View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13181_low_53 (Length: 212)

Name: NF13181_low_53
Description: NF13181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13181_low_53
NF13181_low_53
[»] chr6 (14 HSPs)
chr6 (37-188)||(3974295-3974457)
chr6 (1-42)||(15716983-15717024)
chr6 (1-38)||(17217041-17217078)
chr6 (2-38)||(6228236-6228272)
chr6 (2-38)||(18903343-18903379)
chr6 (1-59)||(20821719-20821774)
chr6 (1-40)||(30260677-30260716)
chr6 (1-39)||(30422083-30422121)
chr6 (1-38)||(3200058-3200095)
chr6 (1-42)||(19748177-19748218)
chr6 (9-38)||(20415545-20415574)
chr6 (1-38)||(29321951-29321988)
chr6 (2-38)||(3974524-3974560)
chr6 (2-38)||(9763517-9763553)
[»] chr8 (8 HSPs)
chr8 (1-42)||(13906596-13906637)
chr8 (1-38)||(4259942-4259979)
chr8 (1-42)||(10162048-10162089)
chr8 (2-38)||(43413862-43413898)
chr8 (1-42)||(1360110-1360151)
chr8 (1-38)||(11052559-11052596)
chr8 (1-38)||(38289210-38289247)
chr8 (5-59)||(11919072-11919123)
[»] chr5 (11 HSPs)
chr5 (1-42)||(12375382-12375423)
chr5 (1-42)||(15696290-15696331)
chr5 (1-59)||(36037568-36037623)
chr5 (1-59)||(11784831-11784886)
chr5 (1-38)||(4395826-4395863)
chr5 (1-59)||(30487069-30487124)
chr5 (2-38)||(33545363-33545399)
chr5 (1-40)||(7671919-7671958)
chr5 (1-38)||(5263252-5263289)
chr5 (9-38)||(31250230-31250259)
chr5 (1-38)||(42208999-42209036)
[»] chr4 (18 HSPs)
chr4 (1-59)||(39719780-39719835)
chr4 (1-59)||(45281935-45281990)
chr4 (1-59)||(45630480-45630535)
chr4 (1-42)||(13210134-13210175)
chr4 (1-38)||(16556534-16556571)
chr4 (1-38)||(45355693-45355730)
chr4 (1-38)||(45369434-45369471)
chr4 (2-38)||(11491195-11491231)
chr4 (2-38)||(37574355-37574391)
chr4 (3-39)||(37889583-37889619)
chr4 (7-38)||(19688851-19688882)
chr4 (8-38)||(36993124-36993154)
chr4 (1-38)||(26885375-26885412)
chr4 (9-38)||(40406943-40406972)
chr4 (1-38)||(44251302-44251339)
chr4 (1-38)||(48404112-48404149)
chr4 (2-35)||(50815793-50815826)
chr4 (2-38)||(51974830-51974866)
[»] chr2 (11 HSPs)
chr2 (1-59)||(4632044-4632099)
chr2 (1-38)||(34107577-34107614)
chr2 (1-38)||(41750029-41750066)
chr2 (2-38)||(33065233-33065269)
chr2 (8-38)||(18424134-18424164)
chr2 (1-38)||(3330176-3330213)
chr2 (1-42)||(18949660-18949701)
chr2 (148-184)||(37905481-37905517)
chr2 (2-38)||(42541238-42541274)
chr2 (2-38)||(42998718-42998754)
chr2 (2-38)||(43027238-43027274)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-42)||(121769-121810)
[»] chr3 (21 HSPs)
chr3 (1-42)||(30162740-30162781)
chr3 (1-42)||(36590474-36590515)
chr3 (1-59)||(53733992-53734047)
chr3 (1-40)||(23156515-23156554)
chr3 (2-38)||(22602179-22602215)
chr3 (2-38)||(33528181-33528217)
chr3 (2-38)||(47864719-47864755)
chr3 (2-38)||(55426193-55426229)
chr3 (1-40)||(31902940-31902979)
chr3 (9-39)||(25165526-25165556)
chr3 (1-38)||(27394590-27394627)
chr3 (1-38)||(27817043-27817080)
chr3 (1-38)||(29645802-29645839)
chr3 (1-38)||(31435476-31435513)
chr3 (1-38)||(39739357-39739394)
chr3 (1-38)||(54457236-54457273)
chr3 (2-38)||(1102672-1102708)
chr3 (1-59)||(23155965-23156019)
chr3 (5-59)||(35343579-35343630)
chr3 (2-38)||(38668211-38668247)
chr3 (2-38)||(49429543-49429579)
[»] chr7 (13 HSPs)
chr7 (1-59)||(25965128-25965183)
chr7 (1-59)||(36388582-36388637)
chr7 (1-39)||(1576388-1576426)
chr7 (1-38)||(10091432-10091469)
chr7 (1-34)||(32986431-32986464)
chr7 (4-59)||(34238798-34238850)
chr7 (2-38)||(4956068-4956104)
chr7 (2-38)||(48433686-48433722)
chr7 (1-35)||(33413918-33413952)
chr7 (2-35)||(27454098-27454131)
chr7 (2-35)||(28914853-28914886)
chr7 (5-38)||(43440772-43440805)
chr7 (2-38)||(5228153-5228189)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-38)||(419795-419832)
[»] chr1 (16 HSPs)
chr1 (1-38)||(10123028-10123065)
chr1 (1-38)||(14262696-14262733)
chr1 (1-38)||(27054779-27054816)
chr1 (1-42)||(47651950-47651991)
chr1 (1-59)||(34661080-34661135)
chr1 (2-38)||(43109214-43109250)
chr1 (13-42)||(2017672-2017701)
chr1 (1-38)||(22386223-22386260)
chr1 (9-38)||(24134607-24134636)
chr1 (9-38)||(25031480-25031509)
chr1 (1-38)||(40061526-40061563)
chr1 (2-38)||(16985911-16985947)
chr1 (2-38)||(19424129-19424165)
chr1 (2-38)||(29332367-29332403)
chr1 (2-38)||(48497189-48497225)
chr1 (2-38)||(49620055-49620091)


Alignment Details
Target: chr6 (Bit Score: 84; Significance: 4e-40; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 37 - 188
Target Start/End: Complemental strand, 3974457 - 3974295
Alignment:
Q  37 aaatgagttaagctcatggggacatctatctctatattttatacacaacttaatgaatgnnnnnnnnnnn-----------gagaatgagaagaaataaa 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                      ||||||||||||||||| |    
