View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13182_high_5 (Length: 503)

Name: NF13182_high_5
Description: NF13182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13182_high_5
NF13182_high_5
[»] chr8 (2 HSPs)
chr8 (1-484)||(294308-294791)
chr8 (298-359)||(4561103-4561164)
[»] chr4 (2 HSPs)
chr4 (298-336)||(46676699-46676737)
chr4 (298-341)||(17912817-17912860)
[»] scaffold0167 (1 HSPs)
scaffold0167 (298-339)||(23493-23534)
[»] chr2 (2 HSPs)
chr2 (298-334)||(10084306-10084342)
chr2 (310-359)||(40149015-40149064)
[»] chr1 (4 HSPs)
chr1 (297-336)||(13031125-13031164)
chr1 (298-337)||(31626239-31626278)
chr1 (298-352)||(19809943-19809997)
chr1 (297-343)||(21641404-21641450)
[»] chr6 (1 HSPs)
chr6 (306-352)||(15544484-15544530)
[»] chr5 (2 HSPs)
chr5 (298-336)||(15844510-15844548)
chr5 (297-343)||(22198985-22199031)


Alignment Details
Target: chr8 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 484
Target Start/End: Complemental strand, 294791 - 294308
Alignment:
Q  1 tgttgaggaggaaaagagaggaagatccaaggcaacaaggttggaacccaaatctaaggataaagttattctaaaaaaggtatgcatcattaaccccttt 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  294791 tgttgaggaggacaagagaggaagatccaaggcaacaaggttggaacccaaatctaaggataaagttattctaaaaaaggtatgcatcattaacccctta 294692  T
Q  101 cttgttgtctaaataaaattgaattttagtataaggtaggattctgcaatgtgaatgctcagagcaaccaaaacaggctatagcacagaccgacacctcg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  294691 cttgttgtctaaataaaattgaattttagtataaggtaggattctgcaatgtgaatgctcagagcaaccaaaataggctatagcacagactgacacctcg 294592  T
Q  201 gattgaagatgtgtccgcggcttggcatgacacatgtgattacattcaattatttggccacgacacatgtccggcttgttaacgttggtgtagtgtctct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  294591 gattgaagatgtgtccgcggcttggcatgacacatgtgattacattcaattatttggccacgacacatgtccggcttgttaacgttggtgtagtgtctct 294492  T
Q  301 taaaatttgggttggacctaactcaatcctacaaaatcggcctgtgaggtgacgattgtttatcacttattgactcatgttcatgtgatatctctttcaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  294491 taaaatttgggttggacctaactcaatcctacaaaatcggcctgtgaggtgacgattgtttatcacttattgactcatgttcatgtgatatctctttcaa 294392  T
Q  401 tgtgggacccttcacagtgtctatgtttaagttggtgcttcatagatcgggagcgttattgttttaaatttaagccatccatgc 484  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  294391 tgtgggacccttcacagtgtctatgtttaagttggtgcttcatagatcgggagcgttattgttttaaatttaaaccatccatgc 294308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 359
Target Start/End: Original strand, 4561103 - 4561164
Alignment:
Q  298 tcttaaaatttgggttggacctaactcaatcctacaaaatcggcctgtgaggtgacgattgt 359  Q
    ||||| |||||||| || ||||||||| | |||||||||||||| ||| |||||| ||||||    
T  4561103 tcttataatttgggatgaacctaactctaccctacaaaatcggcttgttaggtgatgattgt 4561164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 336
Target Start/End: Complemental strand, 46676737 - 46676699
Alignment:
Q  298 tcttaaaatttgggttggacctaactcaatcctacaaaa 336  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  46676737 tcttaaaatttgggttggacctaactcaaccctacaaaa 46676699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 341
Target Start/End: Complemental strand, 17912860 - 17912817
Alignment:
Q  298 tcttaaaatttgggttggacctaactcaatcctacaaaatcggc 341  Q
    |||||||||||||||||| |||||||||| ||||||||| ||||    
T  17912860 tcttaaaatttgggttgggcctaactcaaccctacaaaaccggc 17912817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 298 - 339
Target Start/End: Complemental strand, 23534 - 23493
Alignment:
Q  298 tcttaaaatttgggttggacctaactcaatcctacaaaatcg 339  Q
    |||||||| ||| |||||||||||||||||||||||||||||    
T  23534 tcttaaaaattgagttggacctaactcaatcctacaaaatcg 23493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 334
Target Start/End: Complemental strand, 10084342 - 10084306
Alignment:
Q  298 tcttaaaatttgggttggacctaactcaatcctacaa 334  Q
    |||||||||||||||||||| ||||||||||||||||    
T  10084342 tcttaaaatttgggttggacataactcaatcctacaa 10084306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 359
Target Start/End: Original strand, 40149015 - 40149064
Alignment:
Q  310 ggttggacctaactcaatcctacaaaatcggcctgtgaggtgacgattgt 359  Q
    ||||||||||||| ||| || ||||||||||| |||||||||| ||||||    
T  40149015 ggttggacctaacacaaccccacaaaatcggcttgtgaggtgaggattgt 40149064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 336
Target Start/End: Original strand, 13031125 - 13031164
Alignment:
Q  297 ctcttaaaatttgggttggacctaactcaatcctacaaaa 336  Q
    |||||| ||||||||||||||||||||||| |||||||||    
T  13031125 ctcttagaatttgggttggacctaactcaaccctacaaaa 13031164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 337
Target Start/End: Original strand, 31626239 - 31626278
Alignment:
Q  298 tcttaaaatttgggttggacctaactcaatcctacaaaat 337  Q
    ||||| ||||||||||||||||||||||| ||||||||||    
T  31626239 tcttagaatttgggttggacctaactcaaccctacaaaat 31626278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 352
Target Start/End: Original strand, 19809943 - 19809997
Alignment:
Q  298 tcttaaaatttgggttggacctaactcaatcctacaaaatcggcctgtgaggtga 352  Q
    ||||||| |||||||||| |||||||||| | |||||||||||| ||| ||||||    
T  19809943 tcttaaattttgggttgggcctaactcaaccttacaaaatcggcttgtaaggtga 19809997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 343
Target Start/End: Original strand, 21641404 - 21641450
Alignment:
Q  297 ctcttaaaatttgggttggacctaactcaatcctacaaaatcggcct 343  Q
    ||||||||||||||||||| |||||||||| | ||||||| ||||||    
T  21641404 ctcttaaaatttgggttgggcctaactcaaccttacaaaaccggcct 21641450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 15544484 - 15544530
Alignment:
Q  306 tttgggttggacctaactcaatcctacaaaatcggcctgtgaggtga 352  Q
    |||||||||||||||||| |||| ||||||| |||| ||||||||||    
T  15544484 tttgggttggacctaactgaatcttacaaaaccggcttgtgaggtga 15544530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 336
Target Start/End: Original strand, 15844510 - 15844548
Alignment:
Q  298 tcttaaaatttgggttggacctaactcaatcctacaaaa 336  Q
    |||||||||||||||||| |||||||||||| |||||||    
T  15844510 tcttaaaatttgggttgggcctaactcaatcttacaaaa 15844548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 343
Target Start/End: Original strand, 22198985 - 22199031
Alignment:
Q  297 ctcttaaaatttgggttggacctaactcaatcctacaaaatcggcct 343  Q
    ||||||||||||||||||| |||||||||| | ||||||| ||||||    
T  22198985 ctcttaaaatttgggttgggcctaactcaaccttacaaaaccggcct 22199031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University