609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 314 - 375
Target Start/End: Original strand, 11970313 - 11970373
Alignment:
Q  314 cataaacccaatgccttaaggttttgggttaagatgtggtgtccaactcacctgcgtggttg 375  Q
    ||||||| ||||||||| || |||||||||||||||||||| |||||| || ||||||||||    
T  11970313 cataaactcaatgcctttagattttgggttaagatgtggtgcccaact-acttgcgtggttg 11970373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 36779500 - 36779439
Alignment:
Q  157 aattgattttgtaaaaatgattttacttaaaaatgagttgaatgtaaagttgtttatgtttg 218  Q
    ||||||||||||| || |||||||  |||||| |||||||||||||||||  ||||||||||    
T  36779500 aattgattttgtagaattgattttgattaaaagtgagttgaatgtaaagtaatttatgtttg 36779439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 309 - 342
Target Start/End: Original strand, 40518137 - 40518170
Alignment:
Q  309 ggacccataaacccaatgccttaaggttttgggt 342  Q
    ||||||||||||||||||||||||||||||||||    
T  40518137 ggacccataaacccaatgccttaaggttttgggt 40518170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 342
Target Start/End: Complemental strand, 3038397 - 3038349
Alignment:
Q  294 acttcataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||| |||||| | |||||||||||||||| ||||||||||||||||||    
T  3038397 actttataagtaaaaggacccataaacccattgccttaaggttttgggt 3038349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 342
Target Start/End: Original strand, 40518645 - 40518681
Alignment:
Q  306 agaggacccataaacccaatgccttaaggttttgggt 342  Q
    ||||||||||||||||||||| |||||||||||||||    
T  40518645 agaggacccataaacccaatgacttaaggttttgggt 40518681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 70376 - 70337
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggtttt 338  Q
    |||||| |||||||||||||||||| ||||||||||||||    
T  70376 ataagtaagaggacccataaacccactgccttaaggtttt 70337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 9483289 - 9483246
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| |||||||||||||||||| || |||||||||||||||    
T  9483289 ataagtaagaggacccataaacccattgtcttaaggttttgggt 9483246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 30441141 - 30441184
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| ||||| |||||||||||| ||||||||||||||||||    
T  30441141 ataagtaagagggcccataaacccattgccttaaggttttgggt 30441184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 38516407 - 38516336
Alignment:
Q  157 aattgattttgtaaaaatgattttacttaaaaatgagttgaatgtaaagttgtttatgtttgaatgtattta 228  Q
    ||||||||||||| || |||||||   ||| | |||||||||||||||||  |||||||||| |||||||||    
T  38516407 aattgattttgtagaattgattttcgataatagtgagttgaatgtaaagtgatttatgtttggatgtattta 38516336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 155 - 197
Target Start/End: Complemental strand, 2698281 - 2698239
Alignment:
Q  155 aaaattgattttgtaaaaatgattttacttaaaaatgagttga 197  Q
    ||||||||||||||||||  |||||||||||||| ||||||||    
T  2698281 aaaattgattttgtaaaaccgattttacttaaaagtgagttga 2698239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 299 - 341
Target Start/End: Original strand, 9309035 - 9309077
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttggg 341  Q
    |||||| |||||||||||||||||| ||||| |||||||||||    
T  9309035 ataagtaagaggacccataaacccattgcctaaaggttttggg 9309077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 356
Target Start/End: Complemental strand, 5981835 - 5981779
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggttaagatgtggtgtc 356  Q
    ||||| ||| ||||||||||||| | ||||||||||||||||||  ||||||||||||    
T  5981835 ataagagaggggacccataaacc-attgccttaaggttttgggtggagatgtggtgtc 5981779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 364
Target Start/End: Complemental strand, 7480276 - 7480235
Alignment:
Q  323 aatgccttaaggttttgggttaagatgtggtgtccaactcac 364  Q
    |||||||||||||||| |||  ||||||||||||||||||||    
T  7480276 aatgccttaaggttttaggtacagatgtggtgtccaactcac 7480235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 340
Target Start/End: Complemental strand, 20870675 - 20870634
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgg 340  Q
    |||||| |||||||||||||||||| ||||||||| ||||||    
T  20870675 ataagtaagaggacccataaacccactgccttaagattttgg 20870634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 356
Target Start/End: Complemental strand, 35224778 - 35224721
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggttaagatgtggtgtc 356  Q
    |||| ||||| ||| |||||||  ||||||||||| |||||||| |||||||||||||    
T  35224778 ataactgagatgacgcataaacataatgccttaagattttgggtgaagatgtggtgtc 35224721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 2778340 - 2778388
Alignment:
Q  157 aattgattttgtaaaaat-gattttacttaaaaatgagttgaatgtaaa 204  Q
    ||||||||||| | |||| |||||||||||||| |||||||||||||||    
T  2778340 aattgattttgaataaattgattttacttaaaagtgagttgaatgtaaa 2778388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 306 - 342
Target Start/End: Original strand, 5915930 - 5915966
Alignment:
Q  306 agaggacccataaacccaatgccttaaggttttgggt 342  Q
    ||||||||||||||| || ||||||||||||||||||    
T  5915930 agaggacccataaactcattgccttaaggttttgggt 5915966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 294 - 342
Target Start/End: Complemental strand, 8918871 - 8918823
Alignment:
Q  294 acttcataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||| |||||| |||||||||||||||| | || |||||||||||||||    
T  8918871 actttataagtaagaggacccataaacctattgacttaaggttttgggt 8918823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 294 - 338
Target Start/End: Complemental strand, 9620783 - 9620739
Alignment:
Q  294 acttcataagtgagaggacccataaacccaatgccttaaggtttt 338  Q
    |||| |||||||||||||||||||||| || ||||||||| ||||    
T  9620783 actttataagtgagaggacccataaactcattgccttaagatttt 9620739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 299 - 347
Target Start/End: Complemental strand, 25561918 - 25561870
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggttaaga 347  Q
    |||||| ||||||||||||||| || || |||||||||||||| |||||    
T  25561918 ataagtaagaggacccataaactcattgtcttaaggttttggggtaaga 25561870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 306 - 342
Target Start/End: Original strand, 30359334 - 30359370
Alignment:
Q  306 agaggacccataaacccaatgccttaaggttttgggt 342  Q
    ||||||||||||||||||  |||||||||||||||||    
T  30359334 agaggacccataaacccatagccttaaggttttgggt 30359370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 306 - 342
Target Start/End: Complemental strand, 32640627 - 32640591
Alignment:
Q  306 agaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  32640627 agaggaccgataaacccattgccttaaggttttgggt 32640591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 545 - 581
Target Start/End: Original strand, 40992088 - 40992124
Alignment:
Q  545 tttgattaagaacaatttagtgtttttcatagtcctt 581  Q
    |||||||| |||||||||||||||||||||| |||||    
T  40992088 tttgattaggaacaatttagtgtttttcatattcctt 40992124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 304 - 410
Target Start/End: Original strand, 29802602 - 29802708
Alignment:
Q  304 tgagaggacccataaacccaatgccttaaggttttgggttaagatgtggtgtccaactcacctgcgtggttgctctgggcccaatgtggatgatgccctg 403  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| || ||||||||||| ||||||||||||||||| ||| |    
T  29802602 tgagaggacccataaacccaatgccttaaggttttgtgttaagatatggtgtccaactcacttgtgtggttgctcttggcccaatgtggatgatcccccg 29802701  T
Q  404 ggctccc 410  Q
    |||||||    
T  29802702 ggctccc 29802708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 299 - 410
Target Start/End: Original strand, 31957556 - 31957667
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggttaagatgtggtgtccaactcacctgcgtggttgctctgggcccaatgtggatgatg 398  Q
    ||||||||||| | ||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||  ||| |||||||     
T  31957556 ataagtgagagaatccataaacaaaatgccttaaggttttgggttaagatgtggtgtccaactcacttgcgtggttgctcttgccctgatgaggatgatc 31957655  T
Q  399 ccctgggctccc 410  Q
    ||||| ||||||    
T  31957656 ccctgagctccc 31957667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 298 - 379
Target Start/End: Original strand, 2041136 - 2041217
Alignment:
Q  298 cataagtgagaggacccataaacccaatgccttaaggttttgggttaagatgtggtgtccaactcacctgcgtggttgctct 379  Q
    ||||||||||| ||||| |||| ||| |||||||||||||||||| ||||||||||||||||||||| || |||||||||||    
T  2041136 cataagtgagatgacccgtaaatccattgccttaaggttttgggtgaagatgtggtgtccaactcacttgtgtggttgctct 2041217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 310 - 394
Target Start/End: Original strand, 30788285 - 30788369
Alignment:
Q  310 gacccataaacccaatgccttaaggttttgggttaagatgtggtgtccaactcacctgcgtggttgctctgggcccaatgtggat 394  Q
    |||||||||| |||||| |||||||||||||||||||||||||||| |||||||  || ||||||||||| | ||||||||||||    
T  30788285 gacccataaatccaatgtcttaaggttttgggttaagatgtggtgttcaactcaattgagtggttgctcttgacccaatgtggat 30788369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 294 - 412
Target Start/End: Complemental strand, 41603296 - 41603178
Alignment:
Q  294 acttcataagtgagaggacccataaacccaatgccttaaggttttgggttaagatgtggtgtccaactcacctgcgtggttgctctgggcccaatgtgga 393  Q
    |||| |||||||||| |||||||||||  | || ||||||||||||||| ||||| |||||| ||| |||| ||  |||||||| |||||||||||||||    
T  41603296 actttataagtgagaagacccataaacatagtgtcttaaggttttgggtaaagatttggtgtacaattcacttgtatggttgctttgggcccaatgtgga 41603197  T
Q  394 tgatgccctgggctccctc 412  Q
    |||| | || |||||||||    
T  41603196 tgattctctaggctccctc 41603178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 299 - 397