T  3974457 aaatgagttaagctcatggggacatctatctctatattttatacacaacttaatgaatgaaaaaaaaaaaaaagagagagagagaatgagaagaaataga 3974358  T
Q  126 gtatccaaattgaataatgttaaatatcacgagaaaatgtctcgcgaatccgtcccgaccgaa 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3974357 gtatccaaattgaataatgttaaatatcacgagaaaatgtctcgcgaatccatcccgaccgaa 3974295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 15716983 - 15717024
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaaatga 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  15716983 tgtcaaatagcctagtggctagagaaattcaccttaaaatga 15717024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 17217078 - 17217041
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    |||||| |||||||||||||||||||||||||||||||    
T  17217078 tgtcaagtagcctagtggctagagaaattcaccttaaa 17217041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 6228236 - 6228272
Alignment:
Q  2 gtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    ||||| |||||||||||||||||||||||||||||||    
T  6228236 gtcaagtagcctagtggctagagaaattcaccttaaa 6228272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 18903343 - 18903379
Alignment:
Q  2 gtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    ||||| |||||||||||||||||||||||||||||||    
T  18903343 gtcaagtagcctagtggctagagaaattcaccttaaa 18903379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 20821719 - 20821774
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaaatgagttaagctcatggggac 59  Q
    |||||||||||||||| |||||||||||| ||||||||||    |||||||||||||||    
T  20821719 tgtcaaatagcctagtagctagagaaatttaccttaaaat---ctaagctcatggggac 20821774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 30260716 - 30260677
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaaat 40  Q
    |||||||||||||||| |||||||||||| ||||||||||    
T  30260716 tgtcaaatagcctagtagctagagaaatttaccttaaaat 30260677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 30422083 - 30422121
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaaa 39  Q
    |||||| |||||||||||| |||||||||||||||||||    
T  30422083 tgtcaagtagcctagtggccagagaaattcaccttaaaa 30422121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 3200058 - 3200095
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  3200058 tgtcaagtagcctattggctagagaaattcaccttaaa 3200095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 19748218 - 19748177
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaaatga 42  Q
    |||||| |||||||||||  ||||||||||||||||||||||    
T  19748218 tgtcaagtagcctagtggtcagagaaattcaccttaaaatga 19748177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 38
Target Start/End: Original strand, 20415545 - 20415574
Alignment:
Q  9 agcctagtggctagagaaattcaccttaaa 38  Q
    ||||||||||||||||||||||||||||||    
T  20415545 agcctagtggctagagaaattcaccttaaa 20415574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 29321951 - 29321988
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  29321951 tgtcaagtagtctagtggctagagaaattcaccttaaa 29321988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 3974560 - 3974524
Alignment:
Q  2 gtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    ||||||||||||||| | |||||||||||||||||||    
T  3974560 gtcaaatagcctagtagttagagaaattcaccttaaa 3974524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 9763553 - 9763517
Alignment:
Q  2 gtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  9763553 gtcaagtagcatagtggctagagaaattcaccttaaa 9763517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 13906596 - 13906637
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaaatga 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  13906596 tgtcaaatagcctagtggctagagaaattcaccttaaaatga 13906637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 4259979 - 4259942
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    |||||| |||||||||||||||||||||||||||||||    
T  4259979 tgtcaagtagcctagtggctagagaaattcaccttaaa 4259942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 10162089 - 10162048
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaaatga 42  Q
    |||||| || ||||||||||||||||||||||||||||||||    
T  10162089 tgtcaagtaacctagtggctagagaaattcaccttaaaatga 10162048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 43413862 - 43413898
Alignment:
Q  2 gtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    ||||| |||||||||||||||||||||||||||||||    
T  43413862 gtcaagtagcctagtggctagagaaattcaccttaaa 43413898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 1360110 - 1360151
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaaatga 42  Q
    |||||| ||||||||||| ||||||||||||| |||||||||    
