View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13182_low_12 (Length: 342)
Name: NF13182_low_12
Description: NF13182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13182_low_12 |
 | |
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| [»] chr2 (4 HSPs) |
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| [»] scaffold0536 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 8 - 342
Target Start/End: Complemental strand, 13448260 - 13447926
Alignment:
| Q |
8 |
gagcagagatagcatagagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagct |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
13448260 |
gagcagagatagcatagagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacgtgctcgagagtttggagaaaaagct |
13448161 |
T |
|
| Q |
108 |
atacaagctattcaagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagaccttaaaagattgagagacctca |
207 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13448160 |
atacaagctattcaagaaggtggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagaccttaaaagattgagagacctca |
13448061 |
T |
|
| Q |
208 |
agctggatgattaattcaaatgagtattgtctaaattttttcaacttttcctaataacatcgtggtttcgtcaagcggaagtgtgaatgttttggatttt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13448060 |
agctggatgattaattcaaatgagtattgtctaaattttttcaacttttcctaataacatcgtggtttcgtcaagcggaagtgtgaatgttttggatttt |
13447961 |
T |
|
| Q |
308 |
ttctatgaattcaagtgacttgttttctctttttt |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
13447960 |
ttctatgaattcaagtgacttgttttctctttttt |
13447926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 8 - 289
Target Start/End: Complemental strand, 13454731 - 13454468
Alignment:
| Q |
8 |
gagcagagatagcatagagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagct |
107 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||| ||| ||||||||||||||||||||| ||| |
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|
| T |
13454731 |
gagcaaagatagcatagagaaggctgtgaggagattgatgggcggtggtgatgaagctaaaaatatcagggtacgtgctcgagagtttggagaaaaggct |
13454632 |
T |
|
| Q |
108 |
atacaagctattcaagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagaccttaaaagattgagagacctca |
207 |
Q |
| |
|
| ||||||||||||| |||| ||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||| |
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|
| T |
13454631 |
acacaagctattcaaaaaggtggctcatcttataataatttgttggctttgattgatgaacttaaa------------------agattgagaaacctca |
13454550 |
T |
|
| Q |
208 |
agctggatgattaattcaaatgagtattgtctaaattttttcaacttttcctaataacatcgtggtttcgtcaagcggaagt |
289 |
Q |
| |
|
||| | |||||||||||||| ||| ||||| ||| |||||||||||||| |||||||||| || |||||||||||| ||||| |
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|
| T |
13454549 |
agccgcatgattaattcaaaggagcattgtgtaagttttttcaactttttctaataacattgttgtttcgtcaagcagaagt |
13454468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 8 - 186
Target Start/End: Complemental strand, 13440097 - 13439919
Alignment:
| Q |
8 |
gagcagagatagcatagagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagct |
107 |
Q |
| |
|
|||||| |||| ||||||||||||||| |||||||||||||| ||||||||||||| ||||||| ||||||| ||||| ||||||||||||||| ||| |
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|
| T |
13440097 |
gagcagggataacatagagaaggctgtgaggagattgatggagaatggtgatgaagctaaaaatatgaggctacttgctcaagagtttggagaaaaggct |
13439998 |
T |
|
| Q |
108 |
atacaagctattcaagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagacc |
186 |
Q |
| |
|
| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||| |
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|
| T |
13439997 |
acacaagctattcaagaaggtggctcgtcttataataatttgttggctttaattgaagaacttaaaagattgagagacc |
13439919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 186 - 294
Target Start/End: Complemental strand, 13439937 - 13439829
Alignment:
| Q |
186 |
cttaaaagattgagagacctcaagctggatgattaattcaaatgagtattgtctaaattttttcaacttttcctaataacatcgtggtttcgtcaagcgg |
285 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||| || ||||||||| |||||||||| | ||||||||| || || | |||||||||| | |
|
|
| T |