Target Start/End: Complemental strand, 53667431 - 53667333
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggttaagatgtggtgtccaactcacctgcgtggttgctctgggcccaatgtggatgat 397  Q
    |||||||| | |||||||||| ||||||| |||||||||| |||| |  ||||||||| ||||||| ||||| ||||||||| ||||||||||||||||    
T  53667431 ataagtgacaagacccataaatccaatgcattaaggttttaggttgaagtgtggtgtctaactcacttgcgttgttgctctgagcccaatgtggatgat 53667333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 304 - 410
Target Start/End: Original strand, 31894644 - 31894750
Alignment:
Q  304 tgagaggacccataaacccaatgccttaaggttttgggttaagatgtggtgtccaactcacctgcgtggttgctctgggcccaatgtggatgatgccctg 403  Q
    |||||| |||| |||||  ||||||||||| |||| ||||||||||| |||||||| |||| || ||||||||||| | || |||| ||||||| |||||    
T  31894644 tgagagaacccgtaaacaaaatgccttaagtttttaggttaagatgttgtgtccaattcacttgtgtggttgctcttgtcctaatgaggatgatcccctg 31894743  T
Q  404 ggctccc 410  Q
     ||||||    
T  31894744 agctccc 31894750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 299 - 341
Target Start/End: Original strand, 45484775 - 45484817
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttggg 341  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  45484775 ataagtgagagaacccataaacccaatgccttaaggttttggg 45484817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 48575541 - 48575477
Alignment:
Q  157 aattgattttgtaaaaatgattttacttaaaaatgagttgaatgtaaagttgtttatgtttgaat 221  Q
    |||||||||||||||| |||||||   ||||||||||||||||||||| | |||||| |||||||    
T  48575541 aattgattttgtaaaattgatttttgataaaaatgagttgaatgtaaaatggtttatttttgaat 48575477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 3340863 - 3340906
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| |||||||||||||||||| ||||||||||||||||||    
T  3340863 ataagtaagaggacccataaacccactgccttaaggttttgggt 3340906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 49880216 - 49880259
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| |||||||||||||||||| ||||||||||||||||||    
T  49880216 ataagtaagaggacccataaacccactgccttaaggttttgggt 49880259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 50630855 - 50630812
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| |||||||||||||||||| ||||||||||||||||||    
T  50630855 ataagtaagaggacccataaacccattgccttaaggttttgggt 50630812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 218
Target Start/End: Complemental strand, 39438928 - 39438886
Alignment:
Q  176 attttacttaaaaatgagttgaatgtaaagttgtttatgtttg 218  Q
    ||||||||||||| |||||||||||| ||||||||||||||||    
T  39438928 attttacttaaaagtgagttgaatgtgaagttgtttatgtttg 39438886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 356
Target Start/End: Original strand, 52884943 - 52885001
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggttaag-atgtggtgtc 356  Q
    |||||| |||||| ||||||||||| ||||||||||||||||| |||| ||||||||||    
T  52884943 ataagtaagaggatccataaacccattgccttaaggttttggggtaagaatgtggtgtc 52885001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 342
Target Start/End: Original strand, 54936253 - 54936295
Alignment:
Q  300 taagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    ||||| |||||||||||||||||| ||||||||||||||||||    
T  54936253 taagtaagaggacccataaacccattgccttaaggttttgggt 54936295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 301 - 342
Target Start/End: Original strand, 49302964 - 49303005
Alignment:
Q  301 aagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||| |||||||||||||||||| ||||||||||||||||||    
T  49302964 aagtaagaggacccataaacccattgccttaaggttttgggt 49303005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 218
Target Start/End: Complemental strand, 22699851 - 22699767
Alignment:
Q  135 tgtttggttatgcggtaacaaaaattgattttg-taaaaatgattttacttaaaaatgagttgaatgtaaagttgtttatgtttg 218  Q
    ||||||||| |||||| | |||||||||||||| || || |||||||  |||||| | |||||||||||||||  ||||||||||    
T  22699851 tgtttggttgtgcggtgaaaaaaattgattttggtagaattgattttggttaaaagtaagttgaatgtaaagtgatttatgtttg 22699767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 218
Target Start/End: Complemental strand, 36150713 - 36150629
Alignment:
Q  135 tgtttggttatgcggtaacaaaaattgattttg-taaaaatgattttacttaaaaatgagttgaatgtaaagttgtttatgtttg 218  Q
    ||||||||| |||||| || | ||||||||||| || || |||||||  |||||| |||||||||||||||||  ||||||||||    
T  36150713 tgtttggttgtgcggtgacgagaattgattttgatataattgattttgattaaaagtgagttgaatgtaaagtgatttatgtttg 36150629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 340
Target Start/End: Original strand, 760239 - 760286
Alignment:
Q  293 aacttcataagtgagaggacccataaacccaatgccttaaggttttgg 340  Q
    ||||| |||||||||||||||||||||| || ||||||||| ||||||    
T  760239 aactttataagtgagaggacccataaactcattgccttaagattttgg 760286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 345
Target Start/End: Complemental strand, 2891927 - 2891876
Alignment:
Q  294 acttcataagtgagaggacccataaacccaatgccttaaggttttgggttaa 345  Q
    |||| |||||| |||||| ||||||||| |||| ||||||||||||||||||    
T  2891927 actttataagtaagaggatccataaacctaatgtcttaaggttttgggttaa 2891876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 4955417 - 4955374
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| ||||||| |||||||||| ||||||||||||||||||    
T  4955417 ataagtaagaggactcataaacccattgccttaaggttttgggt 4955374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 339
Target Start/End: Complemental strand, 7147741 - 7147702
Alignment:
Q  300 taagtgagaggacccataaacccaatgccttaaggttttg 339  Q
    ||||||||||||||| ||||||||||| ||||||||||||    
T  7147741 taagtgagaggacccgtaaacccaatgtcttaaggttttg 7147702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 25483392 - 25483435
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| |||||| ||||||||||| ||||||||||||||||||    
T  25483392 ataagtaagaggatccataaacccattgccttaaggttttgggt 25483435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 31691208 - 31691251
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| ||||||||||||||| || ||||||||||||||||||    
T  31691208 ataagtaagaggacccataaactcattgccttaaggttttgggt 31691251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 36629293 - 36629336
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| ||||||||||||||| || ||||||||||||||||||    
T  36629293 ataagtaagaggacccataaactcattgccttaaggttttgggt 36629336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 41370413 - 41370456
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| |||||||||||||||||| |||||||| |||||||||    
T  41370413 ataagtaagaggacccataaacccattgccttaaagttttgggt 41370456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 54017695 - 54017656
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggtttt 338  Q
    |||||| |||||||||||||||||| ||||||||||||||    
T  54017695 ataagtaagaggacccataaacccattgccttaaggtttt 54017656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 55933224 - 55933181
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| |||||||||||||||||| |||||||| |||||||||    
T  55933224 ataagtaagaggacccataaacccattgccttaaagttttgggt 55933181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 305 - 379
Target Start/End: Complemental strand, 10452409 - 10452335
Alignment:
Q  305 gagaggacccataaacccaatgccttaaggttttgggttaagatgtggtgtccaactcacctgcgtggttgctct 379  Q
    ||||||||||||||||   ||||||||| |||||  ||||| ||||||||| |||||||| ||  ||||||||||    
T  10452409 gagaggacccataaacttcatgccttaaagtttttagttaaaatgtggtgttcaactcacttgtatggttgctct 10452335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 8283591 - 8283628
Alignment:
Q  157 aattgattttgtaaaaatgattttacttaaaaatgagt 194  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  8283591 aattgattttgtaaaattgattttacttaaaagtgagt 8283628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 356
Target Start/End: Complemental strand, 22028061 - 22028004
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggttaagatgtggtgtc 356  Q
    |||||| |||||||||||||||  | |||||||||||||||||| |  ||||||||||    
T  22028061 ataagtaagaggacccataaacatattgccttaaggttttgggtaagaatgtggtgtc 22028004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 340
Target Start/End: Complemental strand, 22183364 - 22183323
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgg 340  Q
    |||||| | |||||||||||||||| ||||||||||||||||    
T  22183364 ataagtaaaaggacccataaacccattgccttaaggttttgg 22183323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 25319186 - 25319145
Alignment:
Q  176 attttacttaaaaatgagttgaatgtaaagttgtttatgttt 217  Q
    ||||||||||||| | |||||||||||||||| |||||||||    
T  25319186 attttacttaaaagtaagttgaatgtaaagttttttatgttt 25319145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 347
Target Start/End: Original strand, 34544157 - 34544210
Alignment:
Q  294 acttcataagtgagaggacccataaacccaatgccttaaggttttgggttaaga 347  Q
    |||| |||| ||||||||||||||||| || |||||||||||||| || |||||    
T  34544157 actttataaatgagaggacccataaactcattgccttaaggtttttgggtaaga 34544210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 34719213 - 34719164
Alignment:
Q  169 aaaaatgattttacttaaaaatgagttgaatgtaaagttgtttatgtttg 218  Q
    |||| |||||||||||||||  ||||| |||||||| |||||||||||||    
T  34719213 aaaattgattttacttaaaaccgagttaaatgtaaaattgtttatgtttg 34719164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 344
Target Start/End: Original strand, 36572075 - 36572120
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggtta 344  Q
    |||||| ||| |||||||||| ||| ||||||||||||||||||||    