T  1360110 tgtcaagtagcctagtggttagagaaattcactttaaaatga 1360151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 11052559 - 11052596
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    |||||| || ||||||||||||||||||||||||||||    
T  11052559 tgtcaagtaacctagtggctagagaaattcaccttaaa 11052596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 38289210 - 38289247
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  38289210 tgtcaagtagcttagtggctagagaaattcaccttaaa 38289247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 11919123 - 11919072
Alignment:
Q  5 aaatagcctagtggctagagaaattcaccttaaaatgagttaagctcatggggac 59  Q
    |||||||||||| |||||||||||| ||||||||||    |||||||||||||||    
T  11919123 aaatagcctagtagctagagaaatttaccttaaaat---ctaagctcatggggac 11919072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 12375382 - 12375423
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaaatga 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  12375382 tgtcaaatagcctagtggctagagaaattcaccttaaaatga 12375423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 15696331 - 15696290
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaaatga 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  15696331 tgtcaaatagcctagtggctagagaaattcaccttaaaatga 15696290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 36037568 - 36037623
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaaatgagttaagctcatggggac 59  Q
    ||||||||||||||||||||||||||||||||||||||||    |||||||||||||||    
T  36037568 tgtcaaatagcctagtggctagagaaattcaccttaaaat---ctaagctcatggggac 36037623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 11784886 - 11784831
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaaatgagttaagctcatggggac 59  Q
    |||||||||||||||||| |||||||||||||||||||||    |||||||||||||||    
T  11784886 tgtcaaatagcctagtggttagagaaattcaccttaaaat---ctaagctcatggggac 11784831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 4395826 - 4395863
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    |||||||||||||| |||||||||||||||||||||||    
T  4395826 tgtcaaatagcctattggctagagaaattcaccttaaa 4395863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 30487124 - 30487069
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaaatgagttaagctcatggggac 59  Q
    |||||||||||||||| |||||||||||| ||||||||||    |||||||||||||||    
T  30487124 tgtcaaatagcctagtagctagagaaatttaccttaaaat---ctaagctcatggggac 30487069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 33545363 - 33545399
Alignment:
Q  2 gtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    ||||| |||||||||||||||||||||||||||||||    
T  33545363 gtcaagtagcctagtggctagagaaattcaccttaaa 33545399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 7671919 - 7671958
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaaat 40  Q
    |||||||||||||||||| ||||||||||||| |||||||    
T  7671919 tgtcaaatagcctagtggttagagaaattcactttaaaat 7671958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 5263289 - 5263252
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  5263289 tgtcaagtagcctagtggctagagaaattcagcttaaa 5263252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 38
Target Start/End: Complemental strand, 31250259 - 31250230
Alignment:
Q  9 agcctagtggctagagaaattcaccttaaa 38  Q
    ||||||||||||||||||||||||||||||    
T  31250259 agcctagtggctagagaaattcaccttaaa 31250230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 42209036 - 42208999
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  42209036 tgtcaagtagcctagtgactagagaaattcaccttaaa 42208999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 39719780 - 39719835
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaaatgagttaagctcatggggac 59  Q
    ||||||||||||||||||||||||||||||||||||||||    |||||||||||||||    
T  39719780 tgtcaaatagcctagtggctagagaaattcaccttaaaat---ctaagctcatggggac 39719835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 45281990 - 45281935
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaaatgagttaagctcatggggac 59  Q
    |||||||||||||||||| |||||||||||||||||||||    |||||||||||||||    
T  45281990 tgtcaaatagcctagtggttagagaaattcaccttaaaat---ctaagctcatggggac 45281935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 45630535 - 45630480
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaaatgagttaagctcatggggac 59  Q
    |||||||||||||||||| |||||||||||||||||||||    |||||||||||||||    
T  45630535 tgtcaaatagcctagtggttagagaaattcaccttaaaat---ctaagctcatggggac 45630480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 13210134 - 13210175
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaaatga 42  Q
    |||||||| || ||||||||||||||||||||||||||||||    