13439937 |
cttaaaagattgagagaccccaagcgacatgattaattcaaaggactattgtctatgttttttcaacctatcctaataatattgttggttcgtcaagcag |
13439838 |
T |
|
| Q |
286 |
aagtgtgaa |
294 |
Q |
| |
|
||||||||| |
|
|
| T |
13439837 |
aagtgtgaa |
13439829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 8 - 185
Target Start/End: Complemental strand, 28385231 - 28385054
Alignment:
| Q |
8 |
gagcagagatagcatagagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagct |
107 |
Q |
| |
|
||||||||||| ||||||||||||| | |||| ||||||||||||||| ||||||||||||||||| || | || |||||||||||| ||||| || ||| |
|
|
| T |
28385231 |
gagcagagataacatagagaaggctatgaggaaattgatggacggtggcgatgaagctgaaaatatgagacaacgtgctcgagagttaggagagaaggct |
28385132 |
T |
|
| Q |
108 |
atacaagctattcaagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagac |
185 |
Q |
| |
|
| || |||| || ||||||| || || ||||||||||||||||| ||||| || |||||||||||||||| ||||||| |
|
|
| T |
28385131 |
acacgagctgttaaagaaggtggttcctcttataataatttgttagctttaatcgacgaacttaaaagattgagagac |
28385054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 10 - 177
Target Start/End: Complemental strand, 12540580 - 12540413
Alignment:
| Q |
10 |
gcagagatagcatagagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagctat |
109 |
Q |
| |
|
|||||||| |||||||||||||| | |||||||||||||| |||||| |||||||||||||||| || |||| ||| |||||| ||||||| || |||| |
|
|
| T |
12540580 |
gcagagatggcatagagaaggctatgaggagattgatggatggtggttatgaagctgaaaatatgagactacgtgcacgagagattggagagaaggctag |
12540481 |
T |
|
| Q |
110 |
acaagctattcaagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagat |
177 |
Q |
| |
|
|| |||| |||||||||| || || ||| ||||||||||||| ||||||| |||||| ||||||||| |
|
|
| T |
12540480 |
acgagctgttcaagaaggtggttcctctcataataatttgttatctttgatcgacgaaattaaaagat |
12540413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 7e-34; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 15 - 184
Target Start/End: Complemental strand, 48965219 - 48965050
Alignment:
| Q |
15 |
gatagcatagagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaag |
114 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||||||||||||||| || || || | ||||| ||||||||||||||| |||| || || |
|
|
| T |
48965219 |
gatagcatagagaaggctgtgaggagattgatggacagtggtgatgaagctgagaaaattagaagtcgtgctcaagagtttggagaaaaggctagacgag |
48965120 |
T |
|
| Q |
115 |
ctattcaagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagaga |
184 |
Q |
| |
|
| ||||||||||| ||||||||| |||| |||||||| || |||||||| || || ||||||| |||||| |
|
|
| T |
48965119 |
ccattcaagaaggtggctcgtctcataagaatttgttagccttgattgatgatctcaaaagattgagaga |
48965050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 185
Target Start/End: Complemental strand, 48967352 - 48967178
Alignment:
| Q |
11 |
cagagatagcatagagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagctata |
110 |
Q |
| |
|
|||||||| ||||||||| ||| |||| |||||||||||| || ||||||||||| || ||||| | || ||||||||| ||||||||||| |||| | |
|
|
| T |
48967352 |
cagagataacatagagaaagctataagaagattgatggacaatgacgatgaagctgagaagatcagacaacgtgctcgagactttggagaaaaggctaca |
48967253 |
T |
|
| Q |
111 |
caagctattcaagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagac |
185 |
Q |
| |
|
| ||| |||||||||| |||| ||||||||||||||| | ||||||||||| || ||||||||| ||||||| |
|
|
| T |
48967252 |
cgagcacttcaagaaggtggcttgtcttataataatttacttgctttgattgatgatcttaaaagaatgagagac |
48967178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 21 - 185
Target Start/End: Complemental strand, 48961175 - 48961011
Alignment:
| Q |
21 |
atagagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagctattc |
120 |
Q |
| |
|
||||||||||| || || | ||| |||||||||||||||||||| ||| |||| || | | ||||||||||||||| || || |||||| |||| ||| |
|
|
| T |
48961175 |
atagagaaggcagtgagaaaattaatggacggtggtgatgaagccgaagatataagacggcgtgctcgagagtttggggataaggctatatgagctgttc |
48961076 |
T |
|
| Q |
121 |
aagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagac |
185 |
Q |
| |
|
||| ||| ||||| ||| ||||||||||||||||||| ||||| || |||||||||| ||||||| |
|
|
| T |
48961075 |