T  36572075 ataagtaagaagacccataaatccattgccttaaggttttgggtta 36572120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 306 - 342
Target Start/End: Complemental strand, 1731740 - 1731704
Alignment:
Q  306 agaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||||||||||||| | ||||||||||||||||||    
T  1731740 agaggacccataaaccaattgccttaaggttttgggt 1731704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 18932842 - 18932810
Alignment:
Q  306 agaggacccataaacccaatgccttaaggtttt 338  Q
    |||||||||||||||||| ||||||||||||||    
T  18932842 agaggacccataaacccattgccttaaggtttt 18932810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 22684004 - 22683960
Alignment:
Q  174 tgattttacttaaaaatgagttgaatgtaaagttgtttatgtttg 218  Q
    ||||||||||||||| ||||||||| ||||| | |||||||||||    
T  22684004 tgattttacttaaaagtgagttgaaagtaaaatggtttatgtttg 22683960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 218
Target Start/End: Original strand, 22980679 - 22980763
Alignment:
Q  135 tgtttggttatgcggtaacaaaaattgattttg-taaaaatgattttacttaaaaatgagttgaatgtaaagttgtttatgtttg 218  Q
    ||||||||| || ||| | |||||||||||||| || || |||||||  |||||| | |||||||||||||||  ||||||||||    
T  22980679 tgtttggttgtgtggtgaaaaaaattgattttggtagaattgattttggttaaaagtaagttgaatgtaaagtgatttatgtttg 22980763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 24277829 - 24277765
Alignment:
Q  134 atgtttggttatgcggtaacaaaaattgattttgtaaaaatgattttacttaaaaatgagttgaa 198  Q
    ||||||||||||| ||| |  |||||| |||  ||||||||||||||| |||||||| |||||||    
T  24277829 atgtttggttatgtggttattaaaattaattcagtaaaaatgattttaattaaaaattagttgaa 24277765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 218
Target Start/End: Complemental strand, 46958132 - 46958048
Alignment:
Q  135 tgtttggttatgcggtaacaaaaattgattttg-taaaaatgattttacttaaaaatgagttgaatgtaaagttgtttatgtttg 218  Q
    ||||||||| ||||||   |||||||||||||| || || |||||||  |||||| ||||||||| |||||||  ||||||||||    
T  46958132 tgtttggttgtgcggtggaaaaaattgattttgatagaattgattttggttaaaagtgagttgaacgtaaagtaatttatgtttg 46958048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 294 - 397
Target Start/End: Original strand, 2336675 - 2336778
Alignment:
Q  294 acttcataagtgagaggacccataaacccaatgccttaaggttttgggttaagatgtggtgtccaactcacctgcgtggttgctctgggcccaatgtgga 393  Q
    |||| |||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||  |||||||| ||    
T  2336675 actttataagtgagaggacccataaattcaatgccttaagattttgggttaagatgtggtgtccaactcacttgtgtggttgctctgaacccaatgtcga 2336774  T
Q  394 tgat 397  Q
    ||||    
T  2336775 tgat 2336778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 294 - 397
Target Start/End: Original strand, 2323667 - 2323769
Alignment:
Q  294 acttcataagtgagaggacccataaacccaatgccttaaggttttgggttaagatgtggtgtccaactcacctgcgtggttgctctgggcccaatgtgga 393  Q
    |||| ||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||  ||||| || ||| | |||||| ||    
T  2323667 actttataagtgagaggatccataaacc-aatgccttaaggttttaggttaagatgtggtgtccaactcacttgtatggttactttggtctcaatgtaga 2323765  T
Q  394 tgat 397  Q
    ||||    
T  2323766 tgat 2323769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 314 - 380
Target Start/End: Original strand, 39693925 - 39693989
Alignment:
Q  314 cataaacccaatgccttaaggttttgggttaagatgtggtgtccaactcacctgcgtggttgctctg 380  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||| |  ||||||||||||    
T  39693925 cataaactcaatgccttaagattttgggttaagatgtggtgtccaactcactt--gtggttgctctg 39693989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 962654 - 962697
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    ||||||||||||||||||||||||| || |||||||||||||||    
T  962654 ataagtgagaggacccataaacccattgtcttaaggttttgggt 962697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 14745769 - 14745726
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| |||||||||||||||||| ||||||||||||||||||    
T  14745769 ataagtaagaggacccataaacccattgccttaaggttttgggt 14745726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 15880319 - 15880362
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| |||||||||||||||||| ||||||||||||||||||    
T  15880319 ataagtaagaggacccataaacccattgccttaaggttttgggt 15880362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 36178707 - 36178664
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| |||||||||||||||||| ||||||||||||||||||    
T  36178707 ataagtaagaggacccataaacccattgccttaaggttttgggt 36178664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 38796722 - 38796679
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| |||||||||||||||| ||||||||||||||||||||    
T  38796722 ataagtaagaggacccataaacctaatgccttaaggttttgggt 38796679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 155 - 217
Target Start/End: Complemental strand, 1763332 - 1763270
Alignment:
Q  155 aaaattgattttgtaaaaatgattttacttaaaaatgagttgaatgtaaagttgtttatgttt 217  Q
    |||||||||||||||||| |||||||  |||||| |||||||||| ||||||  |||||||||    
T  1763332 aaaattgattttgtaaaattgattttggttaaaattgagttgaatttaaagtgatttatgttt 1763270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 341
Target Start/End: Original strand, 31385793 - 31385835
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttggg 341  Q
    |||||||| |||||||||||||||| |||||||||||||||||    
T  31385793 ataagtgaaaggacccataaacccattgccttaaggttttggg 31385835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 13482173 - 13482128
Alignment:
Q  156 aaattgattttgtaaaaatgattttacttaaaaatgagttgaatgt 201  Q
    ||||||||||||||||||| |||||| || ||||||||||||||||    
T  13482173 aaattgattttgtaaaaataattttaattcaaaatgagttgaatgt 13482128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 342
Target Start/End: Complemental strand, 33561558 - 33561510
Alignment:
Q  294 acttcataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||| |||||||||||||||||||||| || || |||||||||||||||    
T  33561558 actttataagtgagaggacccataaactcattgtcttaaggttttgggt 33561510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 342
Target Start/End: Complemental strand, 14745388 - 14745353
Alignment:
Q  307 gaggacccataaacccaatgccttaaggttttgggt 342  Q
    ||||||||||||||||| ||||||||||||||||||    
T  14745388 gaggacccataaacccattgccttaaggttttgggt 14745353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 218
Target Start/End: Original strand, 23359906 - 23359989
Alignment:
Q  136 gtttggttatgcggtaacaaaaattgattttg-taaaaatgattttacttaaaaatgagttgaatgtaaagttgtttatgtttg 218  Q
    |||||||| ||||||   |||||||||||||| || || |||||||  |||||| |||||||||||||||||  ||||||||||    
T  23359906 gtttggttgtgcggtggaaaaaattgattttggtagaattgattttggttaaaagtgagttgaatgtaaagtgatttatgtttg 23359989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 28254339 - 28254296
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| ||||||||||||||| || ||||||||||||||||||    
T  28254339 ataagtaagaggacccataaactcattgccttaaggttttgggt 28254296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 35580825 - 35580783
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||    
T  35580825 ataagtgagaggacc-ataaacccattgccttaaggttttgggt 35580783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 36005982 - 36005939
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| ||||||||||||||| || ||||||||||||||||||    
T  36005982 ataagtaagaggacccataaactcattgccttaaggttttgggt 36005939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 37106244 - 37106287
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| |||||||||||||||||| | ||||||||||||||||    
T  37106244 ataagtaagaggacccataaacccatttccttaaggttttgggt 37106287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 160 - 206
Target Start/End: Complemental strand, 6767829 - 6767783
Alignment:
Q  160 tgattttgtaaaaatgattttacttaaaaatgagttgaatgtaaagt 206  Q
    ||||||||||||| ||||| |  ||||||||||||||||||||||||    
T  6767829 tgattttgtaaaattgattgtgattaaaaatgagttgaatgtaaagt 6767783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 294 - 340
Target Start/End: Complemental strand, 29874130 - 29874084
Alignment:
Q  294 acttcataagtgagaggacccataaacccaatgccttaaggttttgg 340  Q
    |||| |||| || ||||||||||||||||| ||||||||||||||||    
T  29874130 actttataattgggaggacccataaacccattgccttaaggttttgg 29874084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 11759787 - 11759848
Alignment:
Q  157 aattgattttgtaaaaatgattttacttaaaaatgagttgaatgtaaagttgtttatgtttg 218  Q
    |||||||||||||||| |||||||  |||||| ||||||||| ||||| | |||| ||||||    
T  11759787 aattgattttgtaaaattgattttgattaaaagtgagttgaaggtaaattggtttgtgtttg 11759848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 12110984 - 12110923
Alignment:
Q  157 aattgattttgtaaaaatgattttacttaaaaatgagttgaatgtaaagttgtttatgtttg 218  Q
    |||||||||||| ||| |||||||  |||||| |||||||||| ||||||  ||||||||||    
T  12110984 aattgattttgtcaaattgattttggttaaaagtgagttgaatataaagtgatttatgtttg 12110923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 356
Target Start/End: Complemental strand, 13091873 - 13091816
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggttaagatgtggtgtc 356  Q
    |||| |||||| |||||||||| ||||| |||||||||||| | ||| ||||||||||    
T  13091873 ataaatgagagaacccataaactcaatgtcttaaggttttgtgctaaaatgtggtgtc 13091816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 356
Target Start/End: Original strand, 13365894 - 13365951
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggttaagatgtggtgtc 356  Q
    |||| ||||| || |||||||| |||||| ||||||||||| || |||||||||||||    
T  13365894 ataaatgagatgatccataaactcaatgcattaaggttttgtgtcaagatgtggtgtc 13365951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 13476001 - 13475952
