View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13182_low_11 (Length: 362)
Name: NF13182_low_11
Description: NF13182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13182_low_11 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 13 - 362
Target Start/End: Complemental strand, 33718756 - 33718407
Alignment:
| Q |
13 |
aatattgatagtttaatccttaaatctctaaattcaaccataacacgtacgtaacttctgaattatatcatatttaaatgttctaatcttagtgacataa |
112 |
Q |
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| T |
33718756 |
aatattgatagtttaatccttaaatctctaaattcaaccataacacgtacgtaacttctgaattatatcatatttaaatgttctaatcttagtgacataa |
33718657 |
T |
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| Q |
113 |
atgttaaactaatctatagactatacgaaataagcaaatgcaagaggtgaaatataaaatatagataagatgtcaattatgttctaataagggcattaac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33718656 |
atgttaaactaatctatagactatacgaaataagcaaatgcaagaggtgaaatataaaatatagataagatgtcaattatgttctaataagggcattaac |
33718557 |
T |
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| Q |
213 |
caattaatcaaatgacaataaactatgacattgattcattaacatatattttgtgacaactcatggttacactaatcatattttatagaatcacatggtc |
312 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33718556 |
caattaaccaaatgacaataaactatgacattgattcattaacatatattttgtgacaactcatggttacactaatcatattttatagaatcacatggtc |
33718457 |
T |
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| Q |
313 |
cactagcaaaaaagataagatagcatgagtgaaatgaaggaaacaagagg |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33718456 |
cactagcaaaaaagataagatagcatgagtgaaatgaaggaaacaagagg |
33718407 |
T |
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