T  13210134 tgtcaaattgcgtagtggctagagaaattcaccttaaaatga 13210175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 16556571 - 16556534
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    |||||| |||||||||||||||||||||||||||||||    
T  16556571 tgtcaagtagcctagtggctagagaaattcaccttaaa 16556534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 45355693 - 45355730
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    |||||| |||||||||||||||||||||||||||||||    
T  45355693 tgtcaagtagcctagtggctagagaaattcaccttaaa 45355730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 45369434 - 45369471
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    |||||| |||||||||||||||||||||||||||||||    
T  45369434 tgtcaagtagcctagtggctagagaaattcaccttaaa 45369471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 11491195 - 11491231
Alignment:
Q  2 gtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    ||||| |||||||||||||||||||||||||||||||    
T  11491195 gtcaagtagcctagtggctagagaaattcaccttaaa 11491231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 37574391 - 37574355
Alignment:
Q  2 gtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    ||||| |||||||||||||||||||||||||||||||    
T  37574391 gtcaagtagcctagtggctagagaaattcaccttaaa 37574355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 37889583 - 37889619
Alignment:
Q  3 tcaaatagcctagtggctagagaaattcaccttaaaa 39  Q
    |||| ||||||||||||||||||||||||||||||||    
T  37889583 tcaagtagcctagtggctagagaaattcaccttaaaa 37889619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 38
Target Start/End: Original strand, 19688851 - 19688882
Alignment:
Q  7 atagcctagtggctagagaaattcaccttaaa 38  Q
    ||||||||||||||||||||||||||||||||    
T  19688851 atagcctagtggctagagaaattcaccttaaa 19688882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 38
Target Start/End: Complemental strand, 36993154 - 36993124
Alignment:
Q  8 tagcctagtggctagagaaattcaccttaaa 38  Q
    |||||||||||||||||||||||||||||||    
T  36993154 tagcctagtggctagagaaattcaccttaaa 36993124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 26885375 - 26885412
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  26885375 tgtcaagtagcctagtggctagagaaatccaccttaaa 26885412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 38
Target Start/End: Original strand, 40406943 - 40406972
Alignment:
Q  9 agcctagtggctagagaaattcaccttaaa 38  Q
    ||||||||||||||||||||||||||||||    
T  40406943 agcctagtggctagagaaattcaccttaaa 40406972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 44251302 - 44251339
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  44251302 tgtcaaatagcctagcggctagaaaaattcaccttaaa 44251339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 48404112 - 48404149
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  48404112 tgtcaagtagcctagtggctaaagaaattcaccttaaa 48404149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 50815826 - 50815793
Alignment:
Q  2 gtcaaatagcctagtggctagagaaattcacctt 35  Q
    ||||| ||||||||||||||||||||||||||||    
T  50815826 gtcaagtagcctagtggctagagaaattcacctt 50815793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 51974866 - 51974830
Alignment:
Q  2 gtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  51974866 gtcaagtagcctagtggctagataaattcaccttaaa 51974830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 4632044 - 4632099
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaaatgagttaagctcatggggac 59  Q
    ||||||||||||||||||||||||||||||||||||||||    |||||||||||||||    
T  4632044 tgtcaaatagcctagtggctagagaaattcaccttaaaat---ctaagctcatggggac 4632099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 34107614 - 34107577
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    |||||| |||||||||||||||||||||||||||||||    
T  34107614 tgtcaagtagcctagtggctagagaaattcaccttaaa 34107577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 41750066 - 41750029
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    |||||| |||||||||||||||||||||||||||||||    
T  41750066 tgtcaagtagcctagtggctagagaaattcaccttaaa 41750029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 33065233 - 33065269
Alignment:
Q  2 gtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    ||||| |||||||||||||||||||||||||||||||    
T  33065233 gtcaagtagcctagtggctagagaaattcaccttaaa 33065269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 38
Target Start/End: Original strand, 18424134 - 18424164
Alignment:
Q  8 tagcctagtggctagagaaattcaccttaaa 38  Q
    |||||||||||||||||||||||||||||||    
T  18424134 tagcctagtggctagagaaattcaccttaaa 18424164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 3330176 - 3330213