Alignment:
Q  157 aattgattttgtaaaaatgattttacttaaaaatgagttgaatgtaaagt 206  Q
    |||||||||||| ||| |||||||||||| || ||| |||||||||||||    
T  13476001 aattgattttgttaaattgattttacttataagtgaattgaatgtaaagt 13475952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 362
Target Start/End: Original strand, 13766844 - 13766905
Alignment:
Q  301 aagtgagaggacccataaacccaatgccttaaggttttgggttaagatgtggtgtccaactc 362  Q
    |||||||| |||  |||||| ||||| |||||||||||| ||||| |||||||||| |||||    
T  13766844 aagtgagatgactaataaactcaatgacttaaggttttgtgttaaaatgtggtgtctaactc 13766905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 342
Target Start/End: Original strand, 30323522 - 30323563
Alignment:
Q  301 aagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    ||||||||||||| |||||| || ||||||||||||||||||    
T  30323522 aagtgagaggacctataaactcattgccttaaggttttgggt 30323563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 342
Target Start/End: Complemental strand, 35580540 - 35580499
Alignment:
Q  301 aagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    ||||| |||||||||||||| || ||||||||||||||||||    
T  35580540 aagtgtgaggacccataaactcattgccttaaggttttgggt 35580499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 37842572 - 37842633
Alignment:
Q  298 cataagtgagaggacccataaacccaatgccttaa-ggttttgggttaagatgtggtgtcca 358  Q
    ||||||||||||||| ||||||| ||||| ||||| |||||||||| | ||||| |||||||    
T  37842572 cataagtgagaggacacataaactcaatgtcttaatggttttgggtaatgatgttgtgtcca 37842633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 306 - 342
Target Start/End: Original strand, 6421794 - 6421830
Alignment:
Q  306 agaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||||||||||||| | ||||||||||||||||||    
T  6421794 agaggacccataaacctattgccttaaggttttgggt 6421830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 7659603 - 7659663
Alignment:
Q  156 aaattgattttgtaaaaatgattttacttaaaaatgagttgaatgtaaagttgtttatgtt 216  Q
    ||||||||||||| ||| |||||  ||||||| |||| |||||| |||||| |||||||||    
T  7659603 aaattgattttgtcaaattgattccacttaaagatgacttgaatctaaagtggtttatgtt 7659663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 306 - 342
Target Start/End: Complemental strand, 31468845 - 31468809
Alignment:
Q  306 agaggacccataaacccaatgccttaaggttttgggt 342  Q
    ||||||||||||||| || ||||||||||||||||||    
T  31468845 agaggacccataaactcattgccttaaggttttgggt 31468809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 305 - 379
Target Start/End: Complemental strand, 50329428 - 50329354
Alignment:
Q  305 gagaggacccataaacccaatgccttaaggttttgggttaagatgtggtgtccaactcacctgcgtggttgctct 379  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||| ||  ||||||||||    
T  50329428 gagaggacccataaatccaatgccttaaggttttgggttaagacgtggtgtcaaactcacttgtttggttgctct 50329354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 311 - 377
Target Start/End: Original strand, 41857492 - 41857558
Alignment:
Q  311 acccataaacccaatgccttaaggttttgggttaagatgtggtgtccaactcacctgcgtggttgct 377  Q
    |||||||||| ||||| ||||| |||||||||||||||||| ||| |||||||| || |||||||||    
T  41857492 acccataaactcaatgacttaaagttttgggttaagatgtgatgttcaactcacttgtgtggttgct 41857558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 303 - 364
Target Start/End: Complemental strand, 21868045 - 21867984
Alignment:
Q  303 gtgagaggacccataaacccaatgccttaaggttttgggttaagatgtggtgtccaactcac 364  Q
    ||||||||||||| ||| |||||||||||||||||  | | |||||||||||||||||||||    
T  21868045 gtgagaggacccacaaagccaatgccttaaggtttgtgatgaagatgtggtgtccaactcac 21867984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 298 - 379
Target Start/End: Complemental strand, 45717912 - 45717831
Alignment:
Q  298 cataagtgagaggacccataaacccaatgccttaaggttttgggttaagatgtggtgtccaactcacctgcgtggttgctct 379  Q
    ||||||||||| || ||||||| | ||||||||| ||||||| || |||||||||||||||||| || ||  ||||||||||    
T  45717912 cataagtgagatgatccataaatcaaatgccttagggttttgagtgaagatgtggtgtccaacttacttgtatggttgctct 45717831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 32589759 - 32589802
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| |||||||||||||||||| ||||||||||||||||||    
T  32589759 ataagtaagaggacccataaacccattgccttaaggttttgggt 32589802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 41359867 - 41359824
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| |||||||||||||||||| ||||||||||||||||||    
T  41359867 ataagtaagaggacccataaacccattgccttaaggttttgggt 41359824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 47964620 - 47964577
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    ||||||||||||||||||||||| | ||||||||||||||||||    
T  47964620 ataagtgagaggacccataaacctattgccttaaggttttgggt 47964577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 345
Target Start/End: Original strand, 25991459 - 25991505
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggttaa 345  Q
    ||||||||||| ||| ||||||| |||||||||||||||||||||||    
T  25991459 ataagtgagagaacctataaacctaatgccttaaggttttgggttaa 25991505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 42644364 - 42644302
Alignment:
Q  157 aattgattttgtaaaaat-gattttacttaaaaatgagttgaatgtaaagttgtttatgtttg 218  Q
    |||||||||| ||||||| ||||||| |||||| |||||||||||||||||  ||||||||||    
T  42644364 aattgattttataaaaattgattttagttaaaagtgagttgaatgtaaagtgatttatgtttg 42644302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 301 - 342
Target Start/End: Complemental strand, 22303759 - 22303718
Alignment:
Q  301 aagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||| |||||||||||||||||| ||||||||||||||||||    
T  22303759 aagtaagaggacccataaacccattgccttaaggttttgggt 22303718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 34457219 - 34457275
Alignment:
Q  161 gattttgtaaaaatgattttacttaaaaatgagttgaatgtaaagttgtttatgtttg 218  Q
    |||| ||||||| ||||||| ||||||||||||||||| ||||||| |||||||||||    
T  34457219 gattatgtaaaattgattttgcttaaaaatgagttgaa-gtaaagtagtttatgtttg 34457275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 299 - 356
Target Start/End: Original strand, 35946578 - 35946635
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggttaagatgtggtgtc 356  Q
    |||||| |||||||||||||||||  |||||||||||||||||| ||  |||||||||    
T  35946578 ataagtaagaggacccataaacccgttgccttaaggttttgggtaaaagtgtggtgtc 35946635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 135 - 218
Target Start/End: Original strand, 10852690 - 10852774
Alignment:
Q  135 tgtttggttatgcggtaacaaaaattgattttg-taaaaatgattttacttaaaaatgagttgaatgtaaagttgtttatgtttg 218  Q
    ||||||||| ||||||   |||||||||||||| || || |||||||  |||||| |||||||||||||||||  ||||||||||    
T  10852690 tgtttggttgtgcggtggaaaaaattgattttggtataattgattttggttaaaagtgagttgaatgtaaagtgatttatgtttg 10852774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 1634416 - 1634373
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| |||||||||||||||||| || |||||||||||||||    
T  1634416 ataagtaagaggacccataaacccattggcttaaggttttgggt 1634373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 12114664 - 12114621
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| |||||||||||||||||| || |||||||||||||||    
T  12114664 ataagtaagaggacccataaacccattgtcttaaggttttgggt 12114621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 22304625 - 22304668
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| ||||||||||||||| || ||||||||||||||||||    
T  22304625 ataagtaagaggacccataaacacattgccttaaggttttgggt 22304668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 29645004 - 29644961
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| |||||||||||||||||| || |||||||||||||||    
T  29645004 ataagtaagaggacccataaacccattgtcttaaggttttgggt 29644961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 54018300 - 54018257
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| |||||||||||||||| || |||||||||||||||||    
T  54018300 ataagtaagaggacccataaacctaacgccttaaggttttgggt 54018257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 309 - 379
Target Start/End: Original strand, 50329645 - 50329715
Alignment:
Q  309 ggacccataaacccaatgccttaaggttttgggttaagatgtggtgtccaactcacctgcgtggttgctct 379  Q
    ||||| ||||| ||||||   |||| |||||||| ||||||||||||||||| ||| || |||||||||||    
T  50329645 ggaccaataaatccaatgttgtaagcttttgggtgaagatgtggtgtccaacccacttgtgtggttgctct 50329715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 52925550 - 52925612
Alignment:
Q  156 aaattgattttgtaaaaatgattttacttaaaaatgagttgaatgtaaagttgtttatgtttg 218  Q
    ||||||||||||||||| ||||| |   ||||| ||||||||| ||||||| |||||||||||    
T  52925550 aaattgattttgtaaaattgattctcactaaaattgagttgaaagtaaagtggtttatgtttg 52925612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 830047 - 830107
Alignment:
Q  159 ttgattttgtaaaaatgattttacttaaaa--atgagttgaatgtaaagttgtttatgttt 217  Q
    |||| ||||||||| |||||||||| ||||  |||||||||||||||||| || |||||||    
T  830047 ttgaatttgtaaaattgattttactaaaaaaaatgagttgaatgtaaagtggtctatgttt 830107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 340
Target Start/End: Complemental strand, 22304057 - 22304016
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgg 340  Q
    |||||| || ||||||||||||||| ||||||||||||||||    
T  22304057 ataagtaagcggacccataaacccattgccttaaggttttgg 22304016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 25181311 - 25181250
Alignment:
Q  157 aattgattttgtaaaaatgattttacttaaaaatgagttgaatgtaaagttgtttatgtttg 218  Q
    ||||||||||||| || |||||||  |||||| |||||| |||||||| || ||||||||||    