aagtaggcggctcatctcataataatttgttggctttaattgatgatcttaaaagattgagagac |
48961011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 14 - 173
Target Start/End: Complemental strand, 48958035 - 48957876
Alignment:
| Q |
14 |
agatagcatagagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaa |
113 |
Q |
| |
|
|||||| ||||| |||||||| | |||||||||||||||||||||||||||||| | |||| | | ||||| |||||| |||||||| |||| || | |
|
|
| T |
48958035 |
agatagtatagaaaaggctgtgaagagattgatggacggtggtgatgaagctgaggaaatcaaacagcgtgctcaagagttcggagaaaaggctacacga |
48957936 |
T |
|
| Q |
114 |
gctattcaagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaa |
173 |
Q |
| |
|
||| |||||||||| || || ||| |||| ||||||||| |||||||||| || |||||| |
|
|
| T |
48957935 |
gctgttcaagaaggtggatcatctcataacaatttgttgtctttgattgatgatcttaaa |
48957876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 40 - 127
Target Start/End: Original strand, 48912659 - 48912746
Alignment:
| Q |
40 |
gattgatggacggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagctattcaagaagg |
127 |
Q |
| |
|
||||||||||| |||||||||||||||| || ||||| | |||||||||||||||||| || ||||||| ||| || ||| ||||||| |
|
|
| T |
48912659 |
gattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatgcaattaaagaagg |
48912746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 16 - 186
Target Start/End: Original strand, 12641771 - 12641941
Alignment:
| Q |
16 |
atagcatagagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatacaagc |
115 |
Q |
| |
|
|||| |||||||| ||||| |||||||||||||||| ||||||||||||| | | ||||| | || ||||| ||||||||| |||| |||| ||| || |
|
|
| T |
12641771 |
atagtatagagaaagctgtgaggagattgatggacgatggtgatgaagctaaggaaatcagacaacgtgctcaagagtttgggaaaaaggctacacatgc |
12641870 |
T |
|
| Q |
116 |
tattcaagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagacc |
186 |
Q |
| |
|
| || ||||||| || |||||| |||| |||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
12641871 |
tgttgaagaaggcgggtcgtctcataacaatttgttggctttgattaacgatcttaaaagatcgagagacc |
12641941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 3417809 - 3417975
Alignment:
| Q |
8 |
gagcagagatagcatagagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagct |
107 |
Q |
| |
|
|||||||||| |||||||||||| | ||||||||||||||| || ||||||| |||||| ||| || |||| |||||||||| ||||||| || ||| |
|
|
| T |
3417809 |
gagcagagatgacatagagaaggcaatgaggagattgatggacagtagtgatgaggctgaaggtatgagactacgtgctcgagagcttggagagaaggct |
3417908 |
T |
|
| Q |
108 |
atacaagctattcaagaagggggctcgtcttataataatttgttggctttgattgacgaacttaaaa |
174 |
Q |
| |
|
| || ||||||||||||||| || || || || |||||||||| ||||||| ||||||||||||| |
|
|
| T |
3417909 |
aaacgagctattcaagaaggtggttcctcacatcataatttgttaactttgatcgacgaacttaaaa |
3417975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 151
Target Start/End: Original strand, 12590455 - 12590594
Alignment:
| Q |
12 |
agagatagcatagagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacatgctcgagagtttggagaaaaagctatac |
111 |
Q |
| |
|
|||||||||||| |||| ||||| || ||||||||||| ||||| ||||||||| | ||||| | || | || |||||| || |||||||||| || |
|
|
| T |
12590455 |
agagatagcataaagaatgctgtgagaagattgatggatggtggcattgaagctgaggaaatcagacgacgtagtcaagagttaggggaaaaagctagac |
12590554 |
T |
|
| Q |
112 |
aagctattcaagaagggggctcgtcttataataatttgtt |
151 |
Q |
| |
|
|||| ||||| |||| ||||| ||| ||||||||||||| |
|
|
| T |
12590555 |
tagctgttcaacaaggtggctcctctaataataatttgtt |
12590594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 6800 - 6852
Alignment:
| Q |
15 |
gatagcatagagaaggctgtaaggagattgatggacggtggtgatgaagctga |
67 |
Q |
| |
|
||||| || ||||||||||| |||||||||||||| |||||||| |||||||| |
|
|
| T |
6800 |
gatagtattgagaaggctgtgaggagattgatggatggtggtgacgaagctga |
6852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 1739 - 1791
Alignment:
| Q |
12 |
agagatagcatagagaaggctgtaaggagattgatggacggtggtgatgaagc |
64 |
Q |
| |
|
|||||| | ||| |||||||| ||||||| ||||||||| ||||||||||||| |
|
|
| T |
1739 |
agagatcgtataaagaaggctttaaggaggttgatggacagtggtgatgaagc |
1791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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