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  3330176 tgtcaaatagcttagtggttagagaaattcaccttaaa 3330213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 18949660 - 18949701
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaaatga 42  Q
    |||||| ||| ||||||||||||||||||||| |||||||||    
T  18949660 tgtcaagtagtctagtggctagagaaattcacattaaaatga 18949701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 37905481 - 37905517
Alignment:
Q  148 aatatcacgagaaaatgtctcgcgaatccgtcccgac 184  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  37905481 aatatcacgagaacatgtctcgcgaatccttcccgac 37905517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 42541274 - 42541238
Alignment:
Q  2 gtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  42541274 gtcaagtagcctagcggctagagaaattcaccttaaa 42541238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 42998754 - 42998718
Alignment:
Q  2 gtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  42998754 gtcaagtagcctagcggctagagaaattcaccttaaa 42998718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 43027274 - 43027238
Alignment:
Q  2 gtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  43027274 gtcaagtagtctagtggctagagaaattcaccttaaa 43027238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 121769 - 121810
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaaatga 42  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  121769 tgtcaaatagcctagtggctagataaattcaccttaaaatga 121810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 30162781 - 30162740
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaaatga 42  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  30162781 tgtcaaatagcctagttgctagagaaattcaccttaaaatga 30162740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 36590515 - 36590474
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaaatga 42  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  36590515 tgtcaaatagtctagtggctagagaaattcaccttaaaatga 36590474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 53733992 - 53734047
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaaatgagttaagctcatggggac 59  Q
    |||||||||||||||||| |||||||||||||||||||||    |||||||||||||||    
T  53733992 tgtcaaatagcctagtggttagagaaattcaccttaaaat---ctaagctcatggggac 53734047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 23156554 - 23156515
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaaat 40  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  23156554 tgtcaaatagcctggtggctagagaaattcaccttaaaat 23156515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 22602179 - 22602215
Alignment:
Q  2 gtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    ||||| |||||||||||||||||||||||||||||||    
T  22602179 gtcaagtagcctagtggctagagaaattcaccttaaa 22602215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 33528181 - 33528217
Alignment:
Q  2 gtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    ||||| |||||||||||||||||||||||||||||||    
T  33528181 gtcaagtagcctagtggctagagaaattcaccttaaa 33528217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 47864755 - 47864719
Alignment:
Q  2 gtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    ||||| |||||||||||||||||||||||||||||||    
T  47864755 gtcaagtagcctagtggctagagaaattcaccttaaa 47864719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 55426229 - 55426193
Alignment:
Q  2 gtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    ||||| |||||||||||||||||||||||||||||||    
T  55426229 gtcaagtagcctagtggctagagaaattcaccttaaa 55426193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 31902940 - 31902979
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaaat 40  Q
    |||||||||| ||||||| |||||||||||||||||||||    
T  31902940 tgtcaaatagtctagtggttagagaaattcaccttaaaat 31902979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 39
Target Start/End: Complemental strand, 25165556 - 25165526
Alignment:
Q  9 agcctagtggctagagaaattcaccttaaaa 39  Q
    |||||||||||||||||||||||||||||||    
T  25165556 agcctagtggctagagaaattcaccttaaaa 25165526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 27394627 - 27394590
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    |||||| |||||||| ||||||||||||||||||||||    
T  27394627 tgtcaagtagcctagcggctagagaaattcaccttaaa 27394590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 27817043 - 27817080
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  27817043 tgtcaagtagcctagtggctagagaaattcaacttaaa 27817080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 29645802 - 29645839