T  25181311 aattgattttgtagaattgattttgattaaaagtgagtttaatgtaaaattatttatgtttg 25181250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 41115290 - 41115351
Alignment:
Q  157 aattgattttgtaaaaatgattttacttaaaaatgagttgaatgtaaagttgtttatgtttg 218  Q
    ||||||||||||| || |||||||   ||| ||||||||||||||||| | |||||||||||    
T  41115290 aattgattttgtataattgattttggctaacaatgagttgaatgtaaaatggtttatgtttg 41115351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 44225666 - 44225605
Alignment:
Q  157 aattgattttgtaaaaatgattttacttaaaaatgagttgaatgtaaagttgtttatgtttg 218  Q
    ||||||||||||| || |||||||  |||||| |||||| ||||||||||  ||||||||||    
T  44225666 aattgattttgtagaattgattttcgttaaaagtgagtttaatgtaaagtgatttatgtttg 44225605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 27825270 - 27825302
Alignment:
Q  135 tgtttggttatgcggtaacaaaaattgattttg 167  Q
    |||||||||||||||||||| ||||||||||||    
T  27825270 tgtttggttatgcggtaacacaaattgattttg 27825302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 306 - 342
Target Start/End: Original strand, 39389133 - 39389169
Alignment:
Q  306 agaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||||||||||||||| || |||||||||||||||    
T  39389133 agaggacccataaacccattgtcttaaggttttgggt 39389169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 39657997 - 39658045
Alignment:
Q  156 aaattgattttgtaaaaatgattttacttaaaaatgagttgaatgtaaa 204  Q
    ||||||||| ||||||| ||||||||||||||| |  ||||||||||||    
T  39657997 aaattgattatgtaaaattgattttacttaaaagttcgttgaatgtaaa 39658045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 319 - 359
Target Start/End: Original strand, 41801720 - 41801760
Alignment:
Q  319 acccaatgccttaaggttttgggttaagatgtggtgtccaa 359  Q
    |||||||| ||||| |||||||||||| |||||||||||||    
T  41801720 acccaatgtcttaatgttttgggttaaaatgtggtgtccaa 41801760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 310 - 342
Target Start/End: Original strand, 52634742 - 52634774
Alignment:
Q  310 gacccataaacccaatgccttaaggttttgggt 342  Q
    |||||||||||||| ||||||||||||||||||    
T  52634742 gacccataaacccattgccttaaggttttgggt 52634774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 304 - 395
Target Start/End: Original strand, 30208187 - 30208279
Alignment:
Q  304 tgagaggacccataaacccaatgccttaaggttttgggttaagatgtggtgtcc-aactcacctgcgtggttgctctgggcccaatgtggatg 395  Q
    ||||||||||| ||||| |||||| |||||||||||||||||  |||||||||| ||||||| |||  |||||||||| ||||||||||||||    
T  30208187 tgagaggacccttaaactcaatgcattaaggttttgggttaaagtgtggtgtccaaactcacttgccaggttgctctgagcccaatgtggatg 30208279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 134 - 227
Target Start/End: Original strand, 46547981 - 46548072
Alignment:
Q  134 atgtttggttatgcggtaacaaaaattgattttgta-aaaatgattttacttaaaaatgagttgaatgtaaagttgtttatgtttgaatgtattt 227  Q
    ||||||| |||||||||||||||||||||||||| |  || |||||||||||||||   ||||||||||||||| ||||||| ||| ||||||||    
T  46547981 atgtttgattatgcggtaacaaaaattgattttgaattaattgattttacttaaaa---agttgaatgtaaagtggtttatgcttggatgtattt 46548072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 299 - 380
Target Start/End: Complemental strand, 47057808 - 47057727
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggttaagatgtggtgtccaactcacctgcgtggttgctctg 380  Q
    ||||||||||||||| ||| |||||| | ||||| ||||||||| |||||||||| | |||||||| || ||||||||||||    
T  47057808 ataagtgagaggacctatatacccaaagtcttaaagttttgggtgaagatgtggtatacaactcacttgtgtggttgctctg 47057727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 299 - 379
Target Start/End: Complemental strand, 2229362 - 2229282
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggttaagatgtggtgtccaactcacctgcgtggttgctct 379  Q
    |||||||||||||| |||||||| |||||||||| |||||| ||||||||||||||| | ||| |  || |||||||||||    
T  2229362 ataagtgagaggactcataaaccaaatgccttaaagttttgagttaagatgtggtgttcgactgagttgtgtggttgctct 2229282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 303 - 390
Target Start/End: Original strand, 30207865 - 30207952
Alignment:
Q  303 gtgagaggacccataaacccaatgccttaaggttttgggttaagatgtggtgtccaa-ctcacctgcgtggttgctctgggcccaatgt 390  Q
    ||||||||| ||||||||| | ||||||||||||||||||||   |||||| ||||| |||||||| |||||||||||| |||||||||    
T  30207865 gtgagaggatccataaacc-actgccttaaggttttgggttacagtgtggtatccaaactcacctgtgtggttgctctgagcccaatgt 30207952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 299 - 355
Target Start/End: Complemental strand, 44290927 - 44290870
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggttaaga-tgtggtgt 355  Q
    |||||| |||||||||||||||||| |||||||||||||||||| |||| ||||||||    
T  44290927 ataagtaagaggacccataaacccattgccttaaggttttgggtaaagagtgtggtgt 44290870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 342
Target Start/End: Original strand, 17294628 - 17294676
Alignment:
Q  294 acttcataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||| |||||| |||||||||||||||||| ||||||||||||||||||    
T  17294628 actttataagtaagaggacccataaacccattgccttaaggttttgggt 17294676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 26661624 - 26661581
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||||||||||||||||||| || ||||||||||||||||||    
T  26661624 ataagtgagaggacccataaactcattgccttaaggttttgggt 26661581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 44290560 - 44290517
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| |||||||||||||||||| ||||||||||||||||||    
T  44290560 ataagtaagaggacccataaacccattgccttaaggttttgggt 44290517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 364
Target Start/End: Complemental strand, 8240466 - 8240400
Alignment:
Q  299 ataagtgagaggacccataaacccaatgcctta-aggttttgggttaagatgtggtgtccaactcac 364  Q
    |||||||| |||| | ||||  ||||||||||  |||||||||||||||||||||||||||||||||    
T  8240466 ataagtgaaaggatcaataagtccaatgcctttcaggttttgggttaagatgtggtgtccaactcac 8240400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 4347099 - 4347038
Alignment:
Q  157 aattgattttgtaaaaatgattttacttaaaaatgagttgaatgtaaagttgtttatgtttg 218  Q
    ||||||||||||| || |||||||  |||||| |||||||||||||||||  ||||||||||    
T  4347099 aattgattttgtagaattgattttggttaaaagtgagttgaatgtaaagtgatttatgtttg 4347038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 34571088 - 34571157
Alignment:
Q  135 tgtttggttatgcggtaacaaaaattgatttt-gtaaaaatgattttacttaaaaatgagttgaatgtaa 203  Q
    |||||||||||||||| |||||||||||||||  ||||| ||||| |  |||||| ||||||||||||||    
T  34571088 tgtttggttatgcggtgacaaaaattgattttcataaaattgattctgattaaaagtgagttgaatgtaa 34571157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 6953498 - 6953542
Alignment:
Q  184 taaaaatgagttgaatgtaaagttgtttatgtttgaatgtattta 228  Q
    ||||||||||| ||||||||| | |||||||||||||||||||||    
T  6953498 taaaaatgagtagaatgtaaaatggtttatgtttgaatgtattta 6953542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 18325317 - 18325377
Alignment:
Q  157 aattgattttgtaaaaatgattttacttaaaaatgagttgaatgtaaagttgtttatgttt 217  Q
    ||||| |||||||||| ||||||||| ||||| ||||||||||||||| | |||| |||||    
T  18325317 aattggttttgtaaaattgattttacataaaagtgagttgaatgtaaaatggtttctgttt 18325377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 5320067 - 5320024
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||||||||||||||||||| ||  |||||||||||||||||    
T  5320067 ataagtgagaggacccataaactcatagccttaaggttttgggt 5320024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 223
Target Start/End: Original strand, 7335899 - 7335946
Alignment:
Q  176 attttacttaaaaatgagttgaatgtaaagttgtttatgtttgaatgt 223  Q
    |||||| |||||| |||||||||||||||||  |||||||||||||||    
T  7335899 attttagttaaaagtgagttgaatgtaaagtgatttatgtttgaatgt 7335946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 26662000 - 26661957
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||||||| |||||||||||| | ||||||||||||||||||    
T  26662000 ataagtgagaagacccataaaccgattgccttaaggttttgggt 26661957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 31767263 - 31767220
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| ||||||||||| |||| ||||||||||||||||||||    
T  31767263 ataagtaagaggacccattaacctaatgccttaaggttttgggt 31767220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 34364981 - 34365024
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| ||||||||||||||||||  |||||||||||||||||    
T  34364981 ataagtaagaggacccataaacccatagccttaaggttttgggt 34365024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 337
Target Start/End: Complemental strand, 41184532 - 41184489
Alignment:
Q  294 acttcataagtgagaggacccataaacccaatgccttaaggttt 337  Q
    |||| |||||| |||||||||||||||||| |||||||||||||    
T  41184532 actttataagtaagaggacccataaacccattgccttaaggttt 41184489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 47981794 - 47981857
Alignment:
Q  155 aaaattgattttgtaaaaatgattttacttaaaaatgagttgaatgtaaagttgtttatgtttg 218  Q
    |||||||||||||||||| | |||||  |||||| |||||||||| ||||||  ||||||||||    
T  47981794 aaaattgattttgtaaaattaattttggttaaaattgagttgaatttaaagtgatttatgtttg 47981857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 315 - 397
Target Start/End: Original strand, 37170066 - 37170148
Alignment:
Q  315 ataaacccaatgccttaaggttttgggttaagatgtggtgtccaactcacctgcgtggttgctctgggcccaatgtggatgat 397  Q
    |||||| ||||||||| ||||||||| |||| || ||||||  ||||||| |  |||||| |||| ||| |||||||||||||    
T  37170066 ataaactcaatgccttgaggttttggattaaaatatggtgtttaactcacttatgtggtttctcttggctcaatgtggatgat 37170148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 13344898 - 13344837
Alignment:
Q  157 aattgattttgtaaaaatgattttacttaaaaatgagttgaatgtaaagttgtttatgtttg 218  Q
    ||||||||||||| || |||||||  |||||| ||||||||| |||||||  ||||||||||    
T  13344898 aattgattttgtagaattgattttggttaaaagtgagttgaacgtaaagtgatttatgtttg 13344837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 299 - 359
Target Start/End: Complemental strand, 26231757 - 26231697
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggttaagatgtggtgtccaa 359  Q
    ||||| ||| ||||||||| ||| | | ||||||||||||||||  |||||||||||||||    
T  26231757 ataagagaggggacccatataccaattaccttaaggttttgggtggagatgtggtgtccaa 26231697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 306 - 342
Target Start/End: Complemental strand, 32168793 - 32168757
Alignment:
Q  306 agaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||||||||||||||| |||||| |||||||||||    
T  32168793 agaggacccataaacccattgccttgaggttttgggt 32168757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 299 - 347
Target Start/End: Original strand, 41142428 - 41142476
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggttaaga 347  Q
    |||||| | |||||||||||||||| |||||||||||||| ||| ||||    
T  41142428 ataagtaaaaggacccataaacccattgccttaaggtttttggtaaaga 41142476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 41157431 - 41157471
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttg 339  Q
    |||||| |||||||||||||||||| |||||| ||||||||    
T  41157431 ataagtaagaggacccataaacccattgcctttaggttttg 41157471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 32445943 - 32445998
Alignment:
Q  301 aagtgagaggacccataaacccaatgccttaaggttttgggttaagatgtggtgtc 356  Q
    |||||||||||||||||||||||| ||||||||||||||||||||  |||||||||    
T  32445943 aagtgagaggacccataaacccaacgccttaaggttttgggttaaagtgtggtgtc 32445998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 299 - 347
Target Start/End: Complemental strand, 26075264 - 26075216
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggttaaga 347  Q
    |||||| |||||||||||||||||| |||||||||||||||||| ||||    
T  26075264 ataagtaagaggacccataaacccattgccttaaggttttgggtaaaga 26075216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 388
Target Start/End: Complemental strand, 37313001 - 37312945
Alignment:
Q  332 aggttttgggttaagatgtggtgtccaactcacctgcgtggttgctctgggcccaat 388  Q
    |||||||||||||| ||||||| ||||||||| |||  |||||||||||||||||||    
T  37313001 aggttttgggttaaaatgtggtttccaactcatctgtatggttgctctgggcccaat 37312945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 18603222 - 18603179
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| |||||||||||||||||| ||||||||||||||||||    
T  18603222 ataagtaagaggacccataaacccattgccttaaggttttgggt 18603179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 25327991 - 25328034
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| |||||||||||||||| ||||||||||||||||||||    
T  25327991 ataagtaagaggacccataaacctaatgccttaaggttttgggt 25328034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 26074668 - 26074711
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| |||||||||||||||||| ||||||||||||||||||    
T  26074668 ataagtaagaggacccataaacccattgccttaaggttttgggt 26074711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 32487449 - 32487492
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| |||||||||||||||||| ||||||||||||||||||    
T  32487449 ataagtaagaggacccataaacccattgccttaaggttttgggt 32487492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 41170690 - 41170733
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| |||||||||||||||||| ||||||||||||||||||    
T  41170690 ataagtaagaggacccataaacccattgccttaaggttttgggt 41170733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 157 - 228
Target Start/End: Original strand, 43438592 - 43438663
Alignment:
Q  157 aattgattttgtaaaaatgattttacttaaaaatgagttgaatgtaaagttgtttatgtttgaatgtattta 228  Q
    |||||||| ||||||| || |||||  ||||| |||||| ||||||||||| | ||||||||||||||||||    
T  43438592 aattgattatgtaaaattgtttttagataaaagtgagttaaatgtaaagttatctatgtttgaatgtattta 43438663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 6988278 - 6988206
Alignment:
Q  156 aaattgattttgtaaaaatgattttacttaaaaatgagttgaatgtaaagttgtttatgtttgaatgtattta 228  Q
    ||||||||||||||||| |||||||| |||||| | |||||||| |||| |  |||||||||  |||||||||    
T  6988278 aaattgattttgtaaaattgattttaattaaaagtaagttgaatttaaaatgatttatgtttagatgtattta 6988206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 9498756 - 9498713
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| |||||||||||||||||| ||||||||| ||||||||    
T  9498756 ataagtaagaggacccataaacccattgccttaagattttgggt 9498713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 10273265 - 10273332
Alignment:
Q  154 aaaaattgattttgtaaaaatgattttacttaaaaatgagttgaatgtaaagttgtttatgtttgaat 221  Q
    ||||||||||||||||||| | |||||||||| || |||||||||| |||| |  |||||| ||||||    
T  10273265 aaaaattgattttgtaaaattaattttacttataagtgagttgaatataaaatgatttatgcttgaat 10273332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 40296417 - 40296374
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| |||||||||||||||||| |||||| |||||||||||    
T  40296417 ataagtaagaggacccataaacccattgccttgaggttttgggt 40296374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 41632838 - 41632881
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| |||||||||||||||||||||| ||||| ||||||||    
T  41632838 ataagtaagaggacccataaacccaatgctttaagattttgggt 41632881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 157 - 223
Target Start/End: Original strand, 2868350 - 2868416
Alignment:
Q  157 aattgattttgtaaaaatgattttacttaaaaatgagttgaatgtaaagttgtttatgtttgaatgt 223  Q
    |||| |||||||| || |||||||| |||||| |||||||||||||||||  |||| ||||| ||||    
T  2868350 aattaattttgtagaattgattttagttaaaagtgagttgaatgtaaagtgatttaagtttggatgt 2868416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 19784911 - 19784861
Alignment:
Q  174 tgattttacttaaaaatgagttgaatgtaaagttgtttatgtttgaatgta 224  Q
    |||||||  |||||| ||||||||||||||||| ||||||||||| |||||    
T  19784911 tgattttggttaaaagtgagttgaatgtaaagtggtttatgtttggatgta 19784861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 342
Target Start/End: Complemental strand, 36521993 - 36521955
Alignment:
Q  304 tgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  36521993 tgagaggacccataaaccaattgccttaaggttttgggt 36521955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 340
Target Start/End: Complemental strand, 3295446 - 3295405
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgg 340  Q
    |||||| |||||||||||||||| | ||||||||||||||||    
T  3295446 ataagtaagaggacccataaaccaattgccttaaggttttgg 3295405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 342
Target Start/End: Complemental strand, 26074250 - 26074205
Alignment:
Q  297 tcataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    ||||| || ||||||||||| |||||| ||||||||||||||||||    
T  26074250 tcatatgtaagaggacccatgaacccattgccttaaggttttgggt 26074205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 38592392 - 38592308
Alignment:
Q  133 catgtttggttatgcggtaacaaaaattgattttgtaaaaatgattttacttaaaaatgagttgaatgtaaagttgtttatgtttg 218  Q
    ||||||||||| |  ||| | ||||||||||||||||||| |||| |||||| |||||||||  |||| ||||| |||||| ||||    
T  38592392 catgtttggttctttggtgataaaaattgattttgtaaaattgatattactt-aaaatgagtccaatgcaaagtggtttatatttg 38592308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 299 - 339
Target Start/End: Complemental strand, 11417079 - 11417039
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttg 339  Q
    |||||| |||||| ||||||||||| |||||||||||||||    
T  11417079 ataagtaagaggatccataaacccattgccttaaggttttg 11417039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 15370458 - 15370498
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttg 339  Q
    |||||| ||||||||||||||||||  ||||||||||||||    
T  15370458 ataagtaagaggacccataaacccatagccttaaggttttg 15370498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 19563774 - 19563818
Alignment:
Q  184 taaaaatgagttgaatgtaaagttgtttatgtttgaatgtattta 228  Q
    |||||||||| |||||||||| |  ||||||||||||||||||||    
T  19563774 taaaaatgagctgaatgtaaaatgatttatgtttgaatgtattta 19563818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 299 - 351
Target Start/End: Complemental strand, 31866078 - 31866026
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggttaagatgtg 351  Q
    |||||||||| ||||||||||  |||| |||||||||||||| | ||||||||    
T  31866078 ataagtgagaagacccataaattcaattccttaaggttttggataaagatgtg 31866026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 40910921 - 40910989
Alignment:
Q  160 tgattttgtaaaaatgattttacttaaaaatgagttgaatgtaaagttgtttatgtttgaatgtattta 228  Q
    ||||||||||||| | |||||   ||||| |||||||||||||| ||  ||||||| ||||||||||||    
T  40910921 tgattttgtaaaatttattttgaataaaagtgagttgaatgtaatgtgttttatgtatgaatgtattta 40910989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 42439246 - 42439310
Alignment:
Q  154 aaaaattgattttgtaaaaatgattttacttaaaaatgagttgaatgtaaagttgtttatgtttg 218  Q
    ||||||||||||||| ||| |||||||||||| || |||||||| |||  |||  ||||||||||    
T  42439246 aaaaattgattttgtgaaattgattttacttagaagtgagttgattgtggagtgatttatgtttg 42439310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 321 - 375
Target Start/End: Complemental strand, 23714940 - 23714886
Alignment:
Q  321 ccaatgccttaaggttttgggttaagatgtggtgtccaactcacctgcgtggttg 375  Q
    ||||||||||||| |||||||| ||||||||||||||||||||| || |||||||    
