View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13182_high_17 (Length: 236)
Name: NF13182_high_17
Description: NF13182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13182_high_17 |
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| [»] scaffold0256 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 133; Significance: 3e-69; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 15 - 215
Target Start/End: Original strand, 16977693 - 16977888
Alignment:
| Q |
15 |
atgaacatgcttccttcacacctttcctgaaagataagtaaataaagagttaattgttatgttaaatgtaactgatccaaatgatataaacatgtaatag |
114 |
Q |
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| T |
16977693 |
atgaacatgcttccttcacacctttcctaaaagataagtaaataaagagttaacttttattttaaatgtaactgatcaaaatgatataaacatgtaat-- |
16977790 |
T |
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| Q |
115 |
aaaaatagaaaaattacaatatacagaaaagacgtgactcaattgaatatgacgattcaaatgtcattcagcaacaaagtcgtaggttatcactttaact |
214 |
Q |
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| T |
16977791 |
---aatagaaaaattacaatatacacaaaagacgcgactcaattgaatatgacgatttaaatgtcattcagcagcaaagacataggttatcattttaact |
16977887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 16580286 - 16580239
Alignment:
| Q |
34 |
acctttcctgaaagataagtaaataaagagttaattgttatgttaaat |
81 |
Q |
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| T |
16580286 |
acctttccggaaagataagtaaataaagagttaattgttatgttaaat |
16580239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 16615094 - 16615141
Alignment:
| Q |
34 |
acctttcctgaaagataagtaaataaagagttaattgttatgttaaat |
81 |
Q |
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| T |
16615094 |
acctttccggaaagataagtaaataaagagttaattgttatgttaaat |
16615141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 16874146 - 16874099
Alignment:
| Q |
34 |
acctttcctgaaagataagtaaataaagagttaattgttatgttaaat |
81 |
Q |
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| T |
16874146 |
acctttccggaaagataagaaaataaagagttaattgttacgttaaat |
16874099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 11420 - 11481
Alignment:
| Q |
20 |
catgcttccttcacacctttcctgaaagataagtaaataaagagttaattgttatgttaaat |
81 |
Q |
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| T |
11420 |
catgcttctttccaacctttcctgaaagataagtaaataaagagttaattgttatgttaaat |
11481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 21629039 - 21628995
Alignment:
| Q |
38 |
ttcctgaaagataagtaaataaagagttaattgttatgttaaatg |
82 |
Q |
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| T |
21629039 |
ttcctgaaatataaggaaaaaaagagttaattgtgatgttaaatg |
21628995 |
T |
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