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  29645802 tgtcaagtagtctagtggctagagaaattcaccttaaa 29645839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 31435476 - 31435513
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  31435476 tgtcaagtagtctagtggctagagaaattcaccttaaa 31435513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 39739394 - 39739357
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  39739394 tgtcaagtagtctagtggctagagaaattcaccttaaa 39739357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 54457273 - 54457236
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    |||||| |||||||| ||||||||||||||||||||||    
T  54457273 tgtcaagtagcctagcggctagagaaattcaccttaaa 54457236  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 1102672 - 1102708
Alignment:
Q  2 gtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  1102672 gtcaagtagcctagcggctagagaaattcaccttaaa 1102708  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 23155965 - 23156019
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaaatgagttaagctcatggggac 59  Q
    ||||||||||||| ||||||||||||| ||||||||||||    |||||||||||||||    
T  23155965 tgtcaaatagcctggtggctagagaaa-tcaccttaaaat---ctaagctcatggggac 23156019  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 35343630 - 35343579
Alignment:
Q  5 aaatagcctagtggctagagaaattcaccttaaaatgagttaagctcatggggac 59  Q
    |||||||||||| |||||||||||| ||||||||||    |||||||||||||||    
T  35343630 aaatagcctagtagctagagaaatttaccttaaaat---ctaagctcatggggac 35343579  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 38668247 - 38668211
Alignment:
Q  2 gtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  38668247 gtcaagtagtctagtggctagagaaattcaccttaaa 38668211  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 49429579 - 49429543
Alignment:
Q  2 gtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  49429579 gtcaaatagcttagcggctagagaaattcaccttaaa 49429543  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 25965128 - 25965183
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaaatgagttaagctcatggggac 59  Q
    |||||||||||||||||| |||||||||||||||||||||    |||||||||||||||    
T  25965128 tgtcaaatagcctagtggttagagaaattcaccttaaaat---ctaagctcatggggac 25965183  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 36388637 - 36388582
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaaatgagttaagctcatggggac 59  Q
    |||||||||||||||||| |||||||||||||||||||||    |||||||||||||||    
T  36388637 tgtcaaatagcctagtggttagagaaattcaccttaaaat---ctaagctcatggggac 36388582  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 1576426 - 1576388
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaaa 39  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  1576426 tgtcaaatagcctggtggctagagaaattcaccttaaaa 1576388  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 10091432 - 10091469
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  10091432 tgtcaaatagcgtagtggctagagaaattcaccttaaa 10091469  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 32986464 - 32986431
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcacct 34  Q
    ||||||||||||||||||||||||||||||||||    
T  32986464 tgtcaaatagcctagtggctagagaaattcacct 32986431  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 34238850 - 34238798
Alignment:
Q  4 caaatagcctagtggctagagaaattcaccttaaaatgagttaagctcatggggac 59  Q
    ||||||||||||||| |||||||||||||||||||||    |||||||||||||||    
T  34238850 caaatagcctagtggttagagaaattcaccttaaaat---ctaagctcatggggac 34238798  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 4956068 - 4956104
Alignment:
Q  2 gtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    ||||| |||||||||||||||||||||||||||||||    
T  4956068 gtcaagtagcctagtggctagagaaattcaccttaaa 4956104  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 48433686 - 48433722
Alignment:
Q  2 gtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    ||||| |||||||||||||||||||||||||||||||    
T  48433686 gtcaagtagcctagtggctagagaaattcaccttaaa 48433722  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 33413952 - 33413918
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcacctt 35  Q
    |||||||||||||| ||||||||||||||||||||    
T  33413952 tgtcaaatagcctaatggctagagaaattcacctt 33413918  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 27454131 - 27454098
Alignment:
Q  2 gtcaaatagcctagtggctagagaaattcacctt 35  Q
    ||||| ||||||||||||||||||||||||||||    
T  27454131 gtcaagtagcctagtggctagagaaattcacctt 27454098  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 28914853 - 28914886
Alignment:
Q  2 gtcaaatagcctagtggctagagaaattcacctt 35  Q
    ||||| ||||||||||||||||||||||||||||    