T  23714940 ccaatgccttaagattttgggtgaagatgtggtgtccaactcacttgtgtggttg 23714886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 311 - 377
Target Start/End: Complemental strand, 32568029 - 32567963
Alignment:
Q  311 acccataaacccaatgccttaaggttttgggttaagatgtggtgtccaactcacctgcgtggttgct 377  Q
    ||||| ||||| |||||||||||||||| ||||||||||||||||||||  ||| ||| ||||||||    
T  32568029 acccacaaacctaatgccttaaggttttaggttaagatgtggtgtccaatccacttgcatggttgct 32567963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 227
Target Start/End: Original strand, 1024632 - 1024723
Alignment:
Q  134 atgtttggttatgcggtaacaaaaattgattttgtaaaaat-gattttacttaaaaatgagttgaatgtaaagttgtttatgtttgaatgtattt 227  Q
    ||||||| |||||| ||||||||||||||| ||| |  ||| |||||||||||||||   |||||||||||||| ||||||| ||| ||||||||    
T  1024632 atgtttgattatgcagtaacaaaaattgatattgaattaattgattttacttaaaaa---gttgaatgtaaagtggtttatgcttggatgtattt 1024723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 342
Target Start/End: Complemental strand, 1085723 - 1085675
Alignment:
Q  294 acttcataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||| |||||| |||||||||||||||||| ||||||||||||||||||    
T  1085723 actttataagtaagaggacccataaacccattgccttaaggttttgggt 1085675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 214
Target Start/End: Original strand, 40795894 - 40795974
Alignment:
Q  134 atgtttggttatgcggtaacaaaaattgattttgtaaaaatgattttacttaaaaatgagttgaatgtaaagttgtttatg 214  Q
    |||||||||| |||  | ||||||||||||||||||||| |||| |||  ||||||||| ||||| ||||||| |||||||    
T  40795894 atgtttggttttgctttgacaaaaattgattttgtaaaattgatgttaggtaaaaatgaattgaaggtaaagtggtttatg 40795974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 7517636 - 7517679
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| |||||||||||||||||| ||||||||||||||||||    
T  7517636 ataagtaagaggacccataaacccattgccttaaggttttgggt 7517679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 22566764 - 22566721
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| |||||||||||||||||| ||||||||||||||||||    
T  22566764 ataagtaagaggacccataaacccattgccttaaggttttgggt 22566721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 299 - 376
Target Start/End: Complemental strand, 22768615 - 22768538
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggttaagatgtggtgtccaactcacctgcgtggttgc 376  Q
    |||| ||||||||||| || |||||||||||||||||||||  | || |||||||||| ||||||  || ||||||||    
T  22768615 ataaatgagaggacccgtatacccaatgccttaaggttttgattgaacatgtggtgtctaactcatttgtgtggttgc 22768538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 299 - 356
Target Start/End: Complemental strand, 37533112 - 37533056
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggttaagatgtggtgtc 356  Q
    |||||| ||||||||||||||| || |||||||||||||||||| ||| |||||||||    
T  37533112 ataagtaagaggacccataaactcattgccttaaggttttgggtaaag-tgtggtgtc 37533056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 299 - 355
Target Start/End: Complemental strand, 36939835 - 36939779
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggttaagatgtggtgt 355  Q
    |||||| |||||||||||||| ||| |||||||||||||||||| ||  ||||||||    
T  36939835 ataagtaagaggacccataaatccattgccttaaggttttgggtaaaagtgtggtgt 36939779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 23479 - 23436
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| |||||||||||||||| | ||||||||||||||||||    
T  23479 ataagtaagaggacccataaacctattgccttaaggttttgggt 23436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 6054616 - 6054659
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| ||||||||||||||| || ||||||||||||||||||    
T  6054616 ataagtaagaggacccataaacacattgccttaaggttttgggt 6054659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 16569252 - 16569291
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggtttt 338  Q
    |||||| |||||||||||||||||| ||||||||||||||    
T  16569252 ataagtaagaggacccataaacccattgccttaaggtttt 16569291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 16596410 - 16596371
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggtttt 338  Q
    |||||| |||||||||||||||||| ||||||||||||||    
T  16596410 ataagtaagaggacccataaacccattgccttaaggtttt 16596371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 30244326 - 30244369
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| ||||||| |||||||||| ||||||||||||||||||    
T  30244326 ataagtaagaggactcataaacccattgccttaaggttttgggt 30244369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 34218136 - 34218093
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||||||||||| |||||||||| || |||||||||||||||    
T  34218136 ataagtgagaggactcataaacccattgtcttaaggttttgggt 34218093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 37533466 - 37533423
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| |||||||||||||| ||| ||||||||||||||||||    
T  37533466 ataagtaagaggacccataaatccattgccttaaggttttgggt 37533423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 217
Target Start/End: Original strand, 5489823 - 5489857
Alignment:
Q  183 ttaaaaatgagttgaatgtaaagttgtttatgttt 217  Q
    ||||||||||||||||||||||||| |||||||||    
T  5489823 ttaaaaatgagttgaatgtaaagttatttatgttt 5489857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 364
Target Start/End: Original strand, 7192786 - 7192836
Alignment:
Q  314 cataaacccaatgccttaaggttttgggttaagatgtggtgtccaactcac 364  Q
    ||||||| ||||| |||||||||||| || |||||||| ||||||||||||    
T  7192786 cataaactcaatgtcttaaggttttgagtaaagatgtgatgtccaactcac 7192836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 294 - 356
Target Start/End: Complemental strand, 45679540 - 45679478
Alignment:
Q  294 acttcataagtgagaggacccataaacccaatgccttaaggttttgggttaagatgtggtgtc 356  Q
    |||| ||||||||||||||| ||||||  ||| |||||| |||||||||||  ||||||||||    
T  45679540 actttataagtgagaggacctataaacttaataccttaaagttttgggttataatgtggtgtc 45679478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 342
Target Start/End: Complemental strand, 1085352 - 1085307
Alignment:
Q  297 tcataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||||| |||| |||||||||| || ||||||||||||||||||    
T  1085352 tcataagtaagagaacccataaactcattgccttaaggttttgggt 1085307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 340
Target Start/End: Original strand, 11845247 - 11845288
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgg 340  Q
    |||||| |||||||||||||| ||| ||||||||||||||||    
T  11845247 ataagtaagaggacccataaatccattgccttaaggttttgg 11845288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 359
Target Start/End: Complemental strand, 45335573 - 45335508
Alignment:
Q  294 acttcataagtgagaggacccataaacccaatgccttaaggttttgggttaagatgtggtgtccaa 359  Q
    |||| ||||||||||| ||||||||||   ||||||||||||| ||   |||||||||||||||||    
T  45335573 actttataagtgagagaacccataaacattatgccttaaggttgtgacctaagatgtggtgtccaa 45335508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 7169062 - 7168990
Alignment:
Q  157 aattgattttgtaaaaatgattttacttaaaaatgagttgaatgtaaagttgtttatgtttgaatgtatttag 229  Q
    |||||||||| | ||| |||||||  |||||| ||||||||||||||||| |||||  ||| ||| |||||||    
T  7169062 aattgattttttgaaattgattttggttaaaagtgagttgaatgtaaagtggtttacattttaatatatttag 7168990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 30416287 - 30416255
Alignment:
Q  135 tgtttggttatgcggtaacaaaaattgattttg 167  Q
    |||||||||||||||| ||||||||||||||||    
T  30416287 tgtttggttatgcggttacaaaaattgattttg 30416255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 218
Target Start/End: Complemental strand, 38494361 - 38494277
Alignment:
Q  135 tgtttggttatgcggtaacaaaaattgattttgtaaaaat-gattttacttaaaaatgagttgaatgtaaagttgtttatgtttg 218  Q
    ||||||||| ||||||  | ||||||||||||||   ||| ||||||  |||||| |||||||||||| |||| |||||||||||    
T  38494361 tgtttggttgtgcggtggcgaaaattgattttgtttgaattgattttggttaaaagtgagttgaatgtgaagtggtttatgtttg 38494277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0248 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 147 - 204
Target Start/End: Original strand, 13265 - 13322
Alignment:
Q  147 cggtaacaaaaattgattttgtaaaaatgattttacttaaaaatgagttgaatgtaaa 204  Q
    |||| ||||||||||||||||||||| ||||| || |||||| |||||||||||||||    
T  13265 cggtgacaaaaattgattttgtaaaattgattatatttaaaattgagttgaatgtaaa 13322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 299 - 356
Target Start/End: Complemental strand, 10074093 - 10074036
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggttaagatgtggtgtc 356  Q
    |||||| |||||||||||||||||| |||||||||||||||||| ||  |||||||||    
T  10074093 ataagtaagaggacccataaacccattgccttaaggttttgggtaaaagtgtggtgtc 10074036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 2377810 - 2377853
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| |||||||||||||||||| ||||||||||||||||||    
T  2377810 ataagtaagaggacccataaacccattgccttaaggttttgggt 2377853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 299 - 356
Target Start/End: Complemental strand, 2579974 - 2579917
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggttaagatgtggtgtc 356  Q
    |||||| ||||||||||||||||||  ||||||||||||||||| |  ||||||||||    
T  2579974 ataagtaagaggacccataaacccacagccttaaggttttgggtaagaatgtggtgtc 2579917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 342
Target Start/End: Complemental strand, 2578550 - 2578502
Alignment:
Q  294 acttcataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||| |||||| ||||||||||||||||||  |||||||||||||||||    
T  2578550 actttataagtaagaggacccataaacccatagccttaaggttttgggt 2578502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 379
Target Start/End: Complemental strand, 18089978 - 18089922
Alignment:
Q  323 aatgccttaaggttttgggttaagatgtggtgtccaactcacctgcgtggttgctct 379  Q
    |||||||||||||||||||| ||||||||||||| | |||||||  || ||||||||    
T  18089978 aatgccttaaggttttgggtgaagatgtggtgtcaatctcacctctgtagttgctct 18089922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 34073460 - 34073520
Alignment:
Q  157 aattgattttgtaaaaatgattttacttaaaaatgagttgaatgtaaagttgtttatgttt 217  Q
    |||| ||| ||||||| |||||   |||||||||||||||||||||||||| |||||||||    
T  34073460 aattaattatgtaaaattgattccgcttaaaaatgagttgaatgtaaagttatttatgttt 34073520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 3409315 - 3409358
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| ||||||||||||||| || ||||||||||||||||||    
T  3409315 ataagtaagaggacccataaactcattgccttaaggttttgggt 3409358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 3415514 - 3415553
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggtttt 338  Q
    |||||| |||||||||||||||||| ||||||||||||||    
T  3415514 ataagtaagaggacccataaacccattgccttaaggtttt 3415553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 10074465 - 10074422
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| ||||||||||||||| || ||||||||||||||||||    
T  10074465 ataagtaagaggacccataaactcattgccttaaggttttgggt 10074422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 16107734 - 16107777
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| ||||||| |||||||||| ||||||||||||||||||    
T  16107734 ataagtaagaggactcataaacccattgccttaaggttttgggt 16107777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 29518559 - 29518602
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| |||||||||||||||||| | ||||||||||||||||    
T  29518559 ataagtaagaggacccataaacccattaccttaaggttttgggt 29518602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 29518976 - 29519019
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| |||||||||||||||||| | ||||||||||||||||    
T  29518976 ataagtaagaggacccataaacccattaccttaaggttttgggt 29519019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 32460682 - 32460639
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| ||||||| |||||||||| ||||||||||||||||||    
T  32460682 ataagtaagaggactcataaacccattgccttaaggttttgggt 32460639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 32741235 - 32741278
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| |||||||||||||||||| | ||||||||||||||||    
T  32741235 ataagtaagaggacccataaacccattaccttaaggttttgggt 32741278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 342
Target Start/End: Original strand, 35210260 - 35210303
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| |||||||||||||| ||| ||||||||||||||||||    
T  35210260 ataagtaagaggacccataaaaccattgccttaaggttttgggt 35210303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 157 - 219
Target Start/End: Original strand, 10054992 - 10055054
Alignment:
Q  157 aattgattttgtaaaaatgattttacttaaaaatgagttgaatgtaaagttgtttatgtttga 219  Q
    ||||| |||||||||| |||| ||| |||||| |||||||  |||||||| ||||||||||||    
T  10054992 aattggttttgtaaaattgatattagttaaaattgagttgcttgtaaagtggtttatgtttga 10055054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 157 - 231
Target Start/End: Original strand, 10874208 - 10874282
Alignment:
Q  157 aattgattttgtaaaaatgattttacttaaaaatgagttgaatgtaaagttgtttatgtttgaatgtatttaggt 231  Q
    |||| |||||||| || ||||||||  ||||  |||||||||||| |||| ||||||||||| || |||||||||    
T  10874208 aattaattttgtataattgattttaggtaaatgtgagttgaatgtgaagtggtttatgtttggatatatttaggt 10874282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 379
Target Start/End: Complemental strand, 405112 - 405043
Alignment:
Q  310 gacccataaacccaatgccttaaggttttgggttaagatgtggtgtccaactcacctgcgtggttgctct 379  Q
    ||||||||||  ||| ||||||| ||||| ||||||| |||||||| |||||||| |  |||||||||||    
T  405112 gacccataaaatcaaagccttaaagttttaggttaaggtgtggtgttcaactcactttagtggttgctct 405043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 356
Target Start/End: Original strand, 2378182 - 2378239
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggttaagatgtggtgtc 356  Q
    |||||| |||||||||||||||||| | |||||||||||| ||| |  ||||||||||    
T  2378182 ataagtaagaggacccataaacccattaccttaaggttttaggtaagaatgtggtgtc 2378239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 363
Target Start/End: Original strand, 3624849 - 3624890
Alignment:
Q  322 caatgccttaaggttttgggttaagatgtggtgtccaactca 363  Q
    |||||||||||  ||||||||||||| |||||||||||||||    
T  3624849 caatgccttaaaattttgggttaagacgtggtgtccaactca 3624890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 379
Target Start/End: Complemental strand, 5034928 - 5034843
Alignment:
Q  294 acttcataagtgagaggacccataaacccaatgccttaaggttttgggttaagatgtggtgtccaactcacctgcgtggttgctct 379  Q
    |||| |||||||||| ||||||| ||| |||||  |||||||||||| | || || |||||| ||| |||| || |||||||||||    
T  5034928 actttataagtgagatgacccatcaactcaatgttttaaggttttggataaaaatatggtgtacaattcacttgtgtggttgctct 5034843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 12092589 - 12092544
Alignment:
Q  294 acttcataagtgagaggacccataaacccaatgccttaaggttttg 339  Q
    |||| ||||||||||||| |||||||| || |||||||||||||||    
T  12092589 actttataagtgagaggatccataaactcattgccttaaggttttg 12092544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 340
Target Start/End: Original strand, 16454631 - 16454672
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgg 340  Q
    |||||| |||||||||||||||||| ||||||||| ||||||    
T  16454631 ataagtaagaggacccataaacccattgccttaagattttgg 16454672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 2234162 - 2234194
Alignment:
Q  174 tgattttacttaaaaatgagttgaatgtaaagt 206  Q
    ||||||||||||||| |||||||||||||||||    
T  2234162 tgattttacttaaaagtgagttgaatgtaaagt 2234194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 294 - 346
Target Start/End: Original strand, 6498649 - 6498701
Alignment:
Q  294 acttcataagtgagaggacccataaacccaatgccttaaggttttgggttaag 346  Q
    |||| ||| |||||| ||| |||||||||||||| |||||||||||| |||||    
T  6498649 actttatatgtgagaagacacataaacccaatgctttaaggttttggcttaag 6498701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 20846491 - 20846420
Alignment:
Q  149 gtaacaaaaattgattttgtaaaaatgattttacttaaaaatgagttgaatgtaaagttgtttatgtttgaat 221  Q
    ||||||||||||||| | |||||| |  ||||| |||||||||||| ||||||||| |  |||||||||||||    
T  20846491 gtaacaaaaattgatat-gtaaaattagttttagttaaaaatgagtagaatgtaaaatgatttatgtttgaat 20846420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 311 - 355
Target Start/End: Complemental strand, 22605345 - 22605301
Alignment:
Q  311 acccataaacccaatgccttaaggttttgggttaagatgtggtgt 355  Q
    ||||||||||||| |||||||||||||||||| |  |||||||||    
T  22605345 acccataaacccattgccttaaggttttgggtaagaatgtggtgt 22605301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 25208326 - 25208370
Alignment:
Q  169 aaaaatgattttacttaaaaatgagttgaatgtaaagttgtttat 213  Q
    |||| |||||||  |||||||||| ||||||||||||||||||||    
T  25208326 aaaattgattttgattaaaaatgaattgaatgtaaagttgtttat 25208370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 26544105 - 26544145
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttg 339  Q
    |||||| ||||||||||||||||||  ||||||||||||||    
T  26544105 ataagtaagaggacccataaacccaccgccttaaggttttg 26544145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 31305752 - 31305796
Alignment:
Q  134 atgtttggttatgcggtaacaaaaattgattttgtaaaaatgatt 178  Q
    |||||||||||||||||  || ||||||||||||||||| |||||    
T  31305752 atgtttggttatgcggtgccagaaattgattttgtaaaattgatt 31305796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 299 - 342
Target Start/End: Complemental strand, 616 - 573
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggt 342  Q
    |||||| |||||||||||||||||| ||||||||||||||||||    
T  616 ataagtaagaggacccataaacccattgccttaaggttttgggt 573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 1793 - 1754
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggtttt 338  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  1793 ataagtgagaggacccataaacccattgccttaaggtttt 1754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 15257 - 15318
Alignment:
Q  157 aattgattttgtaaaaatgattttacttaaaaatgagttgaatgtaaagttgtttatgtttg 218  Q
    |||||||||||| ||| |||||||  |||||| |||||||||| ||||||  ||||||||||    
T  15257 aattgattttgtcaaattgattttggttaaaagtgagttgaatataaagtgatttatgtttg 15318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 340
Target Start/End: Original strand, 5413 - 5454
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgg 340  Q
    |||||| |||||||||||||||||| ||||||||| ||||||    
T  5413 ataagtaagaggacccataaacccattgccttaagattttgg 5454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 356
Target Start/End: Original strand, 47416 - 47473
Alignment:
Q  299 ataagtgagaggacccataaacccaatgccttaaggttttgggttaagatgtggtgtc 356  Q
    |||||| |||| | ||||||||||| |||||||| ||||||||| || ||||||||||    
T  47416 ataagtaagagaatccataaacccattgccttaaagttttgggtaaaaatgtggtgtc 47473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 65601 - 65540
Alignment:
Q  157 aattgattttgtaaaaatgattttacttaaaaatgagttgaatgtaaagttgtttatgtttg 218  Q
    |||||||| ||| ||| |||||||  ||||||||||||| ||||||||||  ||||||||||    
T  65601 aattgattctgtgaaattgattttggttaaaaatgagtttaatgtaaagtgatttatgtttg 65540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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