T  28914853 gtcaagtagcctagtggctagagaaattcacctt 28914886  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 43440805 - 43440772
Alignment:
Q  5 aaatagcctagtggctagagaaattcaccttaaa 38  Q
    |||||| |||||||||||||||||||||||||||    
T  43440805 aaatagtctagtggctagagaaattcaccttaaa 43440772  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 5228189 - 5228153
Alignment:
Q  2 gtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  5228189 gtcaagtagcctagcggctagagaaattcaccttaaa 5228153  T

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Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 419832 - 419795
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    |||||| |||||||||||||||||||||||||||||||    
T  419832 tgtcaagtagcctagtggctagagaaattcaccttaaa 419795  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 10123028 - 10123065
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    |||||| |||||||||||||||||||||||||||||||    
T  10123028 tgtcaagtagcctagtggctagagaaattcaccttaaa 10123065  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 14262696 - 14262733
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  14262696 tgtcaaatagcttagtggctagagaaattcaccttaaa 14262733  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 27054816 - 27054779
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    |||||| |||||||||||||||||||||||||||||||    
T  27054816 tgtcaagtagcctagtggctagagaaattcaccttaaa 27054779  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 47651991 - 47651950
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaaatga 42  Q
    |||||| ||||| |||||||||||||||||||||||||||||    
T  47651991 tgtcaagtagcccagtggctagagaaattcaccttaaaatga 47651950  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 34661135 - 34661080
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaaatgagttaagctcatggggac 59  Q
    |||||||||||||||| |||||||||||| ||||||||||    |||||||||||||||    
T  34661135 tgtcaaatagcctagtagctagagaaatttaccttaaaat---ctaagctcatggggac 34661080  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 43109214 - 43109250
Alignment:
Q  2 gtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    ||||| |||||||||||||||||||||||||||||||    
T  43109214 gtcaagtagcctagtggctagagaaattcaccttaaa 43109250  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 42
Target Start/End: Original strand, 2017672 - 2017701
Alignment:
Q  13 tagtggctagagaaattcaccttaaaatga 42  Q
    ||||||||||||||||||||||||||||||    
T  2017672 tagtggctagagaaattcaccttaaaatga 2017701  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 22386223 - 22386260
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  22386223 tgtcaagtagtctagtggctagagaaattcaccttaaa 22386260  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 38
Target Start/End: Original strand, 24134607 - 24134636
Alignment:
Q  9 agcctagtggctagagaaattcaccttaaa 38  Q
    ||||||||||||||||||||||||||||||    
T  24134607 agcctagtggctagagaaattcaccttaaa 24134636  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 38
Target Start/End: Original strand, 25031480 - 25031509
Alignment:
Q  9 agcctagtggctagagaaattcaccttaaa 38  Q
    ||||||||||||||||||||||||||||||    
T  25031480 agcctagtggctagagaaattcaccttaaa 25031509  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 40061563 - 40061526
Alignment:
Q  1 tgtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  40061563 tgtcaagtagcctagtggctagagaaatccaccttaaa 40061526  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 16985911 - 16985947
Alignment:
Q  2 gtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    ||||| || ||||||||||||||||||||||||||||    
T  16985911 gtcaagtaacctagtggctagagaaattcaccttaaa 16985947  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 19424165 - 19424129
Alignment:
Q  2 gtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  19424165 gtcaagtagcctagcggctagagaaattcaccttaaa 19424129  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 29332403 - 29332367
Alignment:
Q  2 gtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  29332403 gtcaagtagcctagcggctagagaaattcaccttaaa 29332367  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 48497189 - 48497225
Alignment:
Q  2 gtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  48497189 gtcaagtagcctagtggctagagaaatttaccttaaa 48497225  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 49620091 - 49620055
Alignment:
Q  2 gtcaaatagcctagtggctagagaaattcaccttaaa 38  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  49620091 gtcaagtagcctagtggctagagaaattcactttaaa 49